Wall clock time and date at job start Mon Mar 30 2020 05:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86800 * 120.00305 * 2 1 4 4 H 1.48494 * 109.47173 * 269.99657 * 3 2 1 5 5 H 1.48498 * 109.46927 * 29.99820 * 3 2 1 6 6 H 1.48499 * 109.47093 * 149.99751 * 3 2 1 7 7 C 1.37883 * 119.99952 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99657 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00229 * 180.02562 * 7 2 1 10 10 N 1.46497 * 109.47112 * 179.97438 * 9 7 2 11 11 C 1.34780 * 119.99750 * 179.97438 * 10 9 7 12 12 O 1.21577 * 120.00125 * 0.02562 * 11 10 9 13 13 N 1.34784 * 119.99659 * 179.97438 * 11 10 9 14 14 C 1.46497 * 119.99866 * 180.02562 * 13 11 10 15 15 H 1.08999 * 109.46961 * 325.00249 * 14 13 11 16 16 C 1.52996 * 109.47184 * 85.00020 * 14 13 11 17 17 C 1.53000 * 109.47253 * 179.97438 * 16 14 13 18 18 C 1.52996 * 109.47287 * 300.00134 * 17 16 14 19 19 C 1.53005 * 109.46976 * 59.99934 * 18 17 16 20 20 H 1.08999 * 109.47179 * 59.99811 * 19 18 17 21 21 C 1.50696 * 109.47057 * 180.02562 * 19 18 17 22 22 N 1.29042 * 120.00386 * 24.99630 * 21 19 18 23 23 O 1.34925 * 119.99635 * 204.99904 * 21 19 18 24 24 C 1.52996 * 109.47169 * 205.00453 * 14 13 11 25 25 H 0.97000 * 119.99814 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.47079 * 59.99980 * 9 7 2 27 27 H 1.08999 * 109.47212 * 299.99862 * 9 7 2 28 28 H 0.97000 * 120.00319 * 359.97438 * 10 9 7 29 29 H 0.96999 * 119.99453 * 0.02562 * 13 11 10 30 30 H 1.08999 * 109.46985 * 60.00243 * 16 14 13 31 31 H 1.09002 * 109.47367 * 300.00155 * 16 14 13 32 32 H 1.08998 * 109.47154 * 180.02562 * 17 16 14 33 33 H 1.08999 * 109.46803 * 60.00283 * 17 16 14 34 34 H 1.09004 * 109.47225 * 300.00292 * 18 17 16 35 35 H 1.08996 * 109.47214 * 179.97438 * 18 17 16 36 36 H 0.97001 * 119.99976 * 179.97438 * 22 21 19 37 37 H 0.96695 * 114.00581 * 359.97438 * 23 21 19 38 38 H 1.08998 * 109.47407 * 59.99843 * 24 14 13 39 39 H 1.08999 * 109.47012 * 299.99764 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1293 0.0014 9 6 3.5115 -1.1942 0.0011 10 7 3.9997 -2.5754 0.0022 11 6 5.3248 -2.8217 0.0024 12 8 6.1149 -1.8976 0.0021 13 7 5.7740 -4.0925 0.0039 14 6 7.2143 -4.3602 0.0047 15 1 7.7255 -3.5996 -0.5854 16 6 7.7383 -4.3282 1.4418 17 6 9.2424 -4.6085 1.4426 18 6 9.5045 -5.9879 0.8348 19 6 8.9805 -6.0198 -0.6024 20 1 9.4921 -5.2595 -1.1926 21 6 9.2382 -7.3786 -1.2009 22 7 9.3575 -8.4095 -0.4338 23 8 9.3441 -7.5174 -2.5388 24 6 7.4770 -5.7394 -0.6034 25 1 -0.4850 0.8401 -0.0004 26 1 3.8745 -0.6801 0.8912 27 1 3.8752 -0.6806 -0.8888 28 1 3.3694 -3.3127 0.0029 29 1 5.1436 -4.8296 0.0046 30 1 7.2270 -5.0888 2.0319 31 1 7.5511 -3.3457 1.8750 32 1 9.6155 -4.5862 2.4665 33 1 9.7539 -3.8482 0.8524 34 1 8.9929 -6.7482 1.4250 35 1 10.5760 -6.1873 0.8350 36 1 9.5229 -9.2841 -0.8192 37 1 9.2403 -6.6907 -3.0294 38 1 7.1037 -5.7621 -1.6272 39 1 6.9657 -6.5000 -0.0133 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334075995.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:44 Heat of formation + Delta-G solvation = -81.899866 kcal Electronic energy + Delta-G solvation = -20485.980538 eV Core-core repulsion = 17234.873592 eV Total energy + Delta-G solvation = -3251.106946 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.26677 -39.25487 -37.70610 -34.55836 -34.05677 -33.25948 -32.29234 -31.02993 -29.50225 -27.40335 -24.18329 -22.90592 -21.94561 -21.01593 -20.33246 -20.00183 -18.46281 -18.18018 -16.73393 -16.35423 -15.71758 -15.23737 -14.94218 -14.75091 -14.42029 -14.21129 -14.02198 -13.78521 -13.17520 -12.92506 -12.75524 -12.37466 -12.32201 -12.16837 -11.53792 -11.41643 -10.99371 -10.87249 -10.79421 -10.69659 -10.55977 -10.29050 -9.98846 -9.95735 -9.57094 -9.44612 -8.85713 -8.74633 -8.01560 -6.20307 -4.22154 2.02637 3.18196 3.28294 3.35386 3.43714 3.46054 3.79426 3.98918 4.34736 4.35651 4.57360 4.73345 4.87284 4.97603 5.03869 5.12641 5.15404 5.24161 5.32177 5.37742 5.51310 5.72521 5.85564 5.88987 5.99896 6.02810 6.24293 6.30301 6.75070 6.80502 7.09512 7.12354 7.25189 7.41686 7.58244 7.82566 8.29108 8.69915 8.82497 9.21588 9.41383 10.91739 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.037642 B = 0.003368 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.677542 B = 8312.579404 C = 8616.684990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.077 3.923 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.542 4.542 8 H 0.079 0.921 9 C 0.239 3.761 10 N -0.723 5.723 11 C 0.696 3.304 12 O -0.603 6.603 13 N -0.752 5.752 14 C 0.170 3.830 15 H 0.088 0.912 16 C -0.133 4.133 17 C -0.118 4.118 18 C -0.098 4.098 19 C -0.059 4.059 20 H 0.095 0.905 21 C 0.361 3.639 22 N -0.690 5.690 23 O -0.529 6.529 24 C -0.118 4.118 25 H 0.267 0.733 26 H 0.023 0.977 27 H 0.018 0.982 28 H 0.392 0.608 29 H 0.393 0.607 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.064 0.936 36 H 0.338 0.662 37 H 0.402 0.598 38 H 0.072 0.928 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.484 -13.709 -1.679 23.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.127 4.127 3 Si 0.704 3.296 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.580 4.580 8 H 0.097 0.903 9 C 0.116 3.884 10 N -0.375 5.375 11 C 0.395 3.605 12 O -0.483 6.483 13 N -0.408 5.408 14 C 0.064 3.936 15 H 0.106 0.894 16 C -0.172 4.172 17 C -0.157 4.157 18 C -0.136 4.136 19 C -0.079 4.079 20 H 0.113 0.887 21 C 0.128 3.872 22 N -0.330 5.330 23 O -0.325 6.325 24 C -0.157 4.157 25 H 0.077 0.923 26 H 0.041 0.959 27 H 0.036 0.964 28 H 0.225 0.775 29 H 0.226 0.774 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.155 0.845 37 H 0.256 0.744 38 H 0.090 0.910 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 19.053 -13.336 -0.700 23.267 hybrid contribution -0.317 0.273 -1.235 1.304 sum 18.736 -13.063 -1.935 22.922 Atomic orbital electron populations 1.69879 1.06232 1.27412 1.49579 1.24787 0.94782 0.99179 0.93907 0.86806 0.80613 0.83182 0.79034 1.19875 1.20954 1.18414 1.21102 0.88610 0.95175 1.53157 0.90325 1.19346 0.94781 0.77678 0.96594 1.45410 1.03780 1.11033 1.77308 1.16118 0.83519 0.82739 0.78100 1.90854 1.55351 1.43180 1.58901 1.45179 1.07093 1.06613 1.81907 1.20592 0.80916 0.95620 0.96437 0.89422 1.21999 0.95381 1.02827 0.97006 1.21543 0.96170 0.96608 1.01332 1.21419 1.01133 0.97883 0.93138 1.20613 0.97505 0.90524 0.99273 0.88665 1.24237 0.87888 0.95842 0.79197 1.70012 1.24273 1.03050 1.35706 1.85000 1.87658 1.40376 1.19439 1.21807 0.93991 0.97773 1.02129 0.92279 0.95942 0.96406 0.77482 0.77426 0.91753 0.90898 0.91349 0.91723 0.90025 0.91676 0.84451 0.74377 0.90978 0.90365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.53 13.96 55.43 0.77 -25.76 16 2 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 3 Si 0.88 21.43 27.47 -169.99 -4.67 16.76 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 7 C -0.54 -14.88 9.83 -34.44 -0.34 -15.21 16 8 H 0.08 2.24 7.84 -52.49 -0.41 1.83 16 9 C 0.24 5.89 4.50 -5.20 -0.02 5.87 16 10 N -0.72 -14.63 5.55 -66.41 -0.37 -15.00 16 11 C 0.70 13.19 8.53 -86.91 -0.74 12.45 16 12 O -0.60 -13.74 16.01 5.30 0.08 -13.65 16 13 N -0.75 -10.05 5.08 -58.68 -0.30 -10.35 16 14 C 0.17 1.89 2.45 -67.94 -0.17 1.72 16 15 H 0.09 1.11 7.58 -51.93 -0.39 0.72 16 16 C -0.13 -1.46 5.49 -26.73 -0.15 -1.60 16 17 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 18 C -0.10 -0.78 4.69 -26.73 -0.13 -0.90 16 19 C -0.06 -0.41 2.37 -91.80 -0.22 -0.63 16 20 H 0.10 0.50 8.12 -51.93 -0.42 0.08 16 21 C 0.36 2.95 7.39 -13.45 -0.10 2.85 16 22 N -0.69 -6.82 12.86 32.47 0.42 -6.40 16 23 O -0.53 -3.74 13.59 -16.50 -0.22 -3.96 16 24 C -0.12 -0.94 4.65 -26.76 -0.12 -1.06 16 25 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 26 H 0.02 0.59 7.20 -51.93 -0.37 0.22 16 27 H 0.02 0.46 7.57 -51.93 -0.39 0.07 16 28 H 0.39 6.96 8.34 -40.82 -0.34 6.62 16 29 H 0.39 4.25 8.62 -40.82 -0.35 3.90 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.74 7.79 -51.93 -0.40 0.34 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.34 3.17 8.90 -40.82 -0.36 2.81 16 37 H 0.40 0.98 8.80 45.56 0.40 1.38 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 322.64 15.07 4.86 4.86 Total: -1.00 -34.23 322.64 -6.84 -41.07 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -5.18 Total: 8.04 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: -2.24 Total: 4.38 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: 0.52 Total: -57.51 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -0.14 Total: -17.61 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.76 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.23 -6.84 -41.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334075995.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.827 kcal (2) G-P(sol) polarization free energy of solvation -34.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds