Wall clock time and date at job start Mon Mar 30 2020 05:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47206 * 2 1 4 4 C 1.50706 * 109.46708 * 119.99475 * 2 1 3 5 5 H 1.08000 * 119.99302 * 120.00101 * 4 2 1 6 6 C 1.37871 * 120.00436 * 299.72635 * 4 2 1 7 7 N 1.31515 * 119.99684 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00405 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47154 * 89.99418 * 8 6 4 10 10 H 1.48493 * 109.47010 * 209.99942 * 8 6 4 11 11 H 1.48502 * 109.46736 * 329.99638 * 8 6 4 12 12 C 1.52998 * 109.47322 * 239.99620 * 2 1 3 13 13 N 1.46496 * 109.47238 * 59.99965 * 12 2 1 14 14 C 1.34769 * 120.00209 * 179.97438 * 13 12 2 15 15 O 1.21283 * 120.00179 * 0.02562 * 14 13 12 16 16 C 1.50706 * 120.00318 * 180.02562 * 14 13 12 17 17 H 1.08999 * 109.59101 * 39.69913 * 16 14 13 18 18 C 1.52992 * 109.59328 * 279.24394 * 16 14 13 19 19 N 1.46004 * 110.03482 * 189.91464 * 18 16 14 20 20 C 1.33712 * 122.93056 * 18.20257 * 19 18 16 21 21 O 1.21282 * 118.62789 * 178.29107 * 20 19 18 22 22 C 1.50258 * 122.75093 * 358.26452 * 20 19 18 23 23 N 1.46900 * 109.97757 * 17.22586 * 22 20 19 24 24 H 1.09005 * 109.47120 * 300.00628 * 1 2 3 25 25 H 1.09002 * 109.46792 * 60.00402 * 1 2 3 26 26 H 1.09002 * 109.47539 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47000 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.46917 * 299.99521 * 3 2 1 29 29 H 1.08995 * 109.47505 * 59.99814 * 3 2 1 30 30 H 0.97004 * 120.00247 * 180.02562 * 7 6 4 31 31 H 1.09000 * 109.46986 * 180.02562 * 12 2 1 32 32 H 1.09002 * 109.46857 * 300.00471 * 12 2 1 33 33 H 0.97005 * 119.99809 * 0.02562 * 13 12 2 34 34 H 1.08997 * 109.37256 * 310.10977 * 18 16 14 35 35 H 1.09007 * 109.37209 * 69.75792 * 18 16 14 36 36 H 0.97008 * 118.53464 * 198.15835 * 19 18 16 37 37 H 1.09001 * 109.38913 * 257.07366 * 22 20 19 38 38 H 1.08997 * 109.38524 * 137.37989 * 22 20 19 39 39 H 1.00907 * 111.00307 * 73.06445 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6531 -1.5885 1.1315 6 6 1.7038 -0.2360 2.4828 7 7 0.9526 0.8368 2.6033 8 14 2.3270 -1.1160 4.0081 9 1 3.6381 -0.5451 4.4081 10 1 1.3520 -0.9398 5.1142 11 1 2.4860 -2.5630 3.7144 12 6 2.0400 -0.7213 -1.2492 13 7 1.5517 -0.0308 -2.4454 14 6 1.8778 -0.4910 -3.6694 15 8 2.5751 -1.4771 -3.7806 16 6 1.3759 0.2196 -4.9000 17 1 1.4172 1.2973 -4.7420 18 6 -0.0657 -0.2055 -5.1859 19 7 -0.4824 0.2882 -6.4952 20 6 0.3850 0.6853 -7.4321 21 8 -0.0459 1.0523 -8.5048 22 6 1.8712 0.6965 -7.2115 23 7 2.2133 -0.1424 -6.0551 24 1 -0.3633 0.5140 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9562 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 0.7218 1.1708 3.4843 31 1 3.1300 -0.7217 -1.2489 32 1 1.6766 -1.7490 -1.2491 33 1 0.9943 0.7581 -2.3564 34 1 -0.1315 -1.2933 -5.1714 35 1 -0.7225 0.2051 -4.4189 36 1 -1.4309 0.3294 -6.6945 37 1 2.2021 1.7186 -7.0275 38 1 2.3717 0.3101 -8.0994 39 1 2.1179 -1.1219 -6.2780 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316122986.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:23 Heat of formation + Delta-G solvation = -95.735673 kcal Electronic energy + Delta-G solvation = -21051.375631 eV Core-core repulsion = 17799.668719 eV Total energy + Delta-G solvation = -3251.706912 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.75116 -40.48134 -38.31419 -37.49104 -35.03665 -34.71971 -32.83409 -31.16976 -27.51019 -27.48875 -26.94965 -26.51501 -24.77888 -21.87172 -20.82019 -20.53063 -19.19143 -18.00700 -17.71400 -17.57803 -16.81416 -16.64508 -16.19162 -16.14284 -15.74256 -15.43520 -14.85913 -14.73415 -14.56606 -14.22147 -13.89842 -13.66029 -13.19057 -13.09472 -12.99250 -12.69144 -12.62179 -12.57475 -12.20559 -12.11100 -11.82119 -11.43386 -11.24008 -10.83828 -10.64402 -10.36776 -10.28651 -9.90646 -9.57812 -7.99952 -6.15015 1.41482 1.43754 1.47663 1.54737 1.58998 2.04574 2.19653 2.49099 3.13298 3.24181 3.39107 3.66637 3.75075 3.91772 4.25526 4.40880 4.47853 4.57328 4.60250 4.64001 4.77392 5.05842 5.11264 5.14363 5.25239 5.40076 5.41627 5.62912 5.70724 5.71402 5.72565 6.05524 6.10101 6.21329 6.26846 6.47405 6.68986 6.89953 7.02424 7.32665 7.52913 8.98397 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.045032 B = 0.003743 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.625835 B = 7478.546078 C = 7719.535913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.050 3.950 3 C -0.122 4.122 4 C -0.528 4.528 5 H 0.044 0.956 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.941 3.059 9 H -0.281 1.281 10 H -0.284 1.284 11 H -0.276 1.276 12 C 0.149 3.851 13 N -0.705 5.705 14 C 0.521 3.479 15 O -0.573 6.573 16 C 0.061 3.939 17 H 0.134 0.866 18 C 0.088 3.912 19 N -0.709 5.709 20 C 0.483 3.517 21 O -0.596 6.596 22 C 0.054 3.946 23 N -0.664 5.664 24 H 0.058 0.942 25 H 0.043 0.957 26 H 0.019 0.981 27 H 0.016 0.984 28 H 0.040 0.960 29 H 0.060 0.940 30 H 0.259 0.741 31 H 0.037 0.963 32 H 0.042 0.958 33 H 0.410 0.590 34 H 0.077 0.923 35 H 0.116 0.884 36 H 0.409 0.591 37 H 0.128 0.872 38 H 0.129 0.871 39 H 0.357 0.643 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.220 1.813 -13.879 14.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.049 3.951 3 C -0.180 4.180 4 C -0.566 4.566 5 H 0.062 0.938 6 C -0.170 4.170 7 N -0.537 5.537 8 Si 0.768 3.232 9 H -0.207 1.207 10 H -0.210 1.210 11 H -0.201 1.201 12 C 0.025 3.975 13 N -0.357 5.357 14 C 0.306 3.694 15 O -0.451 6.451 16 C -0.053 4.053 17 H 0.152 0.848 18 C -0.039 4.039 19 N -0.361 5.361 20 C 0.269 3.731 21 O -0.476 6.476 22 C -0.078 4.078 23 N -0.296 5.296 24 H 0.077 0.923 25 H 0.062 0.938 26 H 0.039 0.961 27 H 0.035 0.965 28 H 0.059 0.941 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.248 0.752 34 H 0.095 0.905 35 H 0.134 0.866 36 H 0.246 0.754 37 H 0.146 0.854 38 H 0.147 0.853 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -2.243 1.781 -14.090 14.378 hybrid contribution -1.055 -0.622 1.023 1.596 sum -3.298 1.159 -13.067 13.527 Atomic orbital electron populations 1.21660 0.96838 0.98788 1.00515 1.18366 0.93452 0.92933 0.90304 1.21682 0.97852 0.97941 1.00495 1.21303 1.31612 1.12057 0.91668 0.93780 1.25402 0.95219 0.95576 1.00835 1.69902 1.37263 1.23022 1.23483 0.85830 0.78037 0.79149 0.80206 1.20718 1.21010 1.20060 1.21250 0.97038 0.95169 0.84004 1.46082 1.52548 1.31998 1.05055 1.20474 0.80131 0.84153 0.84687 1.90690 1.39329 1.28023 1.87078 1.21811 0.90984 1.02617 0.89852 0.84841 1.22083 0.95751 1.00642 0.85381 1.45527 1.10741 1.65117 1.14752 1.21840 0.92351 0.75801 0.83072 1.90758 1.80421 1.49993 1.26427 1.22373 0.87880 1.02296 0.95263 1.60558 1.55069 1.10221 1.03757 0.92320 0.93839 0.96132 0.96515 0.94076 0.92103 0.93142 0.94439 0.93933 0.75224 0.90464 0.86561 0.75409 0.85379 0.85312 0.82305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.83 8.08 71.98 0.58 -4.25 16 2 C 0.05 2.14 0.50 -52.93 -0.03 2.11 16 3 C -0.12 -5.03 8.07 71.98 0.58 -4.45 16 4 C -0.53 -26.66 8.01 25.60 0.21 -26.45 16 5 H 0.04 2.28 7.74 -2.91 -0.02 2.26 16 6 C 0.03 1.50 5.15 84.65 0.44 1.94 16 7 N -0.90 -46.19 9.35 21.45 0.20 -45.99 16 8 Si 0.94 41.40 29.54 68.60 2.03 43.43 16 9 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 10 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 12 C 0.15 5.69 4.50 86.38 0.39 6.08 16 13 N -0.70 -19.92 4.96 -463.07 -2.30 -22.22 16 14 C 0.52 14.10 7.07 87.66 0.62 14.72 16 15 O -0.57 -20.58 16.39 -3.04 -0.05 -20.63 16 16 C 0.06 1.09 2.89 44.11 0.13 1.21 16 17 H 0.13 1.87 8.08 -2.39 -0.02 1.85 16 18 C 0.09 1.20 6.59 86.47 0.57 1.77 16 19 N -0.71 -10.59 5.52 -466.08 -2.57 -13.17 16 20 C 0.48 9.37 7.81 87.68 0.69 10.05 16 21 O -0.60 -16.54 17.82 -3.04 -0.05 -16.60 16 22 C 0.05 0.82 6.68 85.42 0.57 1.39 16 23 N -0.66 -12.24 6.29 -499.57 -3.14 -15.38 16 24 H 0.06 2.71 6.09 -2.38 -0.01 2.69 16 25 H 0.04 1.37 6.86 -2.39 -0.02 1.36 16 26 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.04 1.36 6.86 -2.39 -0.02 1.35 16 29 H 0.06 2.85 6.05 -2.39 -0.01 2.84 16 30 H 0.26 12.92 8.31 -92.71 -0.77 12.15 16 31 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.41 9.55 6.16 -92.70 -0.57 8.98 16 34 H 0.08 1.15 8.11 -2.39 -0.02 1.13 16 35 H 0.12 1.14 8.14 -2.38 -0.02 1.12 16 36 H 0.41 5.39 8.84 -92.70 -0.82 4.57 16 37 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.36 6.89 8.53 -89.69 -0.77 6.12 16 Total: -1.00 -64.38 315.18 -2.21 -66.59 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: -1.07 Total: 19.83 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: 4.74 Total: 4.13 kcal Atomic # 7 Polarization: -88.95 SS G_CDS: -7.81 Total: -96.76 kcal Atomic # 8 Polarization: -37.12 SS G_CDS: -0.10 Total: -37.22 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Total: -64.38 -2.21 -66.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316122986.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.142 kcal (2) G-P(sol) polarization free energy of solvation -64.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds