Wall clock time and date at job start Mon Mar 30 2020 05:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21279 * 120.00278 * 2 1 4 4 N 1.34773 * 119.99874 * 179.97438 * 2 1 3 5 5 C 1.46967 * 120.59554 * 174.87272 * 4 2 1 6 6 C 1.53369 * 108.63680 * 124.79668 * 5 4 2 7 7 N 1.46972 * 108.63180 * 49.42463 * 6 5 4 8 8 C 1.34774 * 120.58970 * 124.75421 * 7 6 5 9 9 O 1.21594 * 120.00044 * 185.26215 * 8 7 6 10 10 N 1.34775 * 120.00297 * 5.26726 * 8 7 6 11 11 C 1.46502 * 120.00004 * 185.00788 * 10 8 7 12 12 C 1.50706 * 109.46982 * 179.97438 * 11 10 8 13 13 H 1.07999 * 120.00116 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99800 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00000 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 119.99901 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.47173 * 90.00686 * 16 14 12 18 18 H 1.48502 * 109.46823 * 210.00012 * 16 14 12 19 19 H 1.48495 * 109.47377 * 329.99906 * 16 14 12 20 20 C 1.46960 * 118.81413 * 304.77604 * 7 6 5 21 21 H 1.09002 * 109.74990 * 295.39218 * 20 7 6 22 22 C 1.53002 * 109.61113 * 174.97512 * 20 7 6 23 23 C 1.46964 * 120.59669 * 354.89911 * 4 2 1 24 24 H 1.08995 * 109.47097 * 272.79857 * 1 2 3 25 25 H 1.08997 * 109.46734 * 32.79941 * 1 2 3 26 26 H 1.09005 * 109.46884 * 152.79913 * 1 2 3 27 27 H 1.08999 * 109.60870 * 5.05686 * 5 4 2 28 28 H 1.09000 * 109.61133 * 244.54416 * 5 4 2 29 29 H 1.09001 * 109.60874 * 289.68571 * 6 5 4 30 30 H 1.08993 * 109.61287 * 169.17355 * 6 5 4 31 31 H 0.97000 * 120.00084 * 5.00128 * 10 8 7 32 32 H 1.08996 * 109.47152 * 299.99301 * 11 10 8 33 33 H 1.09003 * 109.47381 * 59.99912 * 11 10 8 34 34 H 0.96997 * 120.00020 * 179.97438 * 15 14 12 35 35 H 1.09009 * 109.46472 * 302.60919 * 22 20 7 36 36 H 1.08999 * 109.47197 * 62.60995 * 22 20 7 37 37 H 1.08994 * 109.47019 * 182.61558 * 22 20 7 38 38 H 1.08998 * 109.61487 * 115.45395 * 23 4 2 39 39 H 1.09001 * 109.60716 * 354.94655 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6461 -1.1851 -0.1125 6 6 4.2199 -1.9656 1.0765 7 7 3.5026 -3.2434 1.1895 8 6 4.1764 -4.4106 1.1891 9 8 3.5684 -5.4636 1.1867 10 7 5.5241 -4.4107 1.1916 11 6 6.2567 -5.6745 1.0804 12 6 7.7384 -5.4003 1.1069 13 1 8.0983 -4.3861 1.1979 14 6 8.6344 -6.4442 1.0150 15 7 9.9274 -6.2049 1.0386 16 14 8.0118 -8.1984 0.8583 17 1 7.8484 -8.5392 -0.5778 18 1 8.9894 -9.1278 1.4795 19 1 6.7030 -8.3227 1.5487 20 6 2.0374 -3.2255 1.3025 21 1 1.7457 -2.7402 2.2339 22 6 1.5033 -4.6591 1.2816 23 6 1.4637 -2.4449 0.1136 24 1 -0.3633 0.0502 1.0264 25 1 -0.3633 0.8638 -0.5567 26 1 -0.3633 -0.9141 -0.4698 27 1 4.0266 -0.1638 -0.0975 28 1 3.9353 -1.6722 -1.0438 29 1 4.0861 -1.3888 1.9916 30 1 5.2807 -2.1548 0.9122 31 1 6.0091 -3.5740 1.2669 32 1 5.9919 -6.3227 1.9158 33 1 5.9951 -6.1650 0.1428 34 1 10.5578 -6.9393 0.9743 35 1 1.8277 -5.1543 0.3663 36 1 1.8876 -5.2027 2.1447 37 1 0.4141 -4.6416 1.3187 38 1 1.5974 -3.0218 -0.8015 39 1 0.4029 -2.2557 0.2778 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336107012.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:40 Heat of formation + Delta-G solvation = -33.800356 kcal Electronic energy + Delta-G solvation = -21341.848096 eV Core-core repulsion = 18092.826901 eV Total energy + Delta-G solvation = -3249.021195 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.75356 -39.46501 -37.03659 -34.80294 -34.08779 -32.98973 -32.07933 -30.42642 -28.32339 -27.28853 -26.46497 -23.18797 -22.89050 -21.36529 -20.06352 -19.14338 -17.85774 -16.95476 -16.47993 -16.10337 -16.03743 -15.76614 -15.43331 -14.53130 -14.22546 -14.05993 -13.85539 -13.55635 -13.17305 -13.09958 -12.59523 -12.44300 -12.32929 -12.23102 -12.14443 -11.84406 -11.70767 -11.40602 -11.18538 -10.96501 -10.76278 -10.04559 -9.96334 -9.49627 -9.32420 -8.83701 -8.78366 -8.37441 -7.99369 -6.22104 -4.24317 2.38169 2.60298 3.07137 3.26195 3.33474 3.41439 3.67642 4.26231 4.32532 4.42145 4.64439 4.69355 4.82680 4.96397 5.02171 5.04527 5.13351 5.17749 5.19009 5.33566 5.51360 5.53123 5.63873 5.74663 5.82284 6.17858 6.23929 6.42548 6.69020 6.83413 7.09033 7.12426 7.23447 7.34082 7.47062 7.91749 8.22943 8.61972 8.77229 9.13897 9.38773 10.89874 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.033353 B = 0.004389 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.299275 B = 6377.755930 C = 7045.538072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.513 3.487 3 O -0.550 6.550 4 N -0.612 5.612 5 C 0.096 3.904 6 C 0.099 3.901 7 N -0.635 5.635 8 C 0.699 3.301 9 O -0.591 6.591 10 N -0.723 5.723 11 C 0.238 3.762 12 C -0.543 4.543 13 H 0.078 0.922 14 C 0.078 3.922 15 N -0.893 5.893 16 Si 0.878 3.122 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.260 1.260 20 C 0.150 3.850 21 H 0.069 0.931 22 C -0.132 4.132 23 C 0.093 3.907 24 H 0.094 0.906 25 H 0.093 0.907 26 H 0.082 0.918 27 H 0.103 0.897 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.096 0.904 31 H 0.390 0.610 32 H 0.024 0.976 33 H 0.017 0.983 34 H 0.268 0.732 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.038 0.962 38 H 0.077 0.923 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.016 9.331 -1.415 21.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.302 3.698 3 O -0.427 6.427 4 N -0.346 5.346 5 C -0.027 4.027 6 C -0.026 4.026 7 N -0.375 5.375 8 C 0.401 3.599 9 O -0.471 6.471 10 N -0.377 5.377 11 C 0.116 3.884 12 C -0.581 4.581 13 H 0.096 0.904 14 C -0.126 4.126 15 N -0.530 5.530 16 Si 0.704 3.296 17 H -0.199 1.199 18 H -0.209 1.209 19 H -0.184 1.184 20 C 0.045 3.955 21 H 0.087 0.913 22 C -0.189 4.189 23 C -0.031 4.031 24 H 0.112 0.888 25 H 0.111 0.889 26 H 0.101 0.899 27 H 0.122 0.878 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.114 0.886 31 H 0.226 0.774 32 H 0.042 0.958 33 H 0.035 0.965 34 H 0.077 0.923 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.056 0.944 38 H 0.095 0.905 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -18.902 8.992 -1.441 20.982 hybrid contribution 0.193 -0.513 -0.066 0.552 sum -18.709 8.479 -1.506 20.596 Atomic orbital electron populations 1.21964 0.91830 1.04816 1.04904 1.20840 0.90666 0.82967 0.75347 1.90712 1.70700 1.31030 1.50295 1.48131 1.07422 1.06226 1.72852 1.22032 0.79543 1.02512 0.98616 1.21983 0.97281 0.84939 0.98360 1.47270 1.06089 1.04796 1.79357 1.16077 0.82525 0.83199 0.78114 1.90912 1.66726 1.30606 1.58858 1.45693 1.03465 1.12031 1.76531 1.19358 0.91363 0.81267 0.96433 1.21085 0.88071 0.96117 1.52852 0.90382 1.24782 0.94615 0.99275 0.93923 1.69879 1.01124 1.32666 1.49314 0.86806 0.79464 0.84249 0.79095 1.19897 1.20948 1.18427 1.21374 0.79211 0.98153 0.96739 0.91295 1.22160 0.97337 0.93222 1.06229 1.22428 0.96804 0.84084 0.99798 0.88761 0.88869 0.89881 0.87833 0.90689 0.91123 0.88555 0.77406 0.95805 0.96469 0.92257 0.90341 0.90259 0.94358 0.90462 0.88489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.14 9.43 36.01 0.34 -0.80 16 2 C 0.51 5.63 7.80 -10.98 -0.09 5.55 16 3 O -0.55 -8.26 16.51 5.56 0.09 -8.17 16 4 N -0.61 -6.45 2.95 -172.49 -0.51 -6.96 16 5 C 0.10 1.08 6.60 -3.60 -0.02 1.06 16 6 C 0.10 1.18 6.52 -3.59 -0.02 1.16 16 7 N -0.64 -9.04 2.95 -170.63 -0.50 -9.55 16 8 C 0.70 13.10 8.21 -86.92 -0.71 12.38 16 9 O -0.59 -12.59 11.73 5.28 0.06 -12.53 16 10 N -0.72 -14.54 5.42 -66.41 -0.36 -14.90 16 11 C 0.24 5.79 4.50 -5.19 -0.02 5.76 16 12 C -0.54 -14.75 9.83 -34.44 -0.34 -15.09 16 13 H 0.08 2.21 7.84 -52.49 -0.41 1.80 16 14 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 15 N -0.89 -26.34 13.96 55.43 0.77 -25.57 16 16 Si 0.88 21.24 27.47 -169.99 -4.67 16.57 16 17 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 20 C 0.15 1.74 3.65 -67.49 -0.25 1.49 16 21 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 22 C -0.13 -1.68 7.58 37.16 0.28 -1.40 16 23 C 0.09 0.84 5.65 -3.60 -0.02 0.82 16 24 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.08 0.38 6.25 -51.93 -0.32 0.06 16 27 H 0.10 1.20 6.99 -51.93 -0.36 0.83 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.10 1.15 5.70 -51.93 -0.30 0.85 16 31 H 0.39 7.04 5.89 -40.82 -0.24 6.80 16 32 H 0.02 0.62 7.20 -51.93 -0.37 0.24 16 33 H 0.02 0.44 7.57 -51.93 -0.39 0.04 16 34 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.08 1.18 6.73 -51.92 -0.35 0.83 16 36 H 0.08 1.24 6.75 -51.93 -0.35 0.88 16 37 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.08 0.74 8.12 -51.93 -0.42 0.32 16 39 H 0.10 0.58 5.60 -51.93 -0.29 0.29 16 LS Contribution 308.77 15.07 4.65 4.65 Total: -1.00 -33.57 308.77 -6.93 -40.50 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -5.52 Total: 2.94 kcal Atomic # 6 Polarization: 13.96 SS G_CDS: -0.95 Total: 13.01 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: -0.60 Total: -56.97 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: 0.15 Total: -20.70 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.57 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.57 -6.93 -40.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336107012.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.695 kcal (2) G-P(sol) polarization free energy of solvation -33.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds