Wall clock time and date at job start Mon Mar 30 2020 05:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 112.84886 * 2 1 4 4 N 1.46496 * 109.47016 * 309.66758 * 3 2 1 5 5 C 1.34775 * 119.99817 * 179.97438 * 4 3 2 6 6 O 1.21584 * 120.00269 * 0.02562 * 5 4 3 7 7 N 1.34781 * 120.00228 * 179.97438 * 5 4 3 8 8 C 1.46492 * 120.00329 * 179.97438 * 7 5 4 9 9 C 1.50701 * 109.47431 * 179.97438 * 8 7 5 10 10 O 1.21293 * 119.99417 * 0.02562 * 9 8 7 11 11 N 1.34778 * 120.00359 * 179.97438 * 9 8 7 12 12 C 1.37095 * 119.99851 * 180.02562 * 11 9 8 13 13 H 1.07998 * 120.00096 * 0.02562 * 12 11 9 14 14 C 1.38958 * 119.99693 * 180.02562 * 12 11 9 15 15 N 1.31403 * 119.99962 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99882 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.46878 * 60.00187 * 16 14 12 18 18 H 1.48496 * 109.47068 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47317 * 300.00212 * 16 14 12 20 20 C 1.53790 * 113.61566 * 228.69532 * 2 1 3 21 21 C 1.53775 * 87.07946 * 220.01618 * 20 2 1 22 22 C 1.53773 * 113.61817 * 131.19813 * 2 1 3 23 23 H 1.09002 * 109.47153 * 288.80152 * 1 2 3 24 24 H 1.09001 * 109.46832 * 168.80343 * 1 2 3 25 25 H 1.09004 * 109.47261 * 48.80324 * 1 2 3 26 26 H 1.08995 * 109.46975 * 69.66849 * 3 2 1 27 27 H 1.09005 * 109.46841 * 189.66742 * 3 2 1 28 28 H 0.97006 * 120.00348 * 359.97438 * 4 3 2 29 29 H 0.97002 * 119.99850 * 0.02562 * 7 5 4 30 30 H 1.09001 * 109.47686 * 300.00377 * 8 7 5 31 31 H 1.09001 * 109.47452 * 60.00401 * 8 7 5 32 32 H 0.97002 * 119.99775 * 0.02562 * 11 9 8 33 33 H 0.97001 * 120.00359 * 180.02562 * 15 14 12 34 34 H 1.08995 * 113.61021 * 334.56688 * 20 2 1 35 35 H 1.08997 * 113.61084 * 105.46520 * 20 2 1 36 36 H 1.08998 * 113.61939 * 270.88180 * 21 20 2 37 37 H 1.08999 * 113.68872 * 139.98916 * 21 20 2 38 38 H 1.09001 * 113.62003 * 254.53090 * 22 2 1 39 39 H 1.09003 * 113.61658 * 25.43333 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4100 0.0000 4 7 1.5012 2.2023 -1.0632 5 6 1.8705 3.4846 -1.2524 6 8 2.7209 3.9837 -0.5411 7 7 1.2979 4.2135 -2.2309 8 6 1.6989 5.6074 -2.4362 9 6 0.9152 6.1919 -3.5831 10 8 0.1014 5.5110 -4.1708 11 7 1.1179 7.4714 -3.9551 12 6 0.4046 8.0031 -4.9981 13 1 -0.3200 7.3969 -5.5214 14 6 0.6139 9.3221 -5.3820 15 7 1.4959 10.0595 -4.7456 16 14 -0.3575 10.0465 -6.8036 17 1 -1.8082 9.9896 -6.4917 18 1 0.0485 11.4597 -7.0114 19 1 -0.0855 9.2663 -8.0375 20 6 2.1461 -0.9301 -1.0585 21 6 3.1923 -1.3135 0.0012 22 6 2.1461 -0.9280 1.0601 23 1 -0.3633 0.3312 0.9728 24 1 -0.3633 -1.0081 -0.1996 25 1 -0.3634 0.6769 -0.7733 26 1 1.9361 1.8834 0.9636 27 1 3.1988 1.3514 -0.1726 28 1 0.8230 1.8041 -1.6310 29 1 0.6197 3.8153 -2.7987 30 1 1.4997 6.1801 -1.5304 31 1 2.7636 5.6492 -2.6657 32 1 1.7684 8.0159 -3.4848 33 1 1.6418 10.9804 -5.0133 34 1 1.4945 -1.7548 -1.3473 35 1 2.5649 -0.4006 -1.9142 36 1 4.0711 -0.6686 0.0006 37 1 3.4454 -2.3737 0.0032 38 1 2.5651 -0.3971 1.9149 39 1 1.4946 -1.7523 1.3506 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345115706.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:16 Heat of formation + Delta-G solvation = -57.213724 kcal Electronic energy + Delta-G solvation = -20113.421115 eV Core-core repulsion = 16863.384640 eV Total energy + Delta-G solvation = -3250.036475 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.36075 -39.27787 -38.10455 -34.47666 -34.22357 -33.59982 -31.36388 -30.18698 -27.99380 -26.24877 -25.88076 -24.30371 -22.54669 -20.64993 -19.56220 -18.99566 -18.21642 -17.77730 -16.32709 -15.75603 -15.63678 -15.24777 -14.95999 -14.65436 -14.36398 -14.11373 -13.83732 -13.74614 -13.43447 -13.15634 -12.98651 -12.43512 -12.15324 -11.89107 -11.75215 -11.61731 -11.48308 -11.09408 -10.78939 -10.49901 -10.46735 -10.40256 -10.30367 -9.99593 -9.61220 -9.10553 -8.60638 -8.55215 -8.08477 -6.49850 -3.91930 2.85409 3.14716 3.22348 3.26387 3.44552 3.77243 4.09436 4.19727 4.29946 4.32872 4.53827 4.59146 4.83265 4.92762 5.18784 5.20365 5.31951 5.39889 5.46988 5.49170 5.60648 5.64437 5.72139 5.81786 5.84484 5.95682 6.03529 6.08790 6.10616 6.16021 6.56083 6.79056 7.14186 7.47136 7.93832 8.27691 8.47056 8.83843 9.06075 9.41282 9.89328 10.67048 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.050433 B = 0.002893 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.061084 B = 9677.350348 C = 9946.144948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.101 4.101 3 C 0.166 3.834 4 N -0.747 5.747 5 C 0.704 3.296 6 O -0.599 6.599 7 N -0.725 5.725 8 C 0.129 3.871 9 C 0.429 3.571 10 O -0.598 6.598 11 N -0.549 5.549 12 C -0.305 4.305 13 H 0.105 0.895 14 C 0.026 3.974 15 N -0.895 5.895 16 Si 0.934 3.066 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.273 1.273 20 C -0.133 4.133 21 C -0.144 4.144 22 C -0.126 4.126 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.396 0.604 29 H 0.406 0.594 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.396 0.604 33 H 0.275 0.725 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.999 -19.079 9.345 21.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.101 4.101 3 C 0.041 3.959 4 N -0.404 5.404 5 C 0.403 3.597 6 O -0.478 6.478 7 N -0.382 5.382 8 C 0.000 4.000 9 C 0.215 3.785 10 O -0.485 6.485 11 N -0.184 5.184 12 C -0.435 4.435 13 H 0.122 0.878 14 C -0.177 4.177 15 N -0.535 5.535 16 Si 0.760 3.240 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.198 1.198 20 C -0.171 4.171 21 C -0.181 4.181 22 C -0.164 4.164 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.231 0.769 29 H 0.243 0.757 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.230 0.770 33 H 0.085 0.915 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.310 -18.813 9.563 21.144 hybrid contribution -0.667 0.453 -0.941 1.239 sum 0.643 -18.359 8.622 20.293 Atomic orbital electron populations 1.21737 0.93694 1.01814 1.02244 1.22069 0.95823 0.93909 0.98306 1.20850 0.96780 0.87831 0.90428 1.45065 1.45849 1.11259 1.38237 1.15857 0.81665 0.80933 0.81202 1.90900 1.35802 1.71485 1.49644 1.44767 1.44913 1.12743 1.35815 1.20773 0.99284 0.81399 0.98519 1.19776 0.87477 0.83761 0.87524 1.90487 1.39332 1.60448 1.58239 1.41782 1.36655 1.09566 1.30416 1.19679 1.19286 0.95493 1.09027 0.87755 1.25321 0.97136 0.96183 0.99067 1.69605 1.33463 1.09362 1.41096 0.85872 0.79659 0.77705 0.80730 1.19797 1.20861 1.19791 1.23042 0.98167 0.98938 0.96934 1.22847 0.97309 1.01391 0.96572 1.22932 0.98048 0.98766 0.96665 0.92195 0.92275 0.92363 0.91496 0.91484 0.76881 0.75664 0.90041 0.90049 0.77002 0.91540 0.89948 0.91151 0.89973 0.91500 0.91136 0.89745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.05 37.16 0.34 -0.68 16 2 C -0.10 -0.80 1.07 -153.69 -0.16 -0.96 16 3 C 0.17 1.79 5.02 -4.04 -0.02 1.77 16 4 N -0.75 -9.21 5.27 -65.22 -0.34 -9.56 16 5 C 0.70 11.72 8.57 -86.92 -0.74 10.98 16 6 O -0.60 -12.02 16.34 5.29 0.09 -11.93 16 7 N -0.72 -12.46 5.53 -66.42 -0.37 -12.82 16 8 C 0.13 2.44 6.15 -5.20 -0.03 2.41 16 9 C 0.43 9.95 7.85 -10.98 -0.09 9.86 16 10 O -0.60 -15.39 15.24 5.55 0.08 -15.30 16 11 N -0.55 -13.74 5.29 -10.96 -0.06 -13.80 16 12 C -0.31 -8.35 9.68 -14.93 -0.14 -8.49 16 13 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 14 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 15 N -0.90 -24.05 13.05 55.50 0.72 -23.32 16 16 Si 0.93 20.62 29.55 -169.99 -5.02 15.60 16 17 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 18 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 19 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 20 C -0.13 -1.00 7.21 -25.92 -0.19 -1.19 16 21 C -0.14 -1.01 7.73 -25.92 -0.20 -1.21 16 22 C -0.13 -0.87 7.23 -25.92 -0.19 -1.05 16 23 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.06 0.38 7.94 -51.93 -0.41 -0.03 16 25 H 0.06 0.45 6.33 -51.93 -0.33 0.12 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.07 0.78 7.34 -51.93 -0.38 0.40 16 28 H 0.40 4.08 6.86 -40.82 -0.28 3.80 16 29 H 0.41 6.76 7.45 -40.82 -0.30 6.45 16 30 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 31 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 32 H 0.40 9.54 7.90 -40.82 -0.32 9.22 16 33 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 34 H 0.08 0.55 7.96 -51.93 -0.41 0.13 16 35 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 36 H 0.08 0.62 7.64 -51.93 -0.40 0.22 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.49 8.10 -51.93 -0.42 0.07 16 39 H 0.08 0.50 8.10 -51.93 -0.42 0.08 16 LS Contribution 326.55 15.07 4.92 4.92 Total: -1.00 -31.47 326.55 -7.23 -38.70 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: -5.72 Total: 15.52 kcal Atomic # 6 Polarization: 13.53 SS G_CDS: -1.53 Total: 12.01 kcal Atomic # 7 Polarization: -59.46 SS G_CDS: -0.04 Total: -59.50 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: 0.17 Total: -27.24 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.47 -7.23 -38.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345115706.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.516 kcal (2) G-P(sol) polarization free energy of solvation -31.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds