Wall clock time and date at job start Mon Mar 30 2020 05:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46959 * 2 1 4 4 C 1.52999 * 109.47351 * 239.99986 * 2 1 3 5 5 N 1.46505 * 109.47017 * 119.99798 * 2 1 3 6 6 N 1.40168 * 126.35002 * 359.97438 * 5 2 1 7 7 C 1.29403 * 108.14037 * 180.02562 * 6 5 2 8 8 N 1.37361 * 108.82559 * 359.97438 * 7 6 5 9 9 C 1.46505 * 125.82810 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47212 * 90.02600 * 9 8 7 11 11 O 1.42904 * 109.47396 * 64.99584 * 10 9 8 12 12 C 1.42896 * 114.00313 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.46851 * 180.02562 * 12 11 10 14 14 H 1.07999 * 120.00616 * 359.97438 * 13 12 11 15 15 C 1.37884 * 119.99887 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99815 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00265 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47002 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47253 * 119.99229 * 17 15 13 20 20 H 1.48498 * 109.46902 * 239.99613 * 17 15 13 21 21 C 1.34810 * 108.33629 * 0.24535 * 8 7 6 22 22 O 1.21823 * 126.29785 * 179.75653 * 21 8 7 23 23 H 1.08991 * 109.47253 * 299.99800 * 1 2 3 24 24 H 1.08998 * 109.47028 * 60.00451 * 1 2 3 25 25 H 1.09005 * 109.46934 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47376 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.47282 * 300.00302 * 3 2 1 28 28 H 1.09005 * 109.47112 * 59.99848 * 3 2 1 29 29 H 1.08997 * 109.47295 * 299.99699 * 4 2 1 30 30 H 1.08991 * 109.47059 * 59.99895 * 4 2 1 31 31 H 1.09001 * 109.46783 * 180.02562 * 4 2 1 32 32 H 1.08000 * 125.58753 * 180.02562 * 7 6 5 33 33 H 1.09002 * 109.47068 * 210.02661 * 9 8 7 34 34 H 1.09001 * 109.47372 * 330.02748 * 9 8 7 35 35 H 1.09001 * 109.47630 * 184.99905 * 10 9 8 36 36 H 1.09004 * 109.47346 * 305.00035 * 10 9 8 37 37 H 1.08999 * 109.46799 * 300.00326 * 12 11 10 38 38 H 1.08998 * 109.47187 * 59.99969 * 12 11 10 39 39 H 0.97003 * 120.00101 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 2.0183 -0.6906 1.1962 6 7 1.2309 -1.2699 2.2007 7 6 2.0218 -1.7816 3.0879 8 7 3.3217 -1.5604 2.7030 9 6 4.5172 -1.9833 3.4368 10 6 4.9333 -3.3803 2.9720 11 8 5.3307 -3.3273 1.6004 12 6 5.7400 -4.5872 1.0647 13 6 6.1358 -4.4144 -0.3791 14 1 6.0798 -3.4400 -0.8416 15 6 6.5683 -5.5006 -1.1102 16 7 6.6359 -6.6872 -0.5473 17 14 7.0581 -5.2866 -2.9000 18 1 6.8922 -3.8639 -3.2920 19 1 8.4773 -5.6867 -3.0761 20 1 6.1937 -6.1392 -3.7551 21 6 3.3096 -0.8825 1.5379 22 8 4.2848 -0.5133 0.9081 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9563 -0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.6768 -1.7489 -1.2492 30 1 1.6768 -0.2075 -2.1391 31 1 3.1301 -0.7216 -1.2489 32 1 1.7109 -2.2987 3.9836 33 1 5.3281 -1.2804 3.2462 34 1 4.2992 -2.0057 4.5046 35 1 5.7679 -3.7316 3.5787 36 1 4.0920 -4.0649 3.0803 37 1 6.5912 -4.9638 1.6318 38 1 4.9152 -5.2965 1.1333 39 1 6.9405 -7.4513 -1.0614 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338563554.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:19 Heat of formation + Delta-G solvation = -7.742228 kcal Electronic energy + Delta-G solvation = -21519.683383 eV Core-core repulsion = 18271.792153 eV Total energy + Delta-G solvation = -3247.891230 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.09641 -37.49691 -36.82987 -36.44181 -33.77111 -32.57422 -29.83684 -29.18850 -27.38243 -27.23561 -26.86309 -23.40890 -22.96412 -22.26729 -20.74357 -19.69669 -17.08473 -16.54215 -16.15823 -15.76295 -15.60843 -15.18055 -14.77462 -14.50667 -14.19115 -14.09765 -13.64448 -13.41499 -12.54441 -12.46794 -12.29019 -12.19555 -12.07048 -12.05530 -11.68766 -11.60218 -11.25011 -11.19048 -11.04470 -10.84840 -10.79790 -10.73391 -10.10895 -9.64333 -9.59573 -9.07055 -8.84472 -8.18337 -8.13176 -6.08911 -4.09264 2.05753 2.20893 3.21164 3.31202 3.37401 3.39573 3.46266 4.34489 4.50444 4.70387 4.84438 4.89052 5.01304 5.12339 5.27872 5.33082 5.45697 5.54535 5.62951 5.68034 5.72102 5.73270 5.85748 5.88935 5.95881 6.01841 6.08787 6.25466 6.33746 6.49526 6.62124 6.91521 7.05745 7.40877 7.84077 7.99271 8.16438 8.56049 8.57449 9.05466 9.55445 11.02847 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.018216 B = 0.005819 C = 0.004837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.724455 B = 4810.777585 C = 5787.131430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.212 3.788 3 C -0.162 4.162 4 C -0.166 4.166 5 N -0.450 5.450 6 N -0.291 5.291 7 C 0.248 3.752 8 N -0.551 5.551 9 C 0.134 3.866 10 C 0.041 3.959 11 O -0.381 6.381 12 C 0.196 3.804 13 C -0.509 4.509 14 H 0.067 0.933 15 C 0.056 3.944 16 N -0.901 5.901 17 Si 0.906 3.094 18 H -0.270 1.270 19 H -0.282 1.282 20 H -0.283 1.283 21 C 0.653 3.347 22 O -0.532 6.532 23 H 0.064 0.936 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.223 0.777 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.055 0.945 36 H 0.041 0.959 37 H 0.005 0.995 38 H 0.002 0.998 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.156 11.949 8.175 18.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.130 3.870 3 C -0.220 4.220 4 C -0.224 4.224 5 N -0.274 5.274 6 N -0.112 5.112 7 C -0.052 4.052 8 N -0.280 5.280 9 C 0.012 3.988 10 C -0.038 4.038 11 O -0.301 6.301 12 C 0.122 3.878 13 C -0.547 4.547 14 H 0.086 0.914 15 C -0.145 4.145 16 N -0.541 5.541 17 Si 0.733 3.267 18 H -0.194 1.194 19 H -0.208 1.208 20 H -0.209 1.209 21 C 0.353 3.647 22 O -0.403 6.403 23 H 0.083 0.917 24 H 0.088 0.912 25 H 0.085 0.915 26 H 0.093 0.907 27 H 0.092 0.908 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.240 0.760 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.023 0.977 38 H 0.020 0.980 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.363 12.407 7.206 18.939 hybrid contribution 1.028 -0.760 -0.370 1.331 sum -11.334 11.646 6.837 17.631 Atomic orbital electron populations 1.21886 0.92224 1.03289 1.02302 1.20372 0.94902 0.90987 0.80742 1.22237 1.03402 0.94123 1.02242 1.22259 1.03906 1.00754 0.95460 1.49190 1.03848 1.53549 1.20802 1.76783 1.20078 1.15782 0.98584 1.25759 0.80689 0.98784 0.99923 1.45996 1.07307 1.51845 1.22832 1.21767 0.85310 0.97332 0.94423 1.22687 0.98513 0.94671 0.87933 1.88028 1.85792 1.34923 1.21327 1.20194 0.93427 0.79964 0.94196 1.21104 1.43238 0.95561 0.94778 0.91429 1.24935 0.95644 0.94799 0.99131 1.69972 1.47708 0.99491 1.36898 0.86305 0.78071 0.78491 0.83855 1.19386 1.20786 1.20866 1.16660 0.84422 0.81613 0.81992 1.91085 1.35845 1.57151 1.56205 0.91706 0.91219 0.91462 0.90716 0.90765 0.92428 0.91898 0.90922 0.90319 0.76048 0.88283 0.88172 0.92665 0.94106 0.97729 0.98029 0.92788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 8.00 37.16 0.30 -1.24 16 2 C 0.21 2.97 1.15 -131.82 -0.15 2.82 16 3 C -0.16 -2.02 8.51 37.16 0.32 -1.71 16 4 C -0.17 -2.50 8.52 37.16 0.32 -2.18 16 5 N -0.45 -7.38 3.47 -52.31 -0.18 -7.57 16 6 N -0.29 -4.15 11.62 29.87 0.35 -3.80 16 7 C 0.25 2.98 12.66 -89.12 -1.13 1.86 16 8 N -0.55 -8.51 2.70 -122.65 -0.33 -8.84 16 9 C 0.13 1.82 6.41 -4.04 -0.03 1.79 16 10 C 0.04 0.71 6.28 37.16 0.23 0.95 16 11 O -0.38 -9.50 10.08 -35.23 -0.36 -9.86 16 12 C 0.20 5.54 5.69 36.00 0.20 5.75 16 13 C -0.51 -15.66 9.43 -34.44 -0.32 -15.99 16 14 H 0.07 2.14 7.81 -52.49 -0.41 1.73 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 16 N -0.90 -27.54 13.29 55.43 0.74 -26.81 16 17 Si 0.91 22.74 29.54 -169.99 -5.02 17.72 16 18 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 21 C 0.65 12.47 7.79 -86.74 -0.68 11.79 16 22 O -0.53 -12.20 15.66 5.08 0.08 -12.12 16 23 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.07 1.13 7.05 -51.93 -0.37 0.76 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.08 1.45 7.08 -51.93 -0.37 1.09 16 32 H 0.22 1.40 8.06 -52.49 -0.42 0.97 16 33 H 0.10 1.48 8.07 -51.93 -0.42 1.06 16 34 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.00 0.14 8.14 -51.93 -0.42 -0.28 16 38 H 0.00 0.06 8.14 -51.93 -0.42 -0.37 16 39 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 331.65 15.07 5.00 5.00 Total: -1.00 -37.63 331.65 -6.96 -44.59 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: -6.19 Total: -3.71 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: -1.04 Total: 5.40 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: 0.57 Total: -47.01 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -0.28 Total: -21.98 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -37.63 -6.96 -44.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338563554.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.849 kcal (2) G-P(sol) polarization free energy of solvation -37.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds