Wall clock time and date at job start Mon Mar 30 2020 05:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 112.84886 * 2 1 4 4 N 1.46496 * 109.47016 * 309.66758 * 3 2 1 5 5 C 1.34775 * 119.99817 * 179.97438 * 4 3 2 6 6 O 1.21584 * 120.00269 * 0.02562 * 5 4 3 7 7 N 1.34781 * 120.00228 * 179.97438 * 5 4 3 8 8 C 1.46492 * 120.00329 * 179.97438 * 7 5 4 9 9 C 1.50701 * 109.47431 * 179.97438 * 8 7 5 10 10 O 1.21293 * 119.99417 * 0.02562 * 9 8 7 11 11 N 1.34778 * 120.00359 * 179.97438 * 9 8 7 12 12 C 1.37095 * 119.99851 * 180.02562 * 11 9 8 13 13 H 1.07998 * 120.00096 * 0.02562 * 12 11 9 14 14 C 1.38958 * 119.99693 * 180.02562 * 12 11 9 15 15 N 1.31403 * 119.99962 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99882 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.46878 * 60.00187 * 16 14 12 18 18 H 1.48496 * 109.47068 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47317 * 300.00212 * 16 14 12 20 20 C 1.53790 * 113.61566 * 228.69532 * 2 1 3 21 21 C 1.53775 * 87.07946 * 220.01618 * 20 2 1 22 22 C 1.53773 * 113.61817 * 131.19813 * 2 1 3 23 23 H 1.09002 * 109.47153 * 288.80152 * 1 2 3 24 24 H 1.09001 * 109.46832 * 168.80343 * 1 2 3 25 25 H 1.09004 * 109.47261 * 48.80324 * 1 2 3 26 26 H 1.08995 * 109.46975 * 69.66849 * 3 2 1 27 27 H 1.09005 * 109.46841 * 189.66742 * 3 2 1 28 28 H 0.97006 * 120.00348 * 359.97438 * 4 3 2 29 29 H 0.97002 * 119.99850 * 0.02562 * 7 5 4 30 30 H 1.09001 * 109.47686 * 300.00377 * 8 7 5 31 31 H 1.09001 * 109.47452 * 60.00401 * 8 7 5 32 32 H 0.97002 * 119.99775 * 0.02562 * 11 9 8 33 33 H 0.97001 * 120.00359 * 180.02562 * 15 14 12 34 34 H 1.08995 * 113.61021 * 334.56688 * 20 2 1 35 35 H 1.08997 * 113.61084 * 105.46520 * 20 2 1 36 36 H 1.08998 * 113.61939 * 270.88180 * 21 20 2 37 37 H 1.08999 * 113.68872 * 139.98916 * 21 20 2 38 38 H 1.09001 * 113.62003 * 254.53090 * 22 2 1 39 39 H 1.09003 * 113.61658 * 25.43333 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4100 0.0000 4 7 1.5012 2.2023 -1.0632 5 6 1.8705 3.4846 -1.2524 6 8 2.7209 3.9837 -0.5411 7 7 1.2979 4.2135 -2.2309 8 6 1.6989 5.6074 -2.4362 9 6 0.9152 6.1919 -3.5831 10 8 0.1014 5.5110 -4.1708 11 7 1.1179 7.4714 -3.9551 12 6 0.4046 8.0031 -4.9981 13 1 -0.3200 7.3969 -5.5214 14 6 0.6139 9.3221 -5.3820 15 7 1.4959 10.0595 -4.7456 16 14 -0.3575 10.0465 -6.8036 17 1 -1.8082 9.9896 -6.4917 18 1 0.0485 11.4597 -7.0114 19 1 -0.0855 9.2663 -8.0375 20 6 2.1461 -0.9301 -1.0585 21 6 3.1923 -1.3135 0.0012 22 6 2.1461 -0.9280 1.0601 23 1 -0.3633 0.3312 0.9728 24 1 -0.3633 -1.0081 -0.1996 25 1 -0.3634 0.6769 -0.7733 26 1 1.9361 1.8834 0.9636 27 1 3.1988 1.3514 -0.1726 28 1 0.8230 1.8041 -1.6310 29 1 0.6197 3.8153 -2.7987 30 1 1.4997 6.1801 -1.5304 31 1 2.7636 5.6492 -2.6657 32 1 1.7684 8.0159 -3.4848 33 1 1.6418 10.9804 -5.0133 34 1 1.4945 -1.7548 -1.3473 35 1 2.5649 -0.4006 -1.9142 36 1 4.0711 -0.6686 0.0006 37 1 3.4454 -2.3737 0.0032 38 1 2.5651 -0.3971 1.9149 39 1 1.4946 -1.7523 1.3506 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345115706.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:15 Heat of formation + Delta-G solvation = -80.061350 kcal Electronic energy + Delta-G solvation = -20114.411862 eV Core-core repulsion = 16863.384640 eV Total energy + Delta-G solvation = -3251.027222 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.41966 -40.45498 -39.77703 -36.25257 -35.40027 -35.25853 -33.36700 -30.93255 -29.39288 -27.41995 -26.55822 -26.02993 -23.20563 -21.94891 -21.36575 -20.15422 -19.95565 -18.96210 -17.46461 -17.37044 -16.99192 -16.50838 -16.32675 -15.97392 -15.86999 -15.46159 -15.14164 -15.00141 -14.45311 -14.06465 -13.93346 -13.76308 -13.53438 -13.48121 -13.02608 -12.88710 -12.46612 -12.40680 -12.13337 -12.08631 -11.55756 -11.50714 -11.38740 -11.03099 -11.02075 -10.55284 -10.42231 -10.10012 -9.80009 -8.50423 -6.00791 1.38609 1.42707 1.52959 1.62037 1.90338 2.11474 2.29193 3.04551 3.16779 3.31501 3.59100 3.65772 3.75094 4.00349 4.16301 4.21593 4.43367 4.46257 4.55233 4.64808 4.72797 4.90088 4.92423 4.93579 4.96138 5.12607 5.20942 5.26847 5.30954 5.38871 5.44922 5.53008 5.57902 5.91565 5.95983 6.48578 7.02243 7.03717 7.43030 7.53080 7.94847 8.66362 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.050433 B = 0.002893 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.061084 B = 9677.350348 C = 9946.144948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.099 4.099 3 C 0.164 3.836 4 N -0.729 5.729 5 C 0.703 3.297 6 O -0.634 6.634 7 N -0.724 5.724 8 C 0.142 3.858 9 C 0.434 3.566 10 O -0.624 6.624 11 N -0.559 5.559 12 C -0.338 4.338 13 H 0.087 0.913 14 C -0.011 4.011 15 N -0.917 5.917 16 Si 0.997 3.003 17 H -0.270 1.270 18 H -0.272 1.272 19 H -0.269 1.269 20 C -0.131 4.131 21 C -0.145 4.145 22 C -0.120 4.120 23 H 0.058 0.942 24 H 0.074 0.926 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.408 0.592 29 H 0.410 0.590 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.399 0.601 33 H 0.280 0.720 34 H 0.096 0.904 35 H 0.057 0.943 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.512 -20.155 9.395 22.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.099 4.099 3 C 0.040 3.960 4 N -0.386 5.386 5 C 0.403 3.597 6 O -0.516 6.516 7 N -0.382 5.382 8 C 0.013 3.987 9 C 0.221 3.779 10 O -0.512 6.512 11 N -0.195 5.195 12 C -0.467 4.467 13 H 0.105 0.895 14 C -0.211 4.211 15 N -0.557 5.557 16 Si 0.820 3.180 17 H -0.195 1.195 18 H -0.196 1.196 19 H -0.195 1.195 20 C -0.169 4.169 21 C -0.182 4.182 22 C -0.158 4.158 23 H 0.077 0.923 24 H 0.093 0.907 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.245 0.755 29 H 0.247 0.753 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.233 0.767 33 H 0.090 0.910 34 H 0.115 0.885 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.816 -19.931 9.625 22.149 hybrid contribution -0.498 0.715 -0.910 1.260 sum 0.319 -19.216 8.715 21.102 Atomic orbital electron populations 1.21746 0.92997 1.02651 1.02026 1.22004 0.96218 0.92222 0.99459 1.20960 0.96469 0.89242 0.89322 1.44986 1.45463 1.09803 1.38317 1.15967 0.81246 0.81900 0.80615 1.90877 1.37367 1.72506 1.50806 1.44680 1.45159 1.12126 1.36218 1.20579 0.98898 0.82336 0.96890 1.20400 0.86795 0.83015 0.87683 1.90464 1.40442 1.60954 1.59326 1.41831 1.36908 1.10289 1.30437 1.19711 1.20297 0.96277 1.10447 0.89520 1.26140 0.97802 0.95983 1.01223 1.69673 1.34137 1.09755 1.42102 0.84922 0.78248 0.77261 0.77526 1.19455 1.19646 1.19453 1.23063 0.98430 0.99023 0.96361 1.22849 0.96982 1.01953 0.96418 1.22949 0.97959 0.98709 0.96201 0.92318 0.90740 0.92881 0.92329 0.92380 0.75461 0.75252 0.89086 0.89120 0.76696 0.91048 0.88513 0.92400 0.90886 0.90333 0.91316 0.88169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.05 71.98 0.65 -1.10 16 2 C -0.10 -1.41 1.07 -51.65 -0.06 -1.46 16 3 C 0.16 3.42 5.02 86.38 0.43 3.86 16 4 N -0.73 -17.37 5.27 -478.54 -2.52 -19.90 16 5 C 0.70 23.01 8.57 179.05 1.53 24.55 16 6 O -0.63 -25.25 16.34 -3.98 -0.07 -25.32 16 7 N -0.72 -24.44 5.53 -482.31 -2.67 -27.11 16 8 C 0.14 5.32 6.15 85.63 0.53 5.84 16 9 C 0.43 20.20 7.85 87.66 0.69 20.88 16 10 O -0.62 -32.26 15.24 -3.07 -0.05 -32.31 16 11 N -0.56 -28.28 5.29 -306.98 -1.62 -29.90 16 12 C -0.34 -18.68 9.68 84.04 0.81 -17.86 16 13 H 0.09 5.01 7.16 -2.91 -0.02 4.99 16 14 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 15 N -0.92 -48.96 13.05 21.66 0.28 -48.68 16 16 Si 1.00 41.78 29.55 68.60 2.03 43.81 16 17 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 18 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 19 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 20 C -0.13 -1.73 7.21 31.12 0.22 -1.51 16 21 C -0.14 -1.79 7.73 31.12 0.24 -1.55 16 22 C -0.12 -1.41 7.23 31.12 0.23 -1.19 16 23 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.07 0.74 7.94 -2.39 -0.02 0.72 16 25 H 0.05 0.73 6.33 -2.38 -0.02 0.71 16 26 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.06 1.34 7.34 -2.38 -0.02 1.32 16 28 H 0.41 7.91 6.86 -92.70 -0.64 7.27 16 29 H 0.41 13.37 7.45 -92.71 -0.69 12.68 16 30 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 31 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 32 H 0.40 19.43 7.90 -92.71 -0.73 18.69 16 33 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 34 H 0.10 1.02 7.96 -2.39 -0.02 1.00 16 35 H 0.06 0.91 8.10 -2.39 -0.02 0.90 16 36 H 0.07 1.04 7.64 -2.39 -0.02 1.02 16 37 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.07 0.85 8.10 -2.39 -0.02 0.83 16 39 H 0.10 0.90 8.10 -2.39 -0.02 0.88 16 Total: -1.00 -66.45 326.55 0.16 -66.29 By element: Atomic # 1 Polarization: 43.74 SS G_CDS: -0.97 Total: 42.76 kcal Atomic # 6 Polarization: 24.61 SS G_CDS: 5.75 Total: 30.36 kcal Atomic # 7 Polarization: -119.06 SS G_CDS: -6.53 Total: -125.59 kcal Atomic # 8 Polarization: -57.51 SS G_CDS: -0.11 Total: -57.62 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -66.45 0.16 -66.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345115706.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.775 kcal (2) G-P(sol) polarization free energy of solvation -66.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds