Wall clock time and date at job start Mon Mar 30 2020 05:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86800 * 120.00305 * 2 1 4 4 H 1.48494 * 109.47173 * 269.99657 * 3 2 1 5 5 H 1.48498 * 109.46927 * 29.99820 * 3 2 1 6 6 H 1.48499 * 109.47093 * 149.99751 * 3 2 1 7 7 C 1.37883 * 119.99952 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99657 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00229 * 180.02562 * 7 2 1 10 10 N 1.46497 * 109.47112 * 179.97438 * 9 7 2 11 11 C 1.34780 * 119.99750 * 179.97438 * 10 9 7 12 12 O 1.21577 * 120.00125 * 0.02562 * 11 10 9 13 13 N 1.34784 * 119.99659 * 179.97438 * 11 10 9 14 14 C 1.46497 * 119.99866 * 180.02562 * 13 11 10 15 15 H 1.08999 * 109.46961 * 325.00249 * 14 13 11 16 16 C 1.52996 * 109.47184 * 85.00020 * 14 13 11 17 17 C 1.53000 * 109.47253 * 179.97438 * 16 14 13 18 18 C 1.52996 * 109.47287 * 300.00134 * 17 16 14 19 19 C 1.53005 * 109.46976 * 59.99934 * 18 17 16 20 20 H 1.08999 * 109.47179 * 59.99811 * 19 18 17 21 21 C 1.50696 * 109.47057 * 180.02562 * 19 18 17 22 22 N 1.29042 * 120.00386 * 24.99630 * 21 19 18 23 23 O 1.34925 * 119.99635 * 204.99904 * 21 19 18 24 24 C 1.52996 * 109.47169 * 205.00453 * 14 13 11 25 25 H 0.97000 * 119.99814 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.47079 * 59.99980 * 9 7 2 27 27 H 1.08999 * 109.47212 * 299.99862 * 9 7 2 28 28 H 0.97000 * 120.00319 * 359.97438 * 10 9 7 29 29 H 0.96999 * 119.99453 * 0.02562 * 13 11 10 30 30 H 1.08999 * 109.46985 * 60.00243 * 16 14 13 31 31 H 1.09002 * 109.47367 * 300.00155 * 16 14 13 32 32 H 1.08998 * 109.47154 * 180.02562 * 17 16 14 33 33 H 1.08999 * 109.46803 * 60.00283 * 17 16 14 34 34 H 1.09004 * 109.47225 * 300.00292 * 18 17 16 35 35 H 1.08996 * 109.47214 * 179.97438 * 18 17 16 36 36 H 0.97001 * 119.99976 * 179.97438 * 22 21 19 37 37 H 0.96695 * 114.00581 * 359.97438 * 23 21 19 38 38 H 1.08998 * 109.47407 * 59.99843 * 24 14 13 39 39 H 1.08999 * 109.47012 * 299.99764 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1293 0.0014 9 6 3.5115 -1.1942 0.0011 10 7 3.9997 -2.5754 0.0022 11 6 5.3248 -2.8217 0.0024 12 8 6.1149 -1.8976 0.0021 13 7 5.7740 -4.0925 0.0039 14 6 7.2143 -4.3602 0.0047 15 1 7.7255 -3.5996 -0.5854 16 6 7.7383 -4.3282 1.4418 17 6 9.2424 -4.6085 1.4426 18 6 9.5045 -5.9879 0.8348 19 6 8.9805 -6.0198 -0.6024 20 1 9.4921 -5.2595 -1.1926 21 6 9.2382 -7.3786 -1.2009 22 7 9.3575 -8.4095 -0.4338 23 8 9.3441 -7.5174 -2.5388 24 6 7.4770 -5.7394 -0.6034 25 1 -0.4850 0.8401 -0.0004 26 1 3.8745 -0.6801 0.8912 27 1 3.8752 -0.6806 -0.8888 28 1 3.3694 -3.3127 0.0029 29 1 5.1436 -4.8296 0.0046 30 1 7.2270 -5.0888 2.0319 31 1 7.5511 -3.3457 1.8750 32 1 9.6155 -4.5862 2.4665 33 1 9.7539 -3.8482 0.8524 34 1 8.9929 -6.7482 1.4250 35 1 10.5760 -6.1873 0.8350 36 1 9.5229 -9.2841 -0.8192 37 1 9.2403 -6.6907 -3.0294 38 1 7.1037 -5.7621 -1.6272 39 1 6.9657 -6.5000 -0.0133 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334075995.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:43 Heat of formation + Delta-G solvation = -112.399434 kcal Electronic energy + Delta-G solvation = -20487.303098 eV Core-core repulsion = 17234.873592 eV Total energy + Delta-G solvation = -3252.429507 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.27040 -40.31047 -38.57115 -36.14739 -35.31818 -34.41996 -33.96896 -31.74185 -30.74544 -29.08877 -24.95479 -24.35175 -23.16113 -22.06094 -21.52700 -20.84974 -19.78795 -19.08239 -18.28236 -17.61984 -16.91063 -16.43777 -16.21849 -15.90511 -15.57169 -15.28424 -15.07958 -14.88843 -14.58475 -14.38524 -14.19107 -13.67183 -13.38113 -13.06863 -12.99296 -12.68468 -12.24837 -12.18431 -11.90703 -11.67383 -11.60967 -11.47397 -11.38699 -11.15607 -10.94330 -10.89773 -10.60835 -10.20850 -9.61320 -8.38085 -6.44816 1.35314 1.36969 1.39903 1.50684 1.92240 2.26759 2.30766 2.86177 2.97802 3.44925 3.48819 3.73096 3.97494 4.05091 4.14063 4.24907 4.43520 4.49176 4.55315 4.65582 4.78153 4.83627 5.02295 5.08509 5.14331 5.19800 5.20240 5.27930 5.31265 5.37324 5.56312 5.59549 5.68704 6.01954 6.32622 6.57841 6.72181 7.16899 7.21075 7.31069 7.72706 8.76757 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.037642 B = 0.003368 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.677542 B = 8312.579404 C = 8616.684990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.026 3.974 3 Si 0.939 3.061 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.252 3.748 10 N -0.724 5.724 11 C 0.696 3.304 12 O -0.641 6.641 13 N -0.731 5.731 14 C 0.168 3.832 15 H 0.076 0.924 16 C -0.130 4.130 17 C -0.111 4.111 18 C -0.092 4.092 19 C -0.053 4.053 20 H 0.120 0.880 21 C 0.370 3.630 22 N -0.718 5.718 23 O -0.536 6.536 24 C -0.106 4.106 25 H 0.272 0.728 26 H 0.009 0.991 27 H 0.010 0.990 28 H 0.404 0.596 29 H 0.408 0.592 30 H 0.068 0.932 31 H 0.039 0.961 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.337 0.663 37 H 0.422 0.578 38 H 0.087 0.913 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.028 -14.172 -2.358 24.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.174 4.174 3 Si 0.762 3.238 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.184 1.184 7 C -0.583 4.583 8 H 0.076 0.924 9 C 0.128 3.872 10 N -0.378 5.378 11 C 0.395 3.605 12 O -0.524 6.524 13 N -0.387 5.387 14 C 0.063 3.937 15 H 0.094 0.906 16 C -0.169 4.169 17 C -0.149 4.149 18 C -0.130 4.130 19 C -0.073 4.073 20 H 0.138 0.862 21 C 0.138 3.862 22 N -0.359 5.359 23 O -0.334 6.334 24 C -0.145 4.145 25 H 0.081 0.919 26 H 0.027 0.973 27 H 0.028 0.972 28 H 0.239 0.761 29 H 0.244 0.756 30 H 0.086 0.914 31 H 0.058 0.942 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.154 0.846 37 H 0.280 0.720 38 H 0.106 0.894 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 20.605 -13.857 -1.395 24.870 hybrid contribution -0.793 0.333 -1.036 1.347 sum 19.812 -13.523 -2.432 24.110 Atomic orbital electron populations 1.69981 1.07732 1.28611 1.50837 1.25598 0.95534 1.02718 0.93599 0.85838 0.79246 0.79197 0.79500 1.18877 1.19925 1.18405 1.21296 0.90022 0.94530 1.52500 0.92374 1.18919 0.92885 0.79943 0.95457 1.45136 1.04826 1.09814 1.78008 1.16214 0.82542 0.83994 0.77702 1.90826 1.56065 1.44949 1.60531 1.45044 1.08636 1.05004 1.79980 1.20778 0.79017 0.97204 0.96681 0.90618 1.21946 0.97314 1.01032 0.96647 1.21485 0.94252 0.97248 1.01940 1.21335 1.01413 0.96744 0.93481 1.20611 0.96852 0.90753 0.99095 0.86214 1.24227 0.86837 0.95575 0.79592 1.70019 1.25735 1.03462 1.36704 1.84972 1.87329 1.42130 1.19007 1.21689 0.94863 0.95287 1.02657 0.91864 0.97320 0.97205 0.76103 0.75592 0.91362 0.94184 0.90892 0.91314 0.91123 0.91086 0.84588 0.72014 0.89446 0.90369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.73 13.96 21.45 0.30 -55.43 16 2 C 0.03 1.45 5.47 84.66 0.46 1.91 16 3 Si 0.94 44.01 27.47 68.60 1.88 45.90 16 4 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 6 H -0.26 -12.10 6.54 99.48 0.65 -11.45 16 7 C -0.55 -30.13 9.83 25.60 0.25 -29.88 16 8 H 0.06 3.37 7.84 -2.91 -0.02 3.35 16 9 C 0.25 12.43 4.50 85.63 0.38 12.81 16 10 N -0.72 -28.98 5.55 -482.30 -2.68 -31.66 16 11 C 0.70 25.88 8.53 179.05 1.53 27.41 16 12 O -0.64 -29.03 16.01 -3.96 -0.06 -29.10 16 13 N -0.73 -18.44 5.08 -457.83 -2.33 -20.76 16 14 C 0.17 3.44 2.45 44.99 0.11 3.55 16 15 H 0.08 1.80 7.58 -2.39 -0.02 1.78 16 16 C -0.13 -2.72 5.49 30.59 0.17 -2.55 16 17 C -0.11 -1.73 5.92 30.59 0.18 -1.55 16 18 C -0.09 -1.25 4.69 30.59 0.14 -1.11 16 19 C -0.05 -0.59 2.37 -11.56 -0.03 -0.62 16 20 H 0.12 0.81 8.12 -2.39 -0.02 0.79 16 21 C 0.37 5.08 7.39 88.52 0.65 5.74 16 22 N -0.72 -12.97 12.86 -166.06 -2.14 -15.11 16 23 O -0.54 -6.03 13.59 -81.94 -1.11 -7.14 16 24 C -0.11 -1.39 4.65 30.58 0.14 -1.25 16 25 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 26 H 0.01 0.46 7.20 -2.38 -0.02 0.44 16 27 H 0.01 0.51 7.57 -2.39 -0.02 0.49 16 28 H 0.40 14.09 8.34 -92.71 -0.77 13.32 16 29 H 0.41 7.97 8.62 -92.71 -0.80 7.17 16 30 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.07 1.16 7.79 -2.38 -0.02 1.14 16 35 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.34 5.94 8.90 -92.71 -0.83 5.11 16 37 H 0.42 0.59 8.80 -74.06 -0.65 -0.06 16 38 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -73.70 322.64 -4.14 -77.84 By element: Atomic # 1 Polarization: 23.00 SS G_CDS: -2.01 Total: 21.00 kcal Atomic # 6 Polarization: 10.47 SS G_CDS: 4.00 Total: 14.46 kcal Atomic # 7 Polarization: -116.12 SS G_CDS: -6.84 Total: -122.96 kcal Atomic # 8 Polarization: -35.06 SS G_CDS: -1.18 Total: -36.24 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.88 Total: 45.90 kcal Total: -73.70 -4.14 -77.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334075995.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.563 kcal (2) G-P(sol) polarization free energy of solvation -73.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds