Wall clock time and date at job start Mon Mar 30 2020 05:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09003 * 109.99860 * 2 1 4 4 C 1.54321 * 109.88310 * 238.90274 * 2 1 3 5 5 H 1.09000 * 110.72361 * 144.41135 * 4 2 1 6 6 N 1.46902 * 110.72164 * 21.31345 * 4 2 1 7 7 C 1.46905 * 110.99571 * 73.22545 * 6 4 2 8 8 C 1.46894 * 111.00332 * 197.17698 * 6 4 2 9 9 C 1.55160 * 102.94254 * 262.77577 * 4 2 1 10 10 C 1.55131 * 101.48492 * 324.32993 * 9 4 2 11 11 N 1.47021 * 109.88566 * 121.09292 * 2 1 3 12 12 C 1.34780 * 125.64769 * 300.44403 * 11 2 1 13 13 O 1.21442 * 119.99909 * 359.97438 * 12 11 2 14 14 C 1.48833 * 119.99914 * 179.97438 * 12 11 2 15 15 O 1.21496 * 120.00094 * 359.97438 * 14 12 11 16 16 N 1.34773 * 119.99628 * 179.97438 * 14 12 11 17 17 C 1.36124 * 119.99900 * 179.97438 * 16 14 12 18 18 H 1.08004 * 119.99557 * 359.97438 * 17 16 14 19 19 C 1.39581 * 120.00349 * 179.97438 * 17 16 14 20 20 N 1.31025 * 119.99571 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00154 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47018 * 60.00603 * 21 19 17 23 23 H 1.48499 * 109.47375 * 300.00352 * 21 19 17 24 24 H 1.48506 * 109.46975 * 180.02562 * 21 19 17 25 25 H 1.09002 * 109.47188 * 293.27563 * 1 2 3 26 26 H 1.09004 * 109.47538 * 53.27079 * 1 2 3 27 27 H 1.08994 * 109.47467 * 173.26729 * 1 2 3 28 28 H 1.08999 * 109.47225 * 60.00237 * 7 6 4 29 29 H 1.08997 * 109.47147 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.47474 * 300.00079 * 7 6 4 31 31 H 1.09004 * 109.47190 * 64.50175 * 8 6 4 32 32 H 1.09000 * 109.47522 * 184.49808 * 8 6 4 33 33 H 1.09002 * 109.47724 * 304.50504 * 8 6 4 34 34 H 1.08997 * 111.00196 * 82.56883 * 9 4 2 35 35 H 1.09000 * 111.00318 * 206.42595 * 9 4 2 36 36 H 1.08995 * 110.49929 * 278.45566 * 10 9 4 37 37 H 1.08994 * 110.34096 * 156.05791 * 10 9 4 38 38 H 0.96999 * 120.00464 * 0.02562 * 16 14 12 39 39 H 0.96996 * 120.00216 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7495 -1.2427 5 1 2.9656 -0.2832 -1.6182 6 7 1.0278 -0.7992 -2.2919 7 6 0.8601 0.5149 -2.9269 8 6 1.3442 -1.8296 -3.2900 9 6 2.3518 -2.1695 -0.6923 10 6 2.8613 -1.8465 0.7369 11 7 2.0300 -0.7140 1.1839 12 6 1.7753 -0.3844 2.4657 13 8 1.0782 0.5774 2.7183 14 6 2.3484 -1.1991 3.5716 15 8 3.0455 -2.1616 3.3188 16 7 2.0941 -0.8691 4.8533 17 6 2.6179 -1.6145 5.8648 18 1 3.2368 -2.4706 5.6400 19 6 2.3550 -1.2726 7.1923 20 7 1.6037 -0.2343 7.4648 21 14 3.0731 -2.2959 8.5802 22 1 4.5555 -2.2786 8.4921 23 1 2.5868 -3.6944 8.4669 24 1 2.6477 -1.7284 9.8849 25 1 -0.3634 0.4061 0.9440 26 1 -0.3634 0.6146 -0.8237 27 1 -0.3634 -1.0205 -0.1205 28 1 1.8038 0.8246 -3.3759 29 1 0.0938 0.4500 -3.6994 30 1 0.5579 1.2452 -2.1763 31 1 1.3154 -2.8123 -2.8193 32 1 0.6119 -1.7914 -4.0964 33 1 2.3402 -1.6498 -3.6948 34 1 1.4451 -2.7736 -0.6602 35 1 3.1270 -2.6619 -1.2795 36 1 3.9122 -1.5588 0.7115 37 1 2.7177 -2.7047 1.3933 38 1 1.5373 -0.1009 5.0551 39 1 1.2305 0.2969 6.7441 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310575014.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:27 Heat of formation + Delta-G solvation = -48.506889 kcal Electronic energy + Delta-G solvation = -21403.726686 eV Core-core repulsion = 18154.067768 eV Total energy + Delta-G solvation = -3249.658918 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.30687 -38.68330 -37.14510 -35.76425 -34.49074 -31.28184 -31.27061 -30.53861 -27.61223 -26.07856 -25.61338 -23.85547 -22.91463 -21.67924 -19.82464 -18.81246 -18.10076 -17.24596 -16.29013 -16.03093 -15.29571 -15.17657 -14.82676 -14.52414 -14.09089 -13.99546 -13.77793 -13.25754 -12.94837 -12.76458 -12.52989 -12.33044 -12.23486 -11.99284 -11.78240 -11.38844 -11.32197 -11.15788 -11.07708 -10.90189 -10.53240 -10.28003 -10.19065 -10.03611 -9.73054 -8.55868 -8.38939 -8.26843 -8.14022 -7.00841 -4.04592 2.39444 3.07875 3.27904 3.30287 3.48062 3.77248 4.14777 4.24005 4.34544 4.64148 4.84312 4.92359 5.01423 5.12579 5.16731 5.22909 5.31500 5.36137 5.47388 5.54410 5.63207 5.68423 5.69948 5.74677 5.78854 6.00681 6.22127 6.25913 6.30510 6.56168 6.71227 6.82712 6.86020 7.52527 7.78145 7.87817 8.22458 8.45394 8.71217 9.24686 9.68711 10.41140 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.045189 B = 0.004165 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.469737 B = 6721.636116 C = 7183.737142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.144 3.856 3 H 0.067 0.933 4 C 0.072 3.928 5 H 0.057 0.943 6 N -0.532 5.532 7 C 0.018 3.982 8 C 0.024 3.976 9 C -0.130 4.130 10 C 0.106 3.894 11 N -0.596 5.596 12 C 0.529 3.471 13 O -0.548 6.548 14 C 0.400 3.600 15 O -0.586 6.586 16 N -0.513 5.513 17 C -0.384 4.384 18 H 0.109 0.891 19 C -0.001 4.001 20 N -0.868 5.868 21 Si 1.096 2.904 22 H -0.280 1.280 23 H -0.279 1.279 24 H -0.276 1.276 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.025 0.975 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.024 0.976 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.109 0.891 38 H 0.388 0.612 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.010 -1.169 -18.278 18.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.040 3.960 3 H 0.085 0.915 4 C -0.037 4.037 5 H 0.075 0.925 6 N -0.256 5.256 7 C -0.130 4.130 8 C -0.124 4.124 9 C -0.168 4.168 10 C -0.017 4.017 11 N -0.331 5.331 12 C 0.316 3.684 13 O -0.425 6.425 14 C 0.185 3.815 15 O -0.474 6.474 16 N -0.148 5.148 17 C -0.514 4.514 18 H 0.127 0.873 19 C -0.208 4.208 20 N -0.505 5.505 21 Si 0.920 3.080 22 H -0.206 1.206 23 H -0.205 1.205 24 H -0.201 1.201 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.043 0.957 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.043 0.957 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.127 0.873 38 H 0.223 0.777 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.303 -1.505 -16.341 16.413 hybrid contribution 0.419 0.934 -2.192 2.419 sum 0.115 -0.571 -18.533 18.542 Atomic orbital electron populations 1.21953 0.93706 1.02692 1.01955 1.21429 0.95906 0.95026 0.83657 0.91454 1.22729 0.92397 0.97156 0.91426 0.92482 1.61984 1.45135 1.06161 1.12312 1.22532 1.00227 0.90884 0.99366 1.22396 0.99174 0.96002 0.94806 1.23049 1.02045 0.95598 0.96125 1.22567 0.94072 0.90978 0.94099 1.48142 1.50273 1.30570 1.04111 1.20370 0.80690 0.84631 0.82680 1.90665 1.39114 1.29202 1.83544 1.18781 0.90088 0.89267 0.83326 1.90518 1.43582 1.30795 1.82460 1.41578 1.42035 1.26598 1.04615 1.20733 1.31515 1.12488 0.86665 0.87346 1.26919 0.96297 0.98341 0.99240 1.70694 1.28291 1.15077 1.36398 0.83088 0.76047 0.74689 0.74154 1.20554 1.20537 1.20087 0.91906 0.91708 0.92085 0.95692 0.91266 0.90703 0.90898 0.91467 0.95692 0.89650 0.90246 0.91659 0.87289 0.77735 0.91728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 8.28 37.15 0.31 -1.85 16 2 C 0.14 2.16 3.00 -66.96 -0.20 1.96 16 3 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 4 C 0.07 0.85 2.53 -65.88 -0.17 0.68 16 5 H 0.06 0.64 8.11 -51.93 -0.42 0.22 16 6 N -0.53 -5.46 3.72 -240.95 -0.90 -6.35 16 7 C 0.02 0.16 8.87 60.07 0.53 0.69 16 8 C 0.02 0.20 9.10 60.06 0.55 0.75 16 9 C -0.13 -1.54 5.14 -24.46 -0.13 -1.67 16 10 C 0.11 1.69 6.08 -2.41 -0.01 1.68 16 11 N -0.60 -10.96 3.08 -163.62 -0.50 -11.46 16 12 C 0.53 11.93 7.67 -11.87 -0.09 11.84 16 13 O -0.55 -13.06 15.28 5.42 0.08 -12.97 16 14 C 0.40 10.19 7.78 -11.88 -0.09 10.10 16 15 O -0.59 -15.47 13.32 5.37 0.07 -15.40 16 16 N -0.51 -13.74 5.24 -11.59 -0.06 -13.80 16 17 C -0.38 -10.68 9.67 -15.15 -0.15 -10.82 16 18 H 0.11 3.09 7.15 -52.48 -0.38 2.72 16 19 C 0.00 -0.02 5.51 -17.39 -0.10 -0.12 16 20 N -0.87 -24.17 13.66 55.53 0.76 -23.41 16 21 Si 1.10 23.22 29.93 -169.99 -5.09 18.13 16 22 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 23 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 24 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 25 H 0.06 1.11 6.55 -51.93 -0.34 0.77 16 26 H 0.06 0.82 5.53 -51.93 -0.29 0.53 16 27 H 0.06 0.93 8.07 -51.93 -0.42 0.51 16 28 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.07 0.52 8.07 -51.93 -0.42 0.10 16 30 H 0.07 0.69 5.92 -51.93 -0.31 0.39 16 31 H 0.07 0.59 6.87 -51.93 -0.36 0.24 16 32 H 0.07 0.48 8.04 -51.93 -0.42 0.06 16 33 H 0.02 0.19 8.13 -51.93 -0.42 -0.23 16 34 H 0.08 1.04 7.79 -51.93 -0.40 0.64 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.11 2.01 6.13 -51.93 -0.32 1.69 16 38 H 0.39 10.20 6.18 -40.82 -0.25 9.95 16 39 H 0.27 7.48 6.78 -40.82 -0.28 7.20 16 LS Contribution 311.06 15.07 4.69 4.69 Total: -1.00 -31.17 311.06 -6.00 -37.16 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -5.50 Total: 10.18 kcal Atomic # 6 Polarization: 12.78 SS G_CDS: 0.45 Total: 13.23 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: -0.70 Total: -55.03 kcal Atomic # 8 Polarization: -28.53 SS G_CDS: 0.15 Total: -28.37 kcal Atomic # 14 Polarization: 23.22 SS G_CDS: -5.09 Total: 18.13 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.17 -6.00 -37.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310575014.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.343 kcal (2) G-P(sol) polarization free energy of solvation -31.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds