Wall clock time and date at job start Mon Mar 30 2020 05:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09003 * 109.99860 * 2 1 4 4 C 1.54321 * 109.88310 * 238.90274 * 2 1 3 5 5 H 1.09000 * 110.72361 * 144.41135 * 4 2 1 6 6 N 1.46902 * 110.72164 * 21.31345 * 4 2 1 7 7 C 1.46905 * 110.99571 * 73.22545 * 6 4 2 8 8 C 1.46894 * 111.00332 * 197.17698 * 6 4 2 9 9 C 1.55160 * 102.94254 * 262.77577 * 4 2 1 10 10 C 1.55131 * 101.48492 * 324.32993 * 9 4 2 11 11 N 1.47021 * 109.88566 * 121.09292 * 2 1 3 12 12 C 1.34780 * 125.64769 * 300.44403 * 11 2 1 13 13 O 1.21442 * 119.99909 * 359.97438 * 12 11 2 14 14 C 1.48833 * 119.99914 * 179.97438 * 12 11 2 15 15 O 1.21496 * 120.00094 * 359.97438 * 14 12 11 16 16 N 1.34773 * 119.99628 * 179.97438 * 14 12 11 17 17 C 1.36124 * 119.99900 * 179.97438 * 16 14 12 18 18 H 1.08004 * 119.99557 * 359.97438 * 17 16 14 19 19 C 1.39581 * 120.00349 * 179.97438 * 17 16 14 20 20 N 1.31025 * 119.99571 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00154 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47018 * 60.00603 * 21 19 17 23 23 H 1.48499 * 109.47375 * 300.00352 * 21 19 17 24 24 H 1.48506 * 109.46975 * 180.02562 * 21 19 17 25 25 H 1.09002 * 109.47188 * 293.27563 * 1 2 3 26 26 H 1.09004 * 109.47538 * 53.27079 * 1 2 3 27 27 H 1.08994 * 109.47467 * 173.26729 * 1 2 3 28 28 H 1.08999 * 109.47225 * 60.00237 * 7 6 4 29 29 H 1.08997 * 109.47147 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.47474 * 300.00079 * 7 6 4 31 31 H 1.09004 * 109.47190 * 64.50175 * 8 6 4 32 32 H 1.09000 * 109.47522 * 184.49808 * 8 6 4 33 33 H 1.09002 * 109.47724 * 304.50504 * 8 6 4 34 34 H 1.08997 * 111.00196 * 82.56883 * 9 4 2 35 35 H 1.09000 * 111.00318 * 206.42595 * 9 4 2 36 36 H 1.08995 * 110.49929 * 278.45566 * 10 9 4 37 37 H 1.08994 * 110.34096 * 156.05791 * 10 9 4 38 38 H 0.96999 * 120.00464 * 0.02562 * 16 14 12 39 39 H 0.96996 * 120.00216 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7495 -1.2427 5 1 2.9656 -0.2832 -1.6182 6 7 1.0278 -0.7992 -2.2919 7 6 0.8601 0.5149 -2.9269 8 6 1.3442 -1.8296 -3.2900 9 6 2.3518 -2.1695 -0.6923 10 6 2.8613 -1.8465 0.7369 11 7 2.0300 -0.7140 1.1839 12 6 1.7753 -0.3844 2.4657 13 8 1.0782 0.5774 2.7183 14 6 2.3484 -1.1991 3.5716 15 8 3.0455 -2.1616 3.3188 16 7 2.0941 -0.8691 4.8533 17 6 2.6179 -1.6145 5.8648 18 1 3.2368 -2.4706 5.6400 19 6 2.3550 -1.2726 7.1923 20 7 1.6037 -0.2343 7.4648 21 14 3.0731 -2.2959 8.5802 22 1 4.5555 -2.2786 8.4921 23 1 2.5868 -3.6944 8.4669 24 1 2.6477 -1.7284 9.8849 25 1 -0.3634 0.4061 0.9440 26 1 -0.3634 0.6146 -0.8237 27 1 -0.3634 -1.0205 -0.1205 28 1 1.8038 0.8246 -3.3759 29 1 0.0938 0.4500 -3.6994 30 1 0.5579 1.2452 -2.1763 31 1 1.3154 -2.8123 -2.8193 32 1 0.6119 -1.7914 -4.0964 33 1 2.3402 -1.6498 -3.6948 34 1 1.4451 -2.7736 -0.6602 35 1 3.1270 -2.6619 -1.2795 36 1 3.9122 -1.5588 0.7115 37 1 2.7177 -2.7047 1.3933 38 1 1.5373 -0.1009 5.0551 39 1 1.2305 0.2969 6.7441 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310575014.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:27 Heat of formation + Delta-G solvation = -71.220619 kcal Electronic energy + Delta-G solvation = -21404.711627 eV Core-core repulsion = 18154.067768 eV Total energy + Delta-G solvation = -3250.643859 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.83235 -40.24064 -38.91658 -37.12669 -36.38262 -33.32021 -32.45652 -31.88213 -28.31709 -27.70252 -27.04733 -25.51878 -23.92318 -23.20489 -21.23360 -20.37648 -20.02297 -18.90919 -17.81296 -17.40685 -16.78206 -16.76302 -16.01976 -15.78284 -15.54180 -15.48129 -15.37060 -14.72301 -14.51857 -14.02826 -13.52610 -13.48400 -13.39768 -13.24912 -13.13048 -12.87366 -12.66992 -12.47928 -12.18409 -12.11445 -12.01135 -11.88792 -11.74678 -11.63841 -11.61464 -10.36101 -10.16886 -9.83344 -9.29539 -9.15024 -6.22803 0.50178 1.47712 1.58723 1.62655 1.85349 2.30512 2.39492 2.86678 2.97603 3.09145 3.39405 3.54016 3.74910 4.01249 4.19870 4.22133 4.27839 4.37924 4.52086 4.59242 4.63608 4.69671 4.77949 4.86923 4.94340 4.97850 5.08484 5.09883 5.15613 5.31208 5.38603 5.39996 5.71493 6.04235 6.05966 6.13519 6.24656 6.43075 6.81433 7.16994 7.60056 8.28844 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.045189 B = 0.004165 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.469737 B = 6721.636116 C = 7183.737142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.134 3.866 3 H 0.067 0.933 4 C 0.086 3.914 5 H 0.072 0.928 6 N -0.544 5.544 7 C 0.017 3.983 8 C 0.024 3.976 9 C -0.113 4.113 10 C 0.098 3.902 11 N -0.588 5.588 12 C 0.528 3.472 13 O -0.567 6.567 14 C 0.400 3.600 15 O -0.596 6.596 16 N -0.528 5.528 17 C -0.415 4.415 18 H 0.096 0.904 19 C -0.033 4.033 20 N -0.887 5.887 21 Si 1.143 2.857 22 H -0.264 1.264 23 H -0.264 1.264 24 H -0.271 1.271 25 H 0.028 0.972 26 H 0.090 0.910 27 H 0.057 0.943 28 H 0.033 0.967 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.034 0.966 34 H 0.083 0.917 35 H 0.113 0.887 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.387 0.613 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.549 -1.858 -20.518 20.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.032 3.968 3 H 0.085 0.915 4 C -0.024 4.024 5 H 0.090 0.910 6 N -0.269 5.269 7 C -0.131 4.131 8 C -0.124 4.124 9 C -0.151 4.151 10 C -0.025 4.025 11 N -0.321 5.321 12 C 0.313 3.687 13 O -0.447 6.447 14 C 0.185 3.815 15 O -0.485 6.485 16 N -0.164 5.164 17 C -0.544 4.544 18 H 0.114 0.886 19 C -0.235 4.235 20 N -0.524 5.524 21 Si 0.960 3.040 22 H -0.189 1.189 23 H -0.189 1.189 24 H -0.196 1.196 25 H 0.048 0.952 26 H 0.108 0.892 27 H 0.076 0.924 28 H 0.052 0.948 29 H 0.102 0.898 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.053 0.947 34 H 0.102 0.898 35 H 0.131 0.869 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.221 0.779 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.241 -2.204 -18.653 18.784 hybrid contribution 0.242 1.150 -1.703 2.069 sum 0.482 -1.055 -20.356 20.389 Atomic orbital electron populations 1.21848 0.93552 1.02674 1.01127 1.21756 0.96066 0.95299 0.83709 0.91504 1.22584 0.93185 0.96157 0.90444 0.91010 1.61949 1.44552 1.07446 1.12904 1.22568 1.01198 0.89888 0.99409 1.22455 1.00177 0.95199 0.94548 1.22984 1.02860 0.95983 0.93287 1.22716 0.94345 0.89125 0.96286 1.48259 1.49218 1.30994 1.03612 1.19801 0.80994 0.84308 0.83619 1.90654 1.40091 1.29843 1.84123 1.19459 0.89122 0.89051 0.83834 1.90502 1.43715 1.31249 1.82988 1.41672 1.42733 1.26878 1.05142 1.20830 1.32827 1.13016 0.87723 0.88624 1.28452 0.95425 0.98369 1.01227 1.70795 1.29562 1.16015 1.36003 0.82574 0.76275 0.73900 0.71300 1.18897 1.18913 1.19606 0.95243 0.89151 0.92411 0.94809 0.89768 0.91587 0.90819 0.90195 0.94711 0.89789 0.86872 0.90984 0.89994 0.77868 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.87 8.28 71.98 0.60 -3.28 16 2 C 0.13 3.86 3.00 45.34 0.14 3.99 16 3 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 4 C 0.09 1.75 2.53 46.10 0.12 1.87 16 5 H 0.07 1.32 8.11 -2.39 -0.02 1.30 16 6 N -0.54 -9.28 3.72 -916.24 -3.41 -12.68 16 7 C 0.02 0.24 8.87 127.69 1.13 1.37 16 8 C 0.02 0.29 9.10 127.69 1.16 1.46 16 9 C -0.11 -2.36 5.14 32.07 0.16 -2.19 16 10 C 0.10 3.02 6.08 86.93 0.53 3.55 16 11 N -0.59 -21.45 3.08 -789.89 -2.43 -23.88 16 12 C 0.53 24.31 7.67 87.08 0.67 24.98 16 13 O -0.57 -27.84 15.28 -3.53 -0.05 -27.89 16 14 C 0.40 21.00 7.78 87.08 0.68 21.67 16 15 O -0.60 -32.24 13.32 -3.70 -0.05 -32.29 16 16 N -0.53 -29.39 5.24 -308.88 -1.62 -31.01 16 17 C -0.41 -23.73 9.67 84.35 0.82 -22.92 16 18 H 0.10 5.61 7.15 -2.91 -0.02 5.59 16 19 C -0.03 -1.78 5.51 85.14 0.47 -1.31 16 20 N -0.89 -50.42 13.66 21.77 0.30 -50.12 16 21 Si 1.14 46.48 29.93 68.60 2.05 48.54 16 22 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 23 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 24 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 25 H 0.03 1.04 6.55 -2.39 -0.02 1.02 16 26 H 0.09 2.12 5.53 -2.38 -0.01 2.11 16 27 H 0.06 1.69 8.07 -2.39 -0.02 1.67 16 28 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.08 0.95 8.07 -2.39 -0.02 0.93 16 30 H 0.07 1.04 5.92 -2.39 -0.01 1.03 16 31 H 0.07 0.91 6.87 -2.38 -0.02 0.90 16 32 H 0.08 0.82 8.04 -2.39 -0.02 0.80 16 33 H 0.03 0.38 8.13 -2.39 -0.02 0.36 16 34 H 0.08 1.83 7.79 -2.39 -0.02 1.81 16 35 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.08 3.03 6.13 -2.39 -0.01 3.01 16 38 H 0.39 21.34 6.18 -92.71 -0.57 20.77 16 39 H 0.26 14.95 6.78 -92.71 -0.63 14.32 16 Total: -1.00 -69.03 311.06 1.89 -67.14 By element: Atomic # 1 Polarization: 32.38 SS G_CDS: 0.63 Total: 33.01 kcal Atomic # 6 Polarization: 22.73 SS G_CDS: 6.47 Total: 29.19 kcal Atomic # 7 Polarization: -110.54 SS G_CDS: -7.16 Total: -117.70 kcal Atomic # 8 Polarization: -60.08 SS G_CDS: -0.10 Total: -60.18 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.05 Total: 48.54 kcal Total: -69.03 1.89 -67.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310575014.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.081 kcal (2) G-P(sol) polarization free energy of solvation -69.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds