Wall clock time and date at job start Mon Mar 30 2020 05:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21284 * 120.00112 * 2 1 4 4 N 1.34778 * 119.99922 * 180.02562 * 2 1 3 5 5 C 1.47080 * 120.87951 * 5.38311 * 4 2 1 6 6 C 1.53690 * 108.27535 * 128.75655 * 5 4 2 7 7 N 1.46900 * 109.25633 * 54.08195 * 6 5 4 8 8 C 1.46904 * 111.00134 * 172.60255 * 7 6 5 9 9 C 1.50708 * 109.46836 * 59.94970 * 8 7 6 10 10 O 1.21294 * 119.99710 * 4.97532 * 9 8 7 11 11 N 1.34771 * 120.00152 * 184.97800 * 9 8 7 12 12 C 1.37096 * 120.00298 * 180.02562 * 11 9 8 13 13 H 1.08003 * 119.99654 * 359.97438 * 12 11 9 14 14 C 1.38941 * 120.00232 * 179.97438 * 12 11 9 15 15 N 1.31410 * 120.00179 * 179.97438 * 14 12 11 16 16 Si 1.86804 * 120.00161 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47352 * 89.99720 * 16 14 12 18 18 H 1.48504 * 109.47135 * 210.00269 * 16 14 12 19 19 H 1.48508 * 109.46952 * 329.99469 * 16 14 12 20 20 C 1.46892 * 111.27044 * 296.75369 * 7 6 5 21 21 H 1.09000 * 109.49449 * 303.14398 * 20 7 6 22 22 C 1.52997 * 109.51755 * 183.07813 * 20 7 6 23 23 C 1.47072 * 120.88148 * 185.66325 * 4 2 1 24 24 H 1.08997 * 109.47328 * 185.56845 * 1 2 3 25 25 H 1.09003 * 109.47049 * 65.57091 * 1 2 3 26 26 H 1.09002 * 109.47272 * 305.57751 * 1 2 3 27 27 H 1.09001 * 109.62773 * 248.52225 * 5 4 2 28 28 H 1.09002 * 109.62927 * 9.10570 * 5 4 2 29 29 H 1.09000 * 109.65091 * 294.07827 * 6 5 4 30 30 H 1.09004 * 109.44392 * 173.95563 * 6 5 4 31 31 H 1.08994 * 109.47336 * 179.97438 * 8 7 6 32 32 H 1.08993 * 109.47247 * 299.95163 * 8 7 6 33 33 H 0.97004 * 119.99524 * 359.97438 * 11 9 8 34 34 H 0.97007 * 120.00366 * 180.02562 * 15 14 12 35 35 H 1.09006 * 109.47288 * 309.07027 * 22 20 7 36 36 H 1.08995 * 109.47471 * 69.07019 * 22 20 7 37 37 H 1.09002 * 109.47443 * 189.07401 * 22 20 7 38 38 H 1.09009 * 109.63283 * 350.89460 * 23 4 2 39 39 H 1.09002 * 109.62954 * 111.27733 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4699 -2.4493 -0.1195 6 6 2.1257 -3.2611 -1.2477 7 7 3.5675 -3.3727 -0.9893 8 6 4.2048 -4.2864 -1.9469 9 6 4.0026 -3.7674 -3.3473 10 8 3.4675 -2.6934 -3.5246 11 7 4.4162 -4.4967 -4.4025 12 6 4.2327 -4.0244 -5.6764 13 1 3.7563 -3.0680 -5.8343 14 6 4.6595 -4.7759 -6.7642 15 7 4.4832 -4.3234 -7.9853 16 14 5.4829 -6.4304 -6.4912 17 1 4.4522 -7.4993 -6.4732 18 1 6.4471 -6.6908 -7.5901 19 1 6.2040 -6.4161 -5.1930 20 6 4.2158 -2.0547 -1.0079 21 1 4.0259 -1.5694 -1.9653 22 6 5.7236 -2.2239 -0.8114 23 6 3.6461 -1.1930 0.1240 24 1 -0.3634 -1.0228 0.0997 25 1 -0.3633 0.4250 -0.9357 26 1 -0.3634 0.5979 0.8358 27 1 1.5430 -2.9970 0.8200 28 1 0.4225 -2.2662 -0.3595 29 1 1.9650 -2.7591 -2.2018 30 1 1.6842 -4.2572 -1.2819 31 1 5.2717 -4.3503 -1.7333 32 1 3.7570 -5.2761 -1.8580 33 1 4.8444 -5.3555 -4.2606 34 1 4.7809 -4.8483 -8.7448 35 1 5.9084 -2.8475 0.0633 36 1 6.1540 -2.6983 -1.6933 37 1 6.1828 -1.2463 -0.6641 38 1 4.0383 -0.1790 0.0452 39 1 3.9242 -1.6191 1.0880 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357307693.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:36 Heat of formation + Delta-G solvation = -47.191269 kcal Electronic energy + Delta-G solvation = -21653.345860 eV Core-core repulsion = 18403.743991 eV Total energy + Delta-G solvation = -3249.601869 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.30009 -39.00733 -37.16961 -34.68080 -33.88285 -32.43421 -31.78726 -30.13429 -28.84132 -26.80805 -25.41202 -23.63758 -22.71461 -20.45400 -19.48562 -19.00989 -18.10513 -17.06947 -16.15182 -16.07660 -15.36998 -15.33184 -15.00478 -14.55871 -14.28504 -14.07626 -13.54552 -13.31189 -13.09341 -12.91055 -12.56581 -12.33859 -12.12364 -11.92753 -11.72393 -11.63062 -11.44678 -11.26389 -10.91981 -10.79370 -10.66021 -10.56914 -10.08100 -9.69013 -9.58115 -9.40147 -8.59393 -8.25959 -7.56420 -6.39904 -3.91496 2.69788 2.96406 3.00711 3.07782 3.09737 3.59529 4.02549 4.11082 4.56665 4.63499 4.93219 5.02498 5.06321 5.15427 5.32647 5.34032 5.37746 5.46864 5.53317 5.68192 5.73481 5.77941 5.82907 5.84413 5.86225 5.91937 6.08761 6.25947 6.41939 6.53523 6.66735 7.12485 7.28524 7.47094 7.52038 8.06042 8.24042 8.48668 8.85626 9.33075 9.71208 10.72855 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.029297 B = 0.004811 C = 0.004599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.501831 B = 5818.440255 C = 6087.449077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.513 3.487 3 O -0.555 6.555 4 N -0.610 5.610 5 C 0.112 3.888 6 C 0.021 3.979 7 N -0.508 5.508 8 C 0.035 3.965 9 C 0.414 3.586 10 O -0.575 6.575 11 N -0.583 5.583 12 C -0.308 4.308 13 H 0.118 0.882 14 C 0.043 3.957 15 N -0.878 5.878 16 Si 0.880 3.120 17 H -0.270 1.270 18 H -0.276 1.276 19 H -0.268 1.268 20 C 0.049 3.951 21 H 0.089 0.911 22 C -0.144 4.144 23 C 0.125 3.875 24 H 0.081 0.919 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.371 0.629 34 H 0.274 0.726 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.090 0.910 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.707 -1.750 16.782 17.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.302 3.698 3 O -0.433 6.433 4 N -0.343 5.343 5 C -0.011 4.011 6 C -0.108 4.108 7 N -0.232 5.232 8 C -0.097 4.097 9 C 0.200 3.800 10 O -0.460 6.460 11 N -0.221 5.221 12 C -0.437 4.437 13 H 0.136 0.864 14 C -0.160 4.160 15 N -0.517 5.517 16 Si 0.706 3.294 17 H -0.195 1.195 18 H -0.201 1.201 19 H -0.194 1.194 20 C -0.060 4.060 21 H 0.107 0.893 22 C -0.202 4.202 23 C 0.002 3.998 24 H 0.100 0.900 25 H 0.112 0.888 26 H 0.110 0.890 27 H 0.090 0.910 28 H 0.108 0.892 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.114 0.886 32 H 0.107 0.893 33 H 0.204 0.796 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.108 0.892 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.672 -0.691 16.900 17.308 hybrid contribution 0.599 -1.254 -0.952 1.685 sum -3.073 -1.945 15.947 16.357 Atomic orbital electron populations 1.21992 0.92138 1.04410 1.05135 1.20762 0.90573 0.83089 0.75386 1.90689 1.70702 1.31153 1.50783 1.48189 1.07705 1.06187 1.72229 1.22055 0.96131 0.83596 0.99342 1.22785 0.88429 1.00414 0.99122 1.62488 1.02891 1.10786 1.46993 1.22168 1.01402 0.97062 0.89049 1.21031 0.85090 0.87102 0.86777 1.90467 1.47353 1.22714 1.85502 1.42403 1.53540 1.19295 1.06836 1.19443 1.37720 1.06856 0.79714 0.86392 1.25075 0.97613 0.98406 0.94953 1.69626 1.45878 1.38309 0.97876 0.86667 0.80073 0.84107 0.78535 1.19536 1.20089 1.19395 1.22234 0.93817 0.89987 0.99922 0.89290 1.21821 0.94412 1.01911 1.02025 1.21727 0.78994 1.00904 0.98181 0.90000 0.88762 0.88994 0.91041 0.89232 0.90054 0.90360 0.88638 0.89292 0.79607 0.91500 0.92067 0.92191 0.92172 0.89187 0.91470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.76 10.00 36.01 0.36 -1.40 16 2 C 0.51 7.58 7.80 -10.99 -0.09 7.50 16 3 O -0.55 -10.44 16.55 5.55 0.09 -10.35 16 4 N -0.61 -8.56 3.00 -172.18 -0.52 -9.08 16 5 C 0.11 1.28 6.41 -3.37 -0.02 1.26 16 6 C 0.02 0.30 5.15 -3.47 -0.02 0.29 16 7 N -0.51 -7.57 4.67 -227.49 -1.06 -8.64 16 8 C 0.04 0.55 5.40 -4.97 -0.03 0.52 16 9 C 0.41 8.79 7.19 -10.98 -0.08 8.72 16 10 O -0.58 -14.29 11.24 5.55 0.06 -14.23 16 11 N -0.58 -13.32 5.09 -10.96 -0.06 -13.37 16 12 C -0.31 -8.50 10.16 -14.94 -0.15 -8.65 16 13 H 0.12 3.76 7.39 -52.48 -0.39 3.37 16 14 C 0.04 1.16 5.50 -17.47 -0.10 1.06 16 15 N -0.88 -25.26 13.96 55.49 0.77 -24.48 16 16 Si 0.88 18.89 27.74 -169.99 -4.71 14.17 16 17 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 18 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 19 H -0.27 -5.23 6.52 56.52 0.37 -4.86 16 20 C 0.05 0.78 2.18 -67.59 -0.15 0.63 16 21 H 0.09 1.83 5.73 -51.93 -0.30 1.53 16 22 C -0.14 -1.95 8.40 37.16 0.31 -1.64 16 23 C 0.12 1.80 5.88 -3.61 -0.02 1.78 16 24 H 0.08 0.62 5.37 -51.93 -0.28 0.34 16 25 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.09 0.82 5.37 -51.93 -0.28 0.54 16 29 H 0.08 1.52 5.73 -51.93 -0.30 1.23 16 30 H 0.08 1.00 8.11 -51.93 -0.42 0.58 16 31 H 0.10 1.35 6.15 -51.93 -0.32 1.03 16 32 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.37 7.46 5.76 -40.82 -0.24 7.22 16 34 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.88 6.80 -51.93 -0.35 0.53 16 37 H 0.06 0.75 8.12 -51.93 -0.42 0.33 16 38 H 0.09 1.41 7.04 -51.92 -0.37 1.04 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 305.81 15.07 4.61 4.61 Total: -1.00 -33.51 305.81 -6.15 -39.66 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -5.36 Total: 11.65 kcal Atomic # 6 Polarization: 10.03 SS G_CDS: 0.02 Total: 10.06 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: -0.86 Total: -55.57 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: 0.15 Total: -24.58 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -4.71 Total: 14.17 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -33.51 -6.15 -39.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357307693.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.531 kcal (2) G-P(sol) polarization free energy of solvation -33.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds