Wall clock time and date at job start Mon Mar 30 2020 05:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 110.00284 * 2 1 4 4 C 1.54330 * 109.88292 * 238.90538 * 2 1 3 5 5 C 1.55155 * 102.94292 * 218.39370 * 4 2 1 6 6 C 1.54907 * 101.58383 * 35.49718 * 5 4 2 7 7 N 1.47026 * 109.88297 * 121.09986 * 2 1 3 8 8 C 1.34780 * 125.64391 * 298.39213 * 7 2 1 9 9 O 1.21580 * 120.00103 * 359.97438 * 8 7 2 10 10 N 1.34771 * 119.99673 * 180.02562 * 8 7 2 11 11 C 1.46501 * 120.00143 * 179.97438 * 10 8 7 12 12 C 1.50698 * 109.47336 * 179.97438 * 11 10 8 13 13 O 1.21284 * 120.00050 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00041 * 179.97438 * 12 11 10 15 15 C 1.37095 * 120.00241 * 180.02562 * 14 12 11 16 16 H 1.07996 * 119.99722 * 0.02562 * 15 14 12 17 17 C 1.38952 * 120.00159 * 180.02562 * 15 14 12 18 18 N 1.31410 * 119.99843 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99966 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.46754 * 90.00209 * 19 17 15 21 21 H 1.48494 * 109.47142 * 210.00124 * 19 17 15 22 22 H 1.48500 * 109.47363 * 330.00118 * 19 17 15 23 23 H 1.08994 * 109.46761 * 300.35866 * 1 2 3 24 24 H 1.08996 * 109.46781 * 60.35708 * 1 2 3 25 25 H 1.09001 * 109.47129 * 180.35483 * 1 2 3 26 26 H 1.08992 * 109.47824 * 179.64156 * 3 2 1 27 27 H 1.09003 * 109.47081 * 299.64858 * 3 2 1 28 28 H 1.09003 * 109.46640 * 59.63890 * 3 2 1 29 29 H 1.08998 * 110.71700 * 336.75297 * 4 2 1 30 30 H 1.08991 * 110.72004 * 100.02588 * 4 2 1 31 31 H 1.09001 * 111.00015 * 277.42463 * 5 4 2 32 32 H 1.09000 * 111.00890 * 153.57681 * 5 4 2 33 33 H 1.08997 * 110.36783 * 204.15179 * 6 5 4 34 34 H 1.08997 * 110.45914 * 81.87830 * 6 5 4 35 35 H 0.97002 * 120.00640 * 0.02562 * 10 8 7 36 36 H 1.09002 * 109.47274 * 300.00670 * 11 10 8 37 37 H 1.09004 * 109.46577 * 60.00190 * 11 10 8 38 38 H 0.97008 * 120.00129 * 0.02562 * 14 12 11 39 39 H 0.97005 * 119.99749 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0534 1.4377 0.0000 4 6 2.0549 -0.7495 -1.2428 5 6 3.2876 -1.5143 -0.6924 6 6 2.8145 -1.8795 0.7367 7 7 2.0301 -0.7142 1.1839 8 6 1.8074 -0.3621 2.4657 9 8 1.1420 0.6235 2.7186 10 7 2.3233 -1.1021 3.4670 11 6 2.0818 -0.7192 4.8603 12 6 2.7617 -1.7035 5.7769 13 8 3.3868 -2.6330 5.3120 14 7 2.6759 -1.5502 7.1131 15 6 3.2948 -2.4453 7.9470 16 1 3.8514 -3.2730 7.5330 17 6 3.2059 -2.2875 9.3246 18 7 3.7995 -3.1453 10.1238 19 14 2.2436 -0.8555 10.0406 20 1 0.8301 -1.2621 10.2456 21 1 2.8389 -0.4607 11.3425 22 1 2.2968 0.2948 9.1029 23 1 -0.3632 0.5194 0.8867 24 1 -0.3633 0.5083 -0.8932 25 1 -0.3633 -1.0277 0.0064 26 1 3.1432 1.4277 0.0064 27 1 1.7000 1.9530 -0.8931 28 1 1.6895 1.9567 0.8868 29 1 1.3052 -1.4459 -1.6183 30 1 2.3529 -0.0460 -2.0201 31 1 4.1654 -0.8689 -0.6605 32 1 3.4852 -2.4111 -1.2797 33 1 3.6716 -2.0339 1.3921 34 1 2.1891 -2.7719 0.7147 35 1 2.8551 -1.8878 3.2653 36 1 2.4820 0.2791 5.0374 37 1 1.0096 -0.7210 5.0569 38 1 2.1762 -0.8065 7.4850 39 1 3.7371 -3.0353 11.0856 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334339919.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:24 Heat of formation + Delta-G solvation = -87.360372 kcal Electronic energy + Delta-G solvation = -20935.737048 eV Core-core repulsion = 17684.393317 eV Total energy + Delta-G solvation = -3251.343732 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.66290 -40.42454 -38.85220 -36.30610 -35.44510 -33.87346 -33.40859 -32.45601 -29.20912 -28.22803 -26.54519 -26.15592 -23.51964 -21.93357 -21.43372 -20.79469 -20.08314 -18.59708 -17.51848 -17.33833 -16.93264 -16.72699 -16.34436 -15.82781 -15.58971 -14.98228 -14.88154 -14.53147 -14.31398 -14.22564 -14.07814 -13.98382 -13.72915 -13.37203 -13.00523 -12.94664 -12.69652 -12.45892 -12.33464 -12.03206 -12.00883 -11.60133 -11.59535 -11.51226 -11.09825 -10.67460 -10.35443 -10.25630 -9.52112 -8.46701 -6.08729 1.30453 1.33295 1.42769 1.51269 1.76746 2.11442 2.19601 2.70109 3.05896 3.09578 3.62652 3.66867 3.97979 3.99955 4.20913 4.21602 4.36431 4.41470 4.43142 4.61204 4.70093 4.76645 4.81888 4.95843 4.97924 5.05131 5.13523 5.22223 5.27784 5.32766 5.44670 5.48904 5.59161 5.86627 6.06823 6.47585 6.76448 6.93915 7.26655 7.52759 7.76251 8.69732 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.038427 B = 0.003832 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.477675 B = 7304.371864 C = 7811.357499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.166 3.834 3 C -0.152 4.152 4 C -0.114 4.114 5 C -0.121 4.121 6 C 0.086 3.914 7 N -0.630 5.630 8 C 0.720 3.280 9 O -0.620 6.620 10 N -0.730 5.730 11 C 0.139 3.861 12 C 0.446 3.554 13 O -0.614 6.614 14 N -0.577 5.577 15 C -0.332 4.332 16 H 0.064 0.936 17 C -0.006 4.006 18 N -0.925 5.925 19 Si 0.958 3.042 20 H -0.256 1.256 21 H -0.272 1.272 22 H -0.234 1.234 23 H 0.039 0.961 24 H 0.086 0.914 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.086 0.914 28 H 0.040 0.960 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.076 0.924 32 H 0.108 0.892 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.406 0.594 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.392 0.608 39 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.545 8.271 -22.547 24.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.082 3.918 3 C -0.210 4.210 4 C -0.152 4.152 5 C -0.159 4.159 6 C -0.036 4.036 7 N -0.367 5.367 8 C 0.421 3.579 9 O -0.502 6.502 10 N -0.388 5.388 11 C 0.011 3.989 12 C 0.233 3.767 13 O -0.500 6.500 14 N -0.217 5.217 15 C -0.461 4.461 16 H 0.082 0.918 17 C -0.207 4.207 18 N -0.565 5.565 19 Si 0.778 3.222 20 H -0.180 1.180 21 H -0.197 1.197 22 H -0.157 1.157 23 H 0.058 0.942 24 H 0.105 0.895 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.105 0.895 28 H 0.059 0.941 29 H 0.109 0.891 30 H 0.122 0.878 31 H 0.095 0.905 32 H 0.126 0.874 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.244 0.756 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.228 0.772 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.564 8.303 -22.358 24.490 hybrid contribution 0.018 -0.045 1.274 1.275 sum -5.547 8.259 -21.084 23.313 Atomic orbital electron populations 1.22123 0.94496 1.01909 1.02513 1.21132 0.94058 0.92542 0.84082 1.22120 1.00843 0.95497 1.02559 1.22766 0.97767 0.99700 0.94932 1.22744 0.97944 1.01983 0.93252 1.22538 0.95026 0.88423 0.97632 1.47798 1.55722 1.30278 1.02923 1.15462 0.79892 0.82331 0.80178 1.90839 1.46330 1.29622 1.83368 1.44810 1.57595 1.32185 1.04220 1.20671 1.01283 0.97086 0.79870 1.20466 0.85011 0.88041 0.83157 1.90513 1.47468 1.36176 1.75883 1.41912 1.48000 1.26551 1.05199 1.19035 1.30962 1.07668 0.88450 0.91825 1.26051 0.98062 1.01054 0.95490 1.69778 1.43732 1.38016 1.04941 0.85451 0.79007 0.78453 0.79258 1.18045 1.19702 1.15729 0.94162 0.89509 0.92686 0.92748 0.89531 0.94054 0.89114 0.87810 0.90493 0.87388 0.91477 0.90772 0.75580 0.88273 0.88177 0.77224 0.90874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 8.42 71.98 0.61 -2.47 16 2 C 0.17 3.27 0.83 3.95 0.00 3.27 16 3 C -0.15 -3.08 8.37 71.98 0.60 -2.48 16 4 C -0.11 -1.32 6.02 31.78 0.19 -1.13 16 5 C -0.12 -1.48 7.08 31.98 0.23 -1.25 16 6 C 0.09 1.66 6.57 86.86 0.57 2.23 16 7 N -0.63 -15.80 2.82 -782.96 -2.21 -18.01 16 8 C 0.72 23.56 8.06 179.06 1.44 25.01 16 9 O -0.62 -23.41 13.95 -3.97 -0.06 -23.47 16 10 N -0.73 -24.69 5.49 -482.30 -2.65 -27.33 16 11 C 0.14 4.88 6.15 85.63 0.53 5.41 16 12 C 0.45 20.03 7.85 87.66 0.69 20.72 16 13 O -0.61 -32.35 15.24 -3.04 -0.05 -32.40 16 14 N -0.58 -27.05 5.09 -307.00 -1.56 -28.61 16 15 C -0.33 -19.06 10.16 84.04 0.85 -18.20 16 16 H 0.06 4.30 7.39 -2.91 -0.02 4.28 16 17 C -0.01 -0.35 5.50 84.93 0.47 0.11 16 18 N -0.93 -54.57 13.96 21.66 0.30 -54.27 16 19 Si 0.96 38.50 27.74 68.60 1.90 40.40 16 20 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 21 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 22 H -0.23 -8.09 6.52 99.48 0.65 -7.44 16 23 H 0.04 1.08 6.88 -2.39 -0.02 1.07 16 24 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.04 1.12 6.74 -2.39 -0.02 1.11 16 29 H 0.09 0.86 7.85 -2.39 -0.02 0.84 16 30 H 0.10 0.82 7.83 -2.39 -0.02 0.80 16 31 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.07 1.41 7.30 -2.39 -0.02 1.39 16 34 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.41 13.87 5.92 -92.71 -0.55 13.32 16 36 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 37 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 38 H 0.39 15.50 5.76 -92.70 -0.53 14.97 16 39 H 0.28 15.16 8.31 -92.70 -0.77 14.39 16 Total: -1.00 -74.67 317.28 1.79 -72.87 By element: Atomic # 1 Polarization: 39.67 SS G_CDS: -0.07 Total: 39.60 kcal Atomic # 6 Polarization: 25.03 SS G_CDS: 6.18 Total: 31.21 kcal Atomic # 7 Polarization: -122.11 SS G_CDS: -6.11 Total: -128.22 kcal Atomic # 8 Polarization: -55.76 SS G_CDS: -0.10 Total: -55.86 kcal Atomic # 14 Polarization: 38.50 SS G_CDS: 1.90 Total: 40.40 kcal Total: -74.67 1.79 -72.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334339919.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.485 kcal (2) G-P(sol) polarization free energy of solvation -74.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds