Wall clock time and date at job start Mon Mar 30 2020 05:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 110.00284 * 2 1 4 4 C 1.54330 * 109.88292 * 238.90538 * 2 1 3 5 5 C 1.55155 * 102.94292 * 218.39370 * 4 2 1 6 6 C 1.54907 * 101.58383 * 35.49718 * 5 4 2 7 7 N 1.47026 * 109.88297 * 121.09986 * 2 1 3 8 8 C 1.34780 * 125.64391 * 298.39213 * 7 2 1 9 9 O 1.21580 * 120.00103 * 359.97438 * 8 7 2 10 10 N 1.34771 * 119.99673 * 180.02562 * 8 7 2 11 11 C 1.46501 * 120.00143 * 179.97438 * 10 8 7 12 12 C 1.50698 * 109.47336 * 179.97438 * 11 10 8 13 13 O 1.21284 * 120.00050 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00041 * 179.97438 * 12 11 10 15 15 C 1.37095 * 120.00241 * 180.02562 * 14 12 11 16 16 H 1.07996 * 119.99722 * 0.02562 * 15 14 12 17 17 C 1.38952 * 120.00159 * 180.02562 * 15 14 12 18 18 N 1.31410 * 119.99843 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99966 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.46754 * 90.00209 * 19 17 15 21 21 H 1.48494 * 109.47142 * 210.00124 * 19 17 15 22 22 H 1.48500 * 109.47363 * 330.00118 * 19 17 15 23 23 H 1.08994 * 109.46761 * 300.35866 * 1 2 3 24 24 H 1.08996 * 109.46781 * 60.35708 * 1 2 3 25 25 H 1.09001 * 109.47129 * 180.35483 * 1 2 3 26 26 H 1.08992 * 109.47824 * 179.64156 * 3 2 1 27 27 H 1.09003 * 109.47081 * 299.64858 * 3 2 1 28 28 H 1.09003 * 109.46640 * 59.63890 * 3 2 1 29 29 H 1.08998 * 110.71700 * 336.75297 * 4 2 1 30 30 H 1.08991 * 110.72004 * 100.02588 * 4 2 1 31 31 H 1.09001 * 111.00015 * 277.42463 * 5 4 2 32 32 H 1.09000 * 111.00890 * 153.57681 * 5 4 2 33 33 H 1.08997 * 110.36783 * 204.15179 * 6 5 4 34 34 H 1.08997 * 110.45914 * 81.87830 * 6 5 4 35 35 H 0.97002 * 120.00640 * 0.02562 * 10 8 7 36 36 H 1.09002 * 109.47274 * 300.00670 * 11 10 8 37 37 H 1.09004 * 109.46577 * 60.00190 * 11 10 8 38 38 H 0.97008 * 120.00129 * 0.02562 * 14 12 11 39 39 H 0.97005 * 119.99749 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0534 1.4377 0.0000 4 6 2.0549 -0.7495 -1.2428 5 6 3.2876 -1.5143 -0.6924 6 6 2.8145 -1.8795 0.7367 7 7 2.0301 -0.7142 1.1839 8 6 1.8074 -0.3621 2.4657 9 8 1.1420 0.6235 2.7186 10 7 2.3233 -1.1021 3.4670 11 6 2.0818 -0.7192 4.8603 12 6 2.7617 -1.7035 5.7769 13 8 3.3868 -2.6330 5.3120 14 7 2.6759 -1.5502 7.1131 15 6 3.2948 -2.4453 7.9470 16 1 3.8514 -3.2730 7.5330 17 6 3.2059 -2.2875 9.3246 18 7 3.7995 -3.1453 10.1238 19 14 2.2436 -0.8555 10.0406 20 1 0.8301 -1.2621 10.2456 21 1 2.8389 -0.4607 11.3425 22 1 2.2968 0.2948 9.1029 23 1 -0.3632 0.5194 0.8867 24 1 -0.3633 0.5083 -0.8932 25 1 -0.3633 -1.0277 0.0064 26 1 3.1432 1.4277 0.0064 27 1 1.7000 1.9530 -0.8931 28 1 1.6895 1.9567 0.8868 29 1 1.3052 -1.4459 -1.6183 30 1 2.3529 -0.0460 -2.0201 31 1 4.1654 -0.8689 -0.6605 32 1 3.4852 -2.4111 -1.2797 33 1 3.6716 -2.0339 1.3921 34 1 2.1891 -2.7719 0.7147 35 1 2.8551 -1.8878 3.2653 36 1 2.4820 0.2791 5.0374 37 1 1.0096 -0.7210 5.0569 38 1 2.1762 -0.8065 7.4850 39 1 3.7371 -3.0353 11.0856 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334339919.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:25 Heat of formation + Delta-G solvation = -63.278008 kcal Electronic energy + Delta-G solvation = -20934.692759 eV Core-core repulsion = 17684.393317 eV Total energy + Delta-G solvation = -3250.299442 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.55904 -38.72470 -37.62693 -34.55249 -33.85576 -32.45873 -31.80273 -31.54970 -27.62228 -27.37147 -25.67872 -24.35840 -22.55583 -20.98496 -19.69311 -19.24491 -18.40562 -17.45770 -16.40800 -15.78119 -15.46498 -15.10857 -14.99217 -14.37521 -14.18495 -13.96718 -13.58245 -13.42136 -13.16150 -13.05866 -12.74999 -12.45969 -12.21276 -12.15770 -12.01512 -11.86946 -11.47569 -11.30889 -11.22147 -10.87130 -10.77425 -10.63261 -10.05575 -9.85786 -9.68806 -8.93543 -8.75333 -8.45666 -8.29219 -6.39987 -3.92456 2.65392 3.00749 3.05441 3.13371 3.36268 3.59322 4.01864 4.05127 4.35948 4.43257 4.60921 4.68224 4.96272 5.03991 5.14369 5.15254 5.37555 5.46287 5.51781 5.57155 5.62572 5.67236 5.70777 5.79616 5.82666 5.85813 5.88950 5.94295 6.14305 6.28595 6.48112 6.70534 7.20901 7.46060 8.01509 8.17900 8.45618 8.79279 8.82799 9.30949 9.64902 10.72232 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.038427 B = 0.003832 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.477675 B = 7304.371864 C = 7811.357499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.179 3.821 3 C -0.157 4.157 4 C -0.124 4.124 5 C -0.130 4.130 6 C 0.096 3.904 7 N -0.631 5.631 8 C 0.725 3.275 9 O -0.593 6.593 10 N -0.725 5.725 11 C 0.126 3.874 12 C 0.439 3.561 13 O -0.580 6.580 14 N -0.577 5.577 15 C -0.310 4.310 16 H 0.121 0.879 17 C 0.045 3.955 18 N -0.875 5.875 19 Si 0.879 3.121 20 H -0.269 1.269 21 H -0.275 1.275 22 H -0.267 1.267 23 H 0.073 0.927 24 H 0.060 0.940 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.407 0.593 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.374 0.626 39 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.380 6.504 -20.621 22.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.094 3.906 3 C -0.215 4.215 4 C -0.162 4.162 5 C -0.169 4.169 6 C -0.027 4.027 7 N -0.369 5.369 8 C 0.427 3.573 9 O -0.472 6.472 10 N -0.383 5.383 11 C -0.002 4.002 12 C 0.225 3.775 13 O -0.464 6.464 14 N -0.214 5.214 15 C -0.438 4.438 16 H 0.139 0.861 17 C -0.159 4.159 18 N -0.514 5.514 19 Si 0.705 3.295 20 H -0.194 1.194 21 H -0.200 1.200 22 H -0.192 1.192 23 H 0.092 0.908 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.245 0.755 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.208 0.792 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.402 6.539 -20.374 21.845 hybrid contribution -0.398 0.600 0.781 1.062 sum -4.799 7.138 -19.593 21.398 Atomic orbital electron populations 1.22168 0.94358 1.02076 1.02909 1.20773 0.94001 0.92235 0.83582 1.22166 1.00956 0.95426 1.02950 1.22761 0.97745 0.99429 0.96298 1.22736 0.98027 1.00899 0.95193 1.22297 0.95451 0.89054 0.95907 1.47644 1.56177 1.29556 1.03569 1.15324 0.80073 0.82697 0.79234 1.90860 1.45139 1.28532 1.82646 1.44809 1.57168 1.31944 1.04378 1.20793 1.00931 0.98185 0.80301 1.19666 0.86454 0.88286 0.83089 1.90527 1.46250 1.34460 1.75153 1.42115 1.47634 1.26514 1.05176 1.19439 1.29700 1.07526 0.87173 0.86110 1.25060 0.97359 0.97679 0.95792 1.69620 1.42051 1.35498 1.04237 0.86671 0.80784 0.82161 0.79888 1.19387 1.19993 1.19198 0.90827 0.92059 0.92724 0.92734 0.92132 0.90673 0.90463 0.89998 0.90553 0.89848 0.90559 0.91406 0.75507 0.89947 0.89933 0.79228 0.91402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 8.42 37.16 0.31 -1.40 16 2 C 0.18 1.94 0.83 -130.84 -0.11 1.83 16 3 C -0.16 -1.72 8.37 37.16 0.31 -1.41 16 4 C -0.12 -0.95 6.02 -24.89 -0.15 -1.10 16 5 C -0.13 -0.99 7.08 -24.58 -0.17 -1.17 16 6 C 0.10 0.99 6.57 -2.53 -0.02 0.98 16 7 N -0.63 -8.24 2.82 -161.45 -0.46 -8.69 16 8 C 0.72 12.02 8.06 -86.92 -0.70 11.32 16 9 O -0.59 -11.24 13.95 5.30 0.07 -11.16 16 10 N -0.72 -12.38 5.49 -66.41 -0.36 -12.75 16 11 C 0.13 2.28 6.15 -5.19 -0.03 2.25 16 12 C 0.44 9.82 7.85 -10.99 -0.09 9.74 16 13 O -0.58 -14.80 15.24 5.55 0.08 -14.72 16 14 N -0.58 -13.56 5.09 -10.97 -0.06 -13.62 16 15 C -0.31 -8.60 10.16 -14.93 -0.15 -8.75 16 16 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 17 C 0.05 1.22 5.50 -17.47 -0.10 1.12 16 18 N -0.88 -25.09 13.96 55.50 0.77 -24.31 16 19 Si 0.88 19.14 27.74 -169.99 -4.71 14.42 16 20 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 21 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 22 H -0.27 -5.33 6.52 56.52 0.37 -4.96 16 23 H 0.07 1.01 6.88 -51.93 -0.36 0.65 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 1.04 6.74 -51.93 -0.35 0.69 16 29 H 0.08 0.53 7.85 -51.93 -0.41 0.12 16 30 H 0.08 0.51 7.83 -51.93 -0.41 0.11 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.82 7.30 -51.93 -0.38 0.44 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.41 6.90 5.92 -40.82 -0.24 6.66 16 36 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 37 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 38 H 0.37 7.79 5.76 -40.82 -0.24 7.56 16 39 H 0.28 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 317.28 15.07 4.78 4.78 Total: -1.00 -32.48 317.28 -6.51 -38.99 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: -5.74 Total: 13.64 kcal Atomic # 6 Polarization: 14.31 SS G_CDS: -0.89 Total: 13.42 kcal Atomic # 7 Polarization: -59.27 SS G_CDS: -0.10 Total: -59.37 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: 0.16 Total: -25.88 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -4.71 Total: 14.42 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.48 -6.51 -38.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334339919.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.289 kcal (2) G-P(sol) polarization free energy of solvation -32.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds