Wall clock time and date at job start Mon Mar 30 2020 05:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47153 * 2 1 4 4 C 1.50697 * 109.46480 * 239.99677 * 2 1 3 5 5 H 1.08003 * 119.99968 * 239.99279 * 4 2 1 6 6 C 1.37875 * 120.00192 * 60.00494 * 4 2 1 7 7 N 1.31516 * 120.00129 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00076 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46864 * 60.00244 * 8 6 4 10 10 H 1.48503 * 109.47135 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47377 * 299.99898 * 8 6 4 12 12 C 1.52998 * 109.47044 * 120.00113 * 2 1 3 13 13 N 1.46503 * 109.47040 * 299.99728 * 12 2 1 14 14 C 1.34774 * 120.00261 * 180.02562 * 13 12 2 15 15 O 1.21286 * 120.00011 * 0.02562 * 14 13 12 16 16 C 1.50695 * 120.00567 * 179.97438 * 14 13 12 17 17 H 1.09003 * 109.59427 * 319.70316 * 16 14 13 18 18 C 1.52980 * 109.59378 * 79.99772 * 16 14 13 19 19 N 1.46008 * 110.04479 * 170.21939 * 18 16 14 20 20 C 1.33722 * 122.92433 * 341.84475 * 19 18 16 21 21 O 1.21283 * 118.61757 * 181.66194 * 20 19 18 22 22 C 1.50249 * 122.75233 * 1.68361 * 20 19 18 23 23 N 1.46905 * 109.89276 * 342.85061 * 22 20 19 24 24 H 1.09008 * 109.46800 * 300.00401 * 1 2 3 25 25 H 1.09004 * 109.47008 * 59.99921 * 1 2 3 26 26 H 1.08992 * 109.47702 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46976 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.47229 * 299.99944 * 3 2 1 29 29 H 1.08993 * 109.47189 * 59.99876 * 3 2 1 30 30 H 0.96997 * 120.00497 * 179.97438 * 7 6 4 31 31 H 1.08995 * 109.47189 * 180.02562 * 12 2 1 32 32 H 1.09002 * 109.47155 * 59.99330 * 12 2 1 33 33 H 0.96997 * 119.99993 * 359.97438 * 13 12 2 34 34 H 1.09004 * 109.37264 * 50.04662 * 18 16 14 35 35 H 1.09002 * 109.28706 * 290.33970 * 18 16 14 36 36 H 0.96994 * 118.53904 * 161.81725 * 19 18 16 37 37 H 1.09002 * 109.38664 * 102.95675 * 22 20 19 38 38 H 1.08996 * 109.38673 * 222.75174 * 22 20 19 39 39 H 1.00901 * 110.99523 * 173.61154 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6991 -0.2395 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3222 -1.1198 -4.0079 9 1 1.8275 -2.5200 -4.0080 10 1 1.8277 -0.4194 -5.2204 11 1 3.8072 -1.1194 -4.0078 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0306 2.4454 14 6 1.8777 -0.4907 3.6695 15 8 2.5757 -1.4763 3.7809 16 6 1.3759 0.2200 4.9000 17 1 1.4271 1.2978 4.7460 18 6 -0.0719 -0.1906 5.1750 19 7 -0.4927 0.3046 6.4825 20 6 0.3723 0.6915 7.4260 21 8 -0.0624 1.0614 8.4962 22 6 1.8600 0.6876 7.2158 23 7 2.1991 -0.1521 6.0591 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.1301 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 0.7087 1.1612 -3.4844 31 1 3.1300 -0.7209 1.2495 32 1 1.6766 -1.7489 1.2493 33 1 0.9944 0.7583 2.3564 34 1 -0.1489 -1.2777 5.1582 35 1 -0.7179 0.2296 4.4041 36 1 -1.4420 0.3555 6.6752 37 1 2.2026 1.7067 7.0360 38 1 2.3501 0.2928 8.1056 39 1 3.1815 -0.0844 5.8388 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316122984.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:20 Heat of formation + Delta-G solvation = -94.380029 kcal Electronic energy + Delta-G solvation = -21045.160134 eV Core-core repulsion = 17793.512007 eV Total energy + Delta-G solvation = -3251.648127 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.64754 -40.49252 -38.30399 -37.42763 -35.09708 -34.84235 -32.84168 -31.14476 -27.51769 -27.48562 -26.97979 -26.73321 -24.74817 -21.94076 -20.63562 -20.16802 -19.07595 -18.07287 -17.74007 -17.56657 -16.97626 -16.65194 -16.53187 -16.04720 -15.60735 -15.46248 -14.90583 -14.73109 -14.53119 -14.14854 -14.04668 -13.79524 -13.25698 -13.16326 -13.03190 -12.79458 -12.61626 -12.61215 -12.21031 -12.11573 -11.44112 -11.25589 -11.15316 -10.83845 -10.65378 -10.36933 -10.22238 -9.93829 -9.70266 -8.00262 -6.15450 1.45221 1.45391 1.47474 1.52895 1.55798 2.07565 2.24285 2.48703 2.99226 3.23857 3.46502 3.59170 3.79908 3.95337 4.24048 4.42320 4.46561 4.49937 4.56588 4.74434 4.77041 5.04598 5.10299 5.13270 5.24330 5.38704 5.43612 5.61072 5.70326 5.71825 5.77239 6.05041 6.14659 6.20643 6.26082 6.46748 6.66528 6.89317 7.07987 7.28959 7.52481 8.97893 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.044771 B = 0.003749 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.251590 B = 7467.204214 C = 7713.213914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.050 3.950 3 C -0.121 4.121 4 C -0.529 4.529 5 H 0.044 0.956 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.940 3.060 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.278 1.278 12 C 0.149 3.851 13 N -0.704 5.704 14 C 0.515 3.485 15 O -0.567 6.567 16 C 0.058 3.942 17 H 0.099 0.901 18 C 0.126 3.874 19 N -0.704 5.704 20 C 0.519 3.481 21 O -0.596 6.596 22 C 0.047 3.953 23 N -0.672 5.672 24 H 0.042 0.958 25 H 0.059 0.941 26 H 0.019 0.981 27 H 0.017 0.983 28 H 0.059 0.941 29 H 0.040 0.960 30 H 0.259 0.741 31 H 0.040 0.960 32 H 0.041 0.959 33 H 0.410 0.590 34 H 0.073 0.927 35 H 0.117 0.883 36 H 0.410 0.590 37 H 0.096 0.904 38 H 0.127 0.873 39 H 0.365 0.635 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.852 3.252 13.168 13.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.050 3.950 3 C -0.179 4.179 4 C -0.568 4.568 5 H 0.063 0.937 6 C -0.170 4.170 7 N -0.536 5.536 8 Si 0.767 3.233 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.204 1.204 12 C 0.025 3.975 13 N -0.356 5.356 14 C 0.300 3.700 15 O -0.445 6.445 16 C -0.056 4.056 17 H 0.116 0.884 18 C 0.001 3.999 19 N -0.356 5.356 20 C 0.307 3.693 21 O -0.477 6.477 22 C -0.084 4.084 23 N -0.308 5.308 24 H 0.061 0.939 25 H 0.078 0.922 26 H 0.038 0.962 27 H 0.036 0.964 28 H 0.078 0.922 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.248 0.752 34 H 0.091 0.909 35 H 0.135 0.865 36 H 0.248 0.752 37 H 0.113 0.887 38 H 0.145 0.855 39 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -1.836 2.314 13.757 14.070 hybrid contribution 0.247 0.490 -1.507 1.604 sum -1.588 2.804 12.249 12.666 Atomic orbital electron populations 1.21674 0.96917 0.98771 1.00547 1.18361 0.93403 0.92972 0.90285 1.21675 0.97900 0.97862 1.00469 1.21274 1.31665 1.12177 0.91663 0.93744 1.25399 0.95193 0.95569 1.00822 1.69890 1.36953 1.23233 1.23560 0.85897 0.78618 0.78883 0.79867 1.20314 1.21061 1.20366 1.21272 0.97133 0.95163 0.83933 1.46109 1.52537 1.31917 1.05046 1.20489 0.80470 0.84392 0.84693 1.90718 1.39348 1.27462 1.87008 1.21717 0.94907 0.99797 0.89172 0.88354 1.21468 0.92937 1.00567 0.84930 1.45436 1.10545 1.64722 1.14898 1.20547 0.90379 0.75437 0.82946 1.90762 1.79779 1.50586 1.26599 1.22160 0.91052 0.98991 0.96232 1.60573 1.10877 1.55762 1.03583 0.93875 0.92230 0.96218 0.96380 0.92185 0.94069 0.93123 0.94156 0.94015 0.75205 0.90916 0.86515 0.75231 0.88672 0.85467 0.81349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.87 8.08 71.98 0.58 -4.29 16 2 C 0.05 2.13 0.50 -52.93 -0.03 2.10 16 3 C -0.12 -4.92 8.08 71.98 0.58 -4.33 16 4 C -0.53 -26.55 8.01 25.60 0.21 -26.34 16 5 H 0.04 2.28 7.74 -2.91 -0.02 2.26 16 6 C 0.03 1.52 5.15 84.65 0.44 1.96 16 7 N -0.90 -45.96 9.35 21.45 0.20 -45.76 16 8 Si 0.94 41.19 29.54 68.60 2.03 43.22 16 9 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 10 H -0.29 -12.29 7.11 99.48 0.71 -11.59 16 11 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 12 C 0.15 5.60 4.50 86.38 0.39 5.99 16 13 N -0.70 -19.60 4.96 -463.06 -2.30 -21.90 16 14 C 0.51 13.85 6.95 87.66 0.61 14.46 16 15 O -0.57 -20.39 16.42 -3.05 -0.05 -20.44 16 16 C 0.06 1.06 2.90 44.15 0.13 1.18 16 17 H 0.10 1.33 8.08 -2.39 -0.02 1.31 16 18 C 0.13 2.00 6.68 86.47 0.58 2.58 16 19 N -0.70 -11.88 5.52 -466.09 -2.57 -14.45 16 20 C 0.52 11.01 7.81 87.68 0.68 11.70 16 21 O -0.60 -17.24 17.82 -3.04 -0.05 -17.29 16 22 C 0.05 0.75 6.68 85.41 0.57 1.33 16 23 N -0.67 -12.69 6.27 -500.11 -3.14 -15.83 16 24 H 0.04 1.36 6.86 -2.38 -0.02 1.35 16 25 H 0.06 2.74 6.07 -2.39 -0.01 2.73 16 26 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.06 2.78 6.07 -2.39 -0.01 2.77 16 29 H 0.04 1.33 6.86 -2.39 -0.02 1.32 16 30 H 0.26 12.92 8.31 -92.71 -0.77 12.15 16 31 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.41 9.41 6.16 -92.71 -0.57 8.84 16 34 H 0.07 1.37 8.11 -2.39 -0.02 1.35 16 35 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.41 5.90 8.84 -92.71 -0.82 5.08 16 37 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.37 6.68 8.53 -89.69 -0.77 5.91 16 Total: -1.00 -64.28 315.19 -2.21 -66.49 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: -1.06 Total: 19.63 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: 4.74 Total: 6.34 kcal Atomic # 7 Polarization: -90.14 SS G_CDS: -7.80 Total: -97.94 kcal Atomic # 8 Polarization: -37.63 SS G_CDS: -0.10 Total: -37.73 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.22 kcal Total: -64.28 -2.21 -66.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316122984.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.895 kcal (2) G-P(sol) polarization free energy of solvation -64.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds