Wall clock time and date at job start Mon Mar 30 2020 05:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47153 * 2 1 4 4 C 1.50697 * 109.46480 * 239.99677 * 2 1 3 5 5 H 1.08003 * 119.99968 * 239.99279 * 4 2 1 6 6 C 1.37875 * 120.00192 * 60.00494 * 4 2 1 7 7 N 1.31516 * 120.00129 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00076 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46864 * 60.00244 * 8 6 4 10 10 H 1.48503 * 109.47135 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47377 * 299.99898 * 8 6 4 12 12 C 1.52998 * 109.47044 * 120.00113 * 2 1 3 13 13 N 1.46503 * 109.47040 * 299.99728 * 12 2 1 14 14 C 1.34774 * 120.00261 * 180.02562 * 13 12 2 15 15 O 1.21286 * 120.00011 * 0.02562 * 14 13 12 16 16 C 1.50695 * 120.00567 * 179.97438 * 14 13 12 17 17 H 1.09003 * 109.59427 * 319.70316 * 16 14 13 18 18 C 1.52980 * 109.59378 * 79.99772 * 16 14 13 19 19 N 1.46008 * 110.04479 * 170.21939 * 18 16 14 20 20 C 1.33722 * 122.92433 * 341.84475 * 19 18 16 21 21 O 1.21283 * 118.61757 * 181.66194 * 20 19 18 22 22 C 1.50249 * 122.75233 * 1.68361 * 20 19 18 23 23 N 1.46905 * 109.89276 * 342.85061 * 22 20 19 24 24 H 1.09008 * 109.46800 * 300.00401 * 1 2 3 25 25 H 1.09004 * 109.47008 * 59.99921 * 1 2 3 26 26 H 1.08992 * 109.47702 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46976 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.47229 * 299.99944 * 3 2 1 29 29 H 1.08993 * 109.47189 * 59.99876 * 3 2 1 30 30 H 0.96997 * 120.00497 * 179.97438 * 7 6 4 31 31 H 1.08995 * 109.47189 * 180.02562 * 12 2 1 32 32 H 1.09002 * 109.47155 * 59.99330 * 12 2 1 33 33 H 0.96997 * 119.99993 * 359.97438 * 13 12 2 34 34 H 1.09004 * 109.37264 * 50.04662 * 18 16 14 35 35 H 1.09002 * 109.28706 * 290.33970 * 18 16 14 36 36 H 0.96994 * 118.53904 * 161.81725 * 19 18 16 37 37 H 1.09002 * 109.38664 * 102.95675 * 22 20 19 38 38 H 1.08996 * 109.38673 * 222.75174 * 22 20 19 39 39 H 1.00901 * 110.99523 * 173.61154 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6991 -0.2395 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3222 -1.1198 -4.0079 9 1 1.8275 -2.5200 -4.0080 10 1 1.8277 -0.4194 -5.2204 11 1 3.8072 -1.1194 -4.0078 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0306 2.4454 14 6 1.8777 -0.4907 3.6695 15 8 2.5757 -1.4763 3.7809 16 6 1.3759 0.2200 4.9000 17 1 1.4271 1.2978 4.7460 18 6 -0.0719 -0.1906 5.1750 19 7 -0.4927 0.3046 6.4825 20 6 0.3723 0.6915 7.4260 21 8 -0.0624 1.0614 8.4962 22 6 1.8600 0.6876 7.2158 23 7 2.1991 -0.1521 6.0591 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.1301 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 0.7087 1.1612 -3.4844 31 1 3.1300 -0.7209 1.2495 32 1 1.6766 -1.7489 1.2493 33 1 0.9944 0.7583 2.3564 34 1 -0.1489 -1.2777 5.1582 35 1 -0.7179 0.2296 4.4041 36 1 -1.4420 0.3555 6.6752 37 1 2.2026 1.7067 7.0360 38 1 2.3501 0.2928 8.1056 39 1 3.1815 -0.0844 5.8388 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316122984.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:21 Heat of formation + Delta-G solvation = -70.190116 kcal Electronic energy + Delta-G solvation = -21044.111181 eV Core-core repulsion = 17793.512007 eV Total energy + Delta-G solvation = -3250.599173 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.69699 -39.32598 -36.95709 -36.19744 -34.15466 -33.42032 -31.22023 -30.09969 -26.13673 -25.84944 -25.81910 -25.19530 -23.67195 -20.79384 -19.38324 -18.83221 -18.05826 -17.00266 -16.76863 -16.09460 -15.87529 -15.52391 -14.95029 -14.75154 -14.51536 -14.38359 -13.78543 -13.53263 -13.01425 -12.90497 -12.78761 -12.36367 -12.27882 -11.94688 -11.45732 -11.26950 -10.91530 -10.79339 -10.47992 -10.27709 -10.22845 -9.73562 -9.73261 -9.40417 -9.35047 -8.94160 -8.88528 -8.58892 -8.41919 -6.09087 -4.19580 2.33530 2.65948 3.03802 3.21776 3.25650 3.30415 3.34698 3.84202 4.30409 4.36001 4.42558 4.69236 4.86807 4.94159 5.11968 5.17230 5.17939 5.52370 6.07018 6.21131 6.22888 6.39956 6.51816 6.64133 6.71102 6.81103 6.83560 6.87152 6.91424 6.97014 7.25167 7.46047 7.61848 7.85762 7.91364 7.92010 8.05275 8.29486 8.47721 8.80783 9.46818 10.92243 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.044771 B = 0.003749 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.251590 B = 7467.204214 C = 7713.213914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.509 4.509 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.132 3.868 13 N -0.712 5.712 14 C 0.509 3.491 15 O -0.527 6.527 16 C 0.049 3.951 17 H 0.071 0.929 18 C 0.125 3.875 19 N -0.714 5.714 20 C 0.525 3.475 21 O -0.556 6.556 22 C 0.041 3.959 23 N -0.659 5.659 24 H 0.005 0.995 25 H 0.086 0.914 26 H 0.027 0.973 27 H 0.027 0.973 28 H 0.086 0.914 29 H 0.005 0.995 30 H 0.261 0.739 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.398 0.602 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.403 0.597 37 H 0.072 0.928 38 H 0.119 0.881 39 H 0.363 0.637 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.464 2.422 12.340 12.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.547 4.547 5 H 0.076 0.924 6 C -0.134 4.134 7 N -0.524 5.524 8 Si 0.722 3.278 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.010 3.990 13 N -0.364 5.364 14 C 0.291 3.709 15 O -0.403 6.403 16 C -0.065 4.065 17 H 0.089 0.911 18 C 0.000 4.000 19 N -0.367 5.367 20 C 0.311 3.689 21 O -0.434 6.434 22 C -0.091 4.091 23 N -0.294 5.294 24 H 0.024 0.976 25 H 0.104 0.896 26 H 0.047 0.953 27 H 0.046 0.954 28 H 0.104 0.896 29 H 0.024 0.976 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.233 0.767 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.240 0.760 37 H 0.090 0.910 38 H 0.137 0.863 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -1.425 1.471 12.940 13.101 hybrid contribution 0.116 0.782 -1.256 1.484 sum -1.310 2.253 11.684 11.971 Atomic orbital electron populations 1.21837 0.97697 0.99234 1.00083 1.18359 0.92841 0.92734 0.90532 1.21837 0.98613 0.98342 1.00076 1.20932 1.31709 1.12205 0.89855 0.92443 1.24871 0.94783 0.94892 0.98873 1.69781 1.36506 1.22692 1.23433 0.86627 0.79258 0.79815 0.82131 1.20234 1.21317 1.20265 1.21780 0.98264 0.95892 0.83110 1.46352 1.52370 1.31761 1.05870 1.19931 0.81689 0.85120 0.84131 1.90727 1.37570 1.25521 1.86435 1.21785 0.94557 0.98957 0.91198 0.91132 1.21403 0.93185 1.00956 0.84492 1.45486 1.10204 1.65803 1.15177 1.20144 0.89339 0.76025 0.83371 1.90775 1.79030 1.48536 1.25049 1.22148 0.92569 0.97838 0.96513 1.60576 1.10622 1.54890 1.03325 0.97574 0.89563 0.95343 0.95413 0.89555 0.97597 0.92889 0.92522 0.92419 0.76661 0.89837 0.89244 0.76040 0.91001 0.86267 0.81657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 8.08 37.16 0.30 -2.42 16 2 C 0.06 1.21 0.50 -155.66 -0.08 1.13 16 3 C -0.13 -2.75 8.08 37.16 0.30 -2.44 16 4 C -0.51 -12.68 8.01 -34.44 -0.28 -12.96 16 5 H 0.06 1.45 7.74 -52.48 -0.41 1.04 16 6 C 0.07 1.70 5.15 -17.82 -0.09 1.61 16 7 N -0.89 -22.67 9.35 55.43 0.52 -22.16 16 8 Si 0.89 20.05 29.54 -169.99 -5.02 15.02 16 9 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 C 0.13 2.53 4.50 -4.04 -0.02 2.52 16 13 N -0.71 -10.80 4.96 -60.30 -0.30 -11.10 16 14 C 0.51 7.41 6.95 -10.99 -0.08 7.33 16 15 O -0.53 -9.74 16.42 5.55 0.09 -9.64 16 16 C 0.05 0.53 2.90 -68.84 -0.20 0.33 16 17 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 18 C 0.12 1.19 6.68 -4.32 -0.03 1.16 16 19 N -0.71 -6.97 5.52 -61.06 -0.34 -7.31 16 20 C 0.52 6.14 7.81 -11.67 -0.09 6.05 16 21 O -0.56 -8.41 17.82 5.55 0.10 -8.31 16 22 C 0.04 0.39 6.68 -5.19 -0.03 0.35 16 23 N -0.66 -7.05 6.27 -109.43 -0.69 -7.73 16 24 H 0.01 0.09 6.86 -51.92 -0.36 -0.26 16 25 H 0.09 2.03 6.07 -51.93 -0.32 1.71 16 26 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.09 2.04 6.07 -51.93 -0.32 1.72 16 29 H 0.01 0.09 6.86 -51.93 -0.36 -0.26 16 30 H 0.26 6.51 8.31 -40.82 -0.34 6.17 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.40 5.34 6.16 -40.82 -0.25 5.09 16 34 H 0.08 0.89 8.11 -51.93 -0.42 0.46 16 35 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.40 3.38 8.84 -40.82 -0.36 3.02 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.12 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.36 3.72 8.53 -39.29 -0.34 3.38 16 LS Contribution 315.19 15.07 4.75 4.75 Total: -1.00 -29.61 315.19 -6.81 -36.42 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -5.63 Total: 7.39 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -0.29 Total: 2.66 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: -0.80 Total: -48.29 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: 0.19 Total: -17.95 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.61 -6.81 -36.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316122984.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.773 kcal (2) G-P(sol) polarization free energy of solvation -29.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds