Wall clock time and date at job start Mon Mar 30 2020 05:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21279 * 120.00278 * 2 1 4 4 N 1.34773 * 119.99874 * 179.97438 * 2 1 3 5 5 C 1.46967 * 120.59554 * 174.87272 * 4 2 1 6 6 C 1.53369 * 108.63680 * 124.79668 * 5 4 2 7 7 N 1.46972 * 108.63180 * 49.42463 * 6 5 4 8 8 C 1.34774 * 120.58970 * 124.75421 * 7 6 5 9 9 O 1.21594 * 120.00044 * 185.26215 * 8 7 6 10 10 N 1.34775 * 120.00297 * 5.26726 * 8 7 6 11 11 C 1.46502 * 120.00004 * 185.00788 * 10 8 7 12 12 C 1.50706 * 109.46982 * 179.97438 * 11 10 8 13 13 H 1.07999 * 120.00116 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99800 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00000 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 119.99901 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.47173 * 90.00686 * 16 14 12 18 18 H 1.48502 * 109.46823 * 210.00012 * 16 14 12 19 19 H 1.48495 * 109.47377 * 329.99906 * 16 14 12 20 20 C 1.46960 * 118.81413 * 304.77604 * 7 6 5 21 21 H 1.09002 * 109.74990 * 295.39218 * 20 7 6 22 22 C 1.53002 * 109.61113 * 174.97512 * 20 7 6 23 23 C 1.46964 * 120.59669 * 354.89911 * 4 2 1 24 24 H 1.08995 * 109.47097 * 272.79857 * 1 2 3 25 25 H 1.08997 * 109.46734 * 32.79941 * 1 2 3 26 26 H 1.09005 * 109.46884 * 152.79913 * 1 2 3 27 27 H 1.08999 * 109.60870 * 5.05686 * 5 4 2 28 28 H 1.09000 * 109.61133 * 244.54416 * 5 4 2 29 29 H 1.09001 * 109.60874 * 289.68571 * 6 5 4 30 30 H 1.08993 * 109.61287 * 169.17355 * 6 5 4 31 31 H 0.97000 * 120.00084 * 5.00128 * 10 8 7 32 32 H 1.08996 * 109.47152 * 299.99301 * 11 10 8 33 33 H 1.09003 * 109.47381 * 59.99912 * 11 10 8 34 34 H 0.96997 * 120.00020 * 179.97438 * 15 14 12 35 35 H 1.09009 * 109.46472 * 302.60919 * 22 20 7 36 36 H 1.08999 * 109.47197 * 62.60995 * 22 20 7 37 37 H 1.08994 * 109.47019 * 182.61558 * 22 20 7 38 38 H 1.08998 * 109.61487 * 115.45395 * 23 4 2 39 39 H 1.09001 * 109.60716 * 354.94655 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6461 -1.1851 -0.1125 6 6 4.2199 -1.9656 1.0765 7 7 3.5026 -3.2434 1.1895 8 6 4.1764 -4.4106 1.1891 9 8 3.5684 -5.4636 1.1867 10 7 5.5241 -4.4107 1.1916 11 6 6.2567 -5.6745 1.0804 12 6 7.7384 -5.4003 1.1069 13 1 8.0983 -4.3861 1.1979 14 6 8.6344 -6.4442 1.0150 15 7 9.9274 -6.2049 1.0386 16 14 8.0118 -8.1984 0.8583 17 1 7.8484 -8.5392 -0.5778 18 1 8.9894 -9.1278 1.4795 19 1 6.7030 -8.3227 1.5487 20 6 2.0374 -3.2255 1.3025 21 1 1.7457 -2.7402 2.2339 22 6 1.5033 -4.6591 1.2816 23 6 1.4637 -2.4449 0.1136 24 1 -0.3633 0.0502 1.0264 25 1 -0.3633 0.8638 -0.5567 26 1 -0.3633 -0.9141 -0.4698 27 1 4.0266 -0.1638 -0.0975 28 1 3.9353 -1.6722 -1.0438 29 1 4.0861 -1.3888 1.9916 30 1 5.2807 -2.1548 0.9122 31 1 6.0091 -3.5740 1.2669 32 1 5.9919 -6.3227 1.9158 33 1 5.9951 -6.1650 0.1428 34 1 10.5578 -6.9393 0.9743 35 1 1.8277 -5.1543 0.3663 36 1 1.8876 -5.2027 2.1447 37 1 0.4141 -4.6416 1.3187 38 1 1.5974 -3.0218 -0.8015 39 1 0.4029 -2.2557 0.2778 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336107012.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:40 Heat of formation + Delta-G solvation = -58.453536 kcal Electronic energy + Delta-G solvation = -21342.917138 eV Core-core repulsion = 18092.826901 eV Total energy + Delta-G solvation = -3250.090237 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.86672 -40.59024 -38.19004 -36.42475 -35.23079 -34.61993 -33.52609 -31.33043 -29.73475 -28.63496 -27.37344 -24.54695 -24.13588 -22.79300 -21.33332 -20.33091 -19.12893 -18.37576 -17.74493 -17.43511 -17.07159 -16.81796 -16.47415 -16.25870 -15.75458 -15.23946 -14.88360 -14.79227 -14.59743 -14.30677 -13.91094 -13.87058 -13.47509 -13.24984 -13.01184 -12.97002 -12.76028 -12.65535 -12.56861 -12.36873 -12.15988 -11.90577 -11.63329 -10.93446 -10.90507 -10.41398 -10.20423 -9.87276 -9.26146 -8.38920 -6.46010 1.34485 1.36245 1.49585 1.56189 1.57673 2.06773 2.19831 2.29627 2.96905 3.03545 3.56654 3.73638 3.82359 4.05746 4.09052 4.18898 4.29715 4.41814 4.49785 4.61928 4.66455 4.72767 4.75586 4.83076 4.91496 5.07513 5.11132 5.18760 5.23888 5.33405 5.40487 5.56846 5.78087 5.90367 6.18655 6.36330 6.55805 7.08365 7.10247 7.19883 7.66859 8.75931 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.033353 B = 0.004389 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.299275 B = 6377.755930 C = 7045.538072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.507 3.493 3 O -0.597 6.597 4 N -0.613 5.613 5 C 0.100 3.900 6 C 0.100 3.900 7 N -0.628 5.628 8 C 0.697 3.303 9 O -0.619 6.619 10 N -0.727 5.727 11 C 0.254 3.746 12 C -0.546 4.546 13 H 0.055 0.945 14 C 0.026 3.974 15 N -0.932 5.932 16 Si 0.940 3.060 17 H -0.264 1.264 18 H -0.275 1.275 19 H -0.259 1.259 20 C 0.143 3.857 21 H 0.087 0.913 22 C -0.123 4.123 23 C 0.100 3.900 24 H 0.114 0.886 25 H 0.096 0.904 26 H 0.109 0.891 27 H 0.099 0.901 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.399 0.601 32 H 0.010 0.990 33 H 0.010 0.990 34 H 0.272 0.728 35 H 0.051 0.949 36 H 0.045 0.955 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.800 9.423 -1.551 23.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.299 3.701 3 O -0.479 6.479 4 N -0.345 5.345 5 C -0.024 4.024 6 C -0.024 4.024 7 N -0.367 5.367 8 C 0.399 3.601 9 O -0.500 6.500 10 N -0.383 5.383 11 C 0.130 3.870 12 C -0.584 4.584 13 H 0.074 0.926 14 C -0.174 4.174 15 N -0.571 5.571 16 Si 0.764 3.236 17 H -0.189 1.189 18 H -0.200 1.200 19 H -0.183 1.183 20 C 0.040 3.960 21 H 0.105 0.895 22 C -0.180 4.180 23 C -0.023 4.023 24 H 0.132 0.868 25 H 0.114 0.886 26 H 0.127 0.873 27 H 0.117 0.883 28 H 0.090 0.910 29 H 0.100 0.900 30 H 0.110 0.890 31 H 0.236 0.764 32 H 0.028 0.972 33 H 0.028 0.972 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -21.732 9.120 -1.578 23.620 hybrid contribution 1.029 -0.445 -0.002 1.121 sum -20.703 8.675 -1.580 22.503 Atomic orbital electron populations 1.22014 0.87891 1.06344 1.06521 1.21703 0.92478 0.82046 0.73886 1.90696 1.72031 1.32660 1.52465 1.48234 1.06989 1.06931 1.72389 1.21894 0.80657 1.01912 0.97959 1.22073 0.97006 0.83971 0.99316 1.47329 1.07410 1.04006 1.77930 1.16195 0.81883 0.84169 0.77882 1.90916 1.67066 1.32147 1.59918 1.45469 1.04319 1.11058 1.77466 1.18912 0.89935 0.82817 0.95368 1.21285 0.89733 0.95243 1.52183 0.92642 1.25603 0.94708 1.03472 0.93625 1.69986 1.02367 1.34151 1.50628 0.85818 0.78950 0.79365 0.79508 1.18917 1.19984 1.18277 1.21685 0.77275 0.98174 0.98911 0.89527 1.21947 0.99742 0.93097 1.03228 1.22496 0.98654 0.82835 0.98343 0.86789 0.88560 0.87293 0.88276 0.90987 0.89995 0.88977 0.76417 0.97160 0.97170 0.91869 0.93025 0.93571 0.90303 0.90741 0.84247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 9.43 71.24 0.67 -0.83 16 2 C 0.51 9.87 7.80 87.66 0.68 10.56 16 3 O -0.60 -17.33 16.51 -3.02 -0.05 -17.38 16 4 N -0.61 -11.36 2.95 -818.03 -2.41 -13.77 16 5 C 0.10 2.14 6.60 86.41 0.57 2.71 16 6 C 0.10 2.30 6.52 86.41 0.56 2.86 16 7 N -0.63 -17.16 2.95 -812.02 -2.39 -19.55 16 8 C 0.70 25.99 8.21 179.06 1.47 27.46 16 9 O -0.62 -26.44 11.73 -4.01 -0.05 -26.48 16 10 N -0.73 -29.54 5.42 -482.28 -2.61 -32.16 16 11 C 0.25 12.45 4.50 85.63 0.39 12.83 16 12 C -0.55 -30.24 9.83 25.60 0.25 -29.99 16 13 H 0.06 3.24 7.84 -2.91 -0.02 3.22 16 14 C 0.03 1.47 5.47 84.66 0.46 1.94 16 15 N -0.93 -55.79 13.96 21.45 0.30 -55.49 16 16 Si 0.94 43.90 27.47 68.60 1.88 45.78 16 17 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 18 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 19 H -0.26 -11.94 6.54 99.48 0.65 -11.29 16 20 C 0.14 2.94 3.65 45.03 0.16 3.10 16 21 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 22 C -0.12 -2.88 7.58 71.98 0.55 -2.33 16 23 C 0.10 1.44 5.65 86.41 0.49 1.93 16 24 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.11 0.40 6.25 -2.38 -0.01 0.39 16 27 H 0.10 2.26 6.99 -2.39 -0.02 2.24 16 28 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.09 2.18 5.70 -2.39 -0.01 2.17 16 31 H 0.40 14.61 5.89 -92.71 -0.55 14.06 16 32 H 0.01 0.54 7.20 -2.39 -0.02 0.52 16 33 H 0.01 0.52 7.57 -2.39 -0.02 0.50 16 34 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 35 H 0.05 1.50 6.73 -2.38 -0.02 1.48 16 36 H 0.05 1.40 6.75 -2.39 -0.02 1.38 16 37 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.07 1.19 8.12 -2.39 -0.02 1.17 16 39 H 0.14 0.87 5.60 -2.39 -0.01 0.86 16 Total: -1.00 -74.46 308.77 1.39 -73.07 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 0.46 Total: 15.73 kcal Atomic # 6 Polarization: 23.99 SS G_CDS: 6.26 Total: 30.25 kcal Atomic # 7 Polarization: -113.85 SS G_CDS: -7.12 Total: -120.97 kcal Atomic # 8 Polarization: -43.76 SS G_CDS: -0.10 Total: -43.86 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 1.88 Total: 45.78 kcal Total: -74.46 1.39 -73.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336107012.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.615 kcal (2) G-P(sol) polarization free energy of solvation -74.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds