Wall clock time and date at job start Mon Mar 30 2020 05:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46959 * 2 1 4 4 C 1.52999 * 109.47351 * 239.99986 * 2 1 3 5 5 N 1.46505 * 109.47017 * 119.99798 * 2 1 3 6 6 N 1.40168 * 126.35002 * 359.97438 * 5 2 1 7 7 C 1.29403 * 108.14037 * 180.02562 * 6 5 2 8 8 N 1.37361 * 108.82559 * 359.97438 * 7 6 5 9 9 C 1.46505 * 125.82810 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47212 * 90.02600 * 9 8 7 11 11 O 1.42904 * 109.47396 * 64.99584 * 10 9 8 12 12 C 1.42896 * 114.00313 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.46851 * 180.02562 * 12 11 10 14 14 H 1.07999 * 120.00616 * 359.97438 * 13 12 11 15 15 C 1.37884 * 119.99887 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99815 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00265 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47002 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47253 * 119.99229 * 17 15 13 20 20 H 1.48498 * 109.46902 * 239.99613 * 17 15 13 21 21 C 1.34810 * 108.33629 * 0.24535 * 8 7 6 22 22 O 1.21823 * 126.29785 * 179.75653 * 21 8 7 23 23 H 1.08991 * 109.47253 * 299.99800 * 1 2 3 24 24 H 1.08998 * 109.47028 * 60.00451 * 1 2 3 25 25 H 1.09005 * 109.46934 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47376 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.47282 * 300.00302 * 3 2 1 28 28 H 1.09005 * 109.47112 * 59.99848 * 3 2 1 29 29 H 1.08997 * 109.47295 * 299.99699 * 4 2 1 30 30 H 1.08991 * 109.47059 * 59.99895 * 4 2 1 31 31 H 1.09001 * 109.46783 * 180.02562 * 4 2 1 32 32 H 1.08000 * 125.58753 * 180.02562 * 7 6 5 33 33 H 1.09002 * 109.47068 * 210.02661 * 9 8 7 34 34 H 1.09001 * 109.47372 * 330.02748 * 9 8 7 35 35 H 1.09001 * 109.47630 * 184.99905 * 10 9 8 36 36 H 1.09004 * 109.47346 * 305.00035 * 10 9 8 37 37 H 1.08999 * 109.46799 * 300.00326 * 12 11 10 38 38 H 1.08998 * 109.47187 * 59.99969 * 12 11 10 39 39 H 0.97003 * 120.00101 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 2.0183 -0.6906 1.1962 6 7 1.2309 -1.2699 2.2007 7 6 2.0218 -1.7816 3.0879 8 7 3.3217 -1.5604 2.7030 9 6 4.5172 -1.9833 3.4368 10 6 4.9333 -3.3803 2.9720 11 8 5.3307 -3.3273 1.6004 12 6 5.7400 -4.5872 1.0647 13 6 6.1358 -4.4144 -0.3791 14 1 6.0798 -3.4400 -0.8416 15 6 6.5683 -5.5006 -1.1102 16 7 6.6359 -6.6872 -0.5473 17 14 7.0581 -5.2866 -2.9000 18 1 6.8922 -3.8639 -3.2920 19 1 8.4773 -5.6867 -3.0761 20 1 6.1937 -6.1392 -3.7551 21 6 3.3096 -0.8825 1.5379 22 8 4.2848 -0.5133 0.9081 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9563 -0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.6768 -1.7489 -1.2492 30 1 1.6768 -0.2075 -2.1391 31 1 3.1301 -0.7216 -1.2489 32 1 1.7109 -2.2987 3.9836 33 1 5.3281 -1.2804 3.2462 34 1 4.2992 -2.0057 4.5046 35 1 5.7679 -3.7316 3.5787 36 1 4.0920 -4.0649 3.0803 37 1 6.5912 -4.9638 1.6318 38 1 4.9152 -5.2965 1.1333 39 1 6.9405 -7.4513 -1.0614 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338563554.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:18 Heat of formation + Delta-G solvation = -33.452738 kcal Electronic energy + Delta-G solvation = -21520.798274 eV Core-core repulsion = 18271.792153 eV Total energy + Delta-G solvation = -3249.006121 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.29725 -38.91250 -38.30204 -37.90712 -35.30599 -34.59890 -31.05841 -30.64826 -28.97669 -28.38153 -28.29342 -24.88766 -24.34945 -24.10387 -21.95391 -20.86806 -18.75557 -18.25660 -17.53081 -17.46288 -17.01050 -16.53012 -16.32541 -16.16842 -15.71686 -15.40624 -15.01900 -14.78071 -14.14459 -13.78512 -13.50474 -13.46221 -13.28131 -13.27064 -13.12035 -12.85295 -12.82422 -12.72259 -12.63579 -12.40469 -12.28905 -12.17786 -12.07743 -11.33182 -11.00685 -10.93835 -10.84144 -10.27283 -9.42300 -8.39152 -6.50320 0.89513 1.20293 1.31512 1.32904 1.48277 1.83047 2.28882 2.36359 2.93800 3.14838 3.48857 3.82810 3.93293 3.98071 4.01384 4.12734 4.29239 4.38316 4.50567 4.57784 4.59992 4.70285 4.71905 4.73964 4.78686 4.83494 4.88186 5.06021 5.09986 5.13436 5.23591 5.36328 5.45122 5.48450 5.88013 5.91605 6.48729 6.78767 6.83097 7.21390 7.21809 8.73108 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.018216 B = 0.005819 C = 0.004837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.724455 B = 4810.777585 C = 5787.131430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.198 3.802 3 C -0.153 4.153 4 C -0.160 4.160 5 N -0.454 5.454 6 N -0.307 5.307 7 C 0.264 3.736 8 N -0.556 5.556 9 C 0.139 3.861 10 C 0.026 3.974 11 O -0.409 6.409 12 C 0.215 3.785 13 C -0.548 4.548 14 H 0.044 0.956 15 C 0.012 3.988 16 N -0.925 5.925 17 Si 0.975 3.025 18 H -0.275 1.275 19 H -0.264 1.264 20 H -0.266 1.266 21 C 0.630 3.370 22 O -0.588 6.588 23 H 0.070 0.930 24 H 0.098 0.902 25 H 0.056 0.944 26 H 0.039 0.961 27 H 0.104 0.896 28 H 0.065 0.935 29 H 0.045 0.955 30 H 0.107 0.893 31 H 0.033 0.967 32 H 0.284 0.716 33 H 0.080 0.920 34 H 0.172 0.828 35 H 0.074 0.926 36 H 0.053 0.947 37 H -0.008 1.008 38 H -0.017 1.017 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.764 12.104 8.966 20.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.116 3.884 3 C -0.211 4.211 4 C -0.218 4.218 5 N -0.276 5.276 6 N -0.128 5.128 7 C -0.033 4.033 8 N -0.283 5.283 9 C 0.018 3.982 10 C -0.051 4.051 11 O -0.329 6.329 12 C 0.140 3.860 13 C -0.586 4.586 14 H 0.062 0.938 15 C -0.187 4.187 16 N -0.565 5.565 17 Si 0.798 3.202 18 H -0.200 1.200 19 H -0.188 1.188 20 H -0.191 1.191 21 C 0.329 3.671 22 O -0.464 6.464 23 H 0.089 0.911 24 H 0.117 0.883 25 H 0.075 0.925 26 H 0.058 0.942 27 H 0.123 0.877 28 H 0.084 0.916 29 H 0.064 0.936 30 H 0.125 0.875 31 H 0.052 0.948 32 H 0.300 0.700 33 H 0.098 0.902 34 H 0.189 0.811 35 H 0.092 0.908 36 H 0.071 0.929 37 H 0.009 0.991 38 H 0.001 0.999 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.017 12.547 8.044 20.460 hybrid contribution 1.491 -0.836 -0.500 1.781 sum -12.526 11.711 7.544 18.734 Atomic orbital electron populations 1.21825 0.89412 1.03159 1.04033 1.20719 0.96933 0.91219 0.79496 1.22170 1.01107 0.93677 1.04141 1.22222 1.00917 1.00585 0.98121 1.49469 1.03267 1.53293 1.21605 1.76798 1.20176 1.17017 0.98830 1.27019 0.78676 0.96959 1.00650 1.46177 1.09137 1.51077 1.21953 1.22001 0.84562 0.94019 0.97577 1.23174 0.99651 0.97885 0.84434 1.87992 1.86045 1.33081 1.25759 1.19738 0.92029 0.80979 0.93290 1.21329 1.45417 0.95140 0.96670 0.93757 1.25851 0.94740 0.94155 1.03940 1.70041 1.47319 1.00206 1.38893 0.85257 0.78766 0.78300 0.77849 1.19951 1.18839 1.19082 1.17140 0.84756 0.82229 0.82949 1.91025 1.37774 1.59471 1.58102 0.91074 0.88308 0.92458 0.94169 0.87708 0.91588 0.93600 0.87487 0.94766 0.70037 0.90181 0.81093 0.90805 0.92883 0.99073 0.99902 0.91867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 8.00 71.98 0.58 -1.99 16 2 C 0.20 5.53 1.15 3.60 0.00 5.53 16 3 C -0.15 -3.80 8.51 71.98 0.61 -3.19 16 4 C -0.16 -5.02 8.52 71.98 0.61 -4.41 16 5 N -0.45 -14.98 3.47 -437.50 -1.52 -16.50 16 6 N -0.31 -8.25 11.62 -59.41 -0.69 -8.94 16 7 C 0.26 5.58 12.66 179.82 2.28 7.86 16 8 N -0.56 -16.53 2.70 -660.09 -1.78 -18.31 16 9 C 0.14 3.53 6.41 86.38 0.55 4.09 16 10 C 0.03 0.90 6.28 71.98 0.45 1.35 16 11 O -0.41 -21.16 10.08 -148.98 -1.50 -22.66 16 12 C 0.21 12.61 5.69 71.24 0.41 13.01 16 13 C -0.55 -35.15 9.43 25.60 0.24 -34.90 16 14 H 0.04 2.97 7.81 -2.91 -0.02 2.95 16 15 C 0.01 0.73 5.46 84.66 0.46 1.19 16 16 N -0.93 -56.97 13.29 21.45 0.28 -56.69 16 17 Si 0.98 47.12 29.54 68.60 2.03 49.15 16 18 H -0.27 -13.41 7.11 99.48 0.71 -12.71 16 19 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 20 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 21 C 0.63 24.80 7.79 178.99 1.39 26.19 16 22 O -0.59 -28.93 15.66 -4.74 -0.07 -29.00 16 23 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 26 H 0.04 1.28 7.05 -2.39 -0.02 1.26 16 27 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 29 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 31 H 0.03 1.36 7.08 -2.39 -0.02 1.34 16 32 H 0.28 1.93 8.06 -2.91 -0.02 1.91 16 33 H 0.08 2.38 8.07 -2.39 -0.02 2.36 16 34 H 0.17 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 37 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 38 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 39 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -88.91 331.65 5.36 -83.55 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: 1.02 Total: 4.66 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: 7.59 Total: 14.73 kcal Atomic # 7 Polarization: -96.73 SS G_CDS: -3.70 Total: -100.43 kcal Atomic # 8 Polarization: -50.09 SS G_CDS: -1.58 Total: -51.66 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal Total: -88.91 5.36 -83.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338563554.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.097 kcal (2) G-P(sol) polarization free energy of solvation -88.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds