Wall clock time and date at job start Mon Mar 30 2020 05:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21284 * 120.00112 * 2 1 4 4 N 1.34778 * 119.99922 * 180.02562 * 2 1 3 5 5 C 1.47080 * 120.87951 * 5.38311 * 4 2 1 6 6 C 1.53690 * 108.27535 * 128.75655 * 5 4 2 7 7 N 1.46900 * 109.25633 * 54.08195 * 6 5 4 8 8 C 1.46904 * 111.00134 * 172.60255 * 7 6 5 9 9 C 1.50708 * 109.46836 * 59.94970 * 8 7 6 10 10 O 1.21294 * 119.99710 * 4.97532 * 9 8 7 11 11 N 1.34771 * 120.00152 * 184.97800 * 9 8 7 12 12 C 1.37096 * 120.00298 * 180.02562 * 11 9 8 13 13 H 1.08003 * 119.99654 * 359.97438 * 12 11 9 14 14 C 1.38941 * 120.00232 * 179.97438 * 12 11 9 15 15 N 1.31410 * 120.00179 * 179.97438 * 14 12 11 16 16 Si 1.86804 * 120.00161 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47352 * 89.99720 * 16 14 12 18 18 H 1.48504 * 109.47135 * 210.00269 * 16 14 12 19 19 H 1.48508 * 109.46952 * 329.99469 * 16 14 12 20 20 C 1.46892 * 111.27044 * 296.75369 * 7 6 5 21 21 H 1.09000 * 109.49449 * 303.14398 * 20 7 6 22 22 C 1.52997 * 109.51755 * 183.07813 * 20 7 6 23 23 C 1.47072 * 120.88148 * 185.66325 * 4 2 1 24 24 H 1.08997 * 109.47328 * 185.56845 * 1 2 3 25 25 H 1.09003 * 109.47049 * 65.57091 * 1 2 3 26 26 H 1.09002 * 109.47272 * 305.57751 * 1 2 3 27 27 H 1.09001 * 109.62773 * 248.52225 * 5 4 2 28 28 H 1.09002 * 109.62927 * 9.10570 * 5 4 2 29 29 H 1.09000 * 109.65091 * 294.07827 * 6 5 4 30 30 H 1.09004 * 109.44392 * 173.95563 * 6 5 4 31 31 H 1.08994 * 109.47336 * 179.97438 * 8 7 6 32 32 H 1.08993 * 109.47247 * 299.95163 * 8 7 6 33 33 H 0.97004 * 119.99524 * 359.97438 * 11 9 8 34 34 H 0.97007 * 120.00366 * 180.02562 * 15 14 12 35 35 H 1.09006 * 109.47288 * 309.07027 * 22 20 7 36 36 H 1.08995 * 109.47471 * 69.07019 * 22 20 7 37 37 H 1.09002 * 109.47443 * 189.07401 * 22 20 7 38 38 H 1.09009 * 109.63283 * 350.89460 * 23 4 2 39 39 H 1.09002 * 109.62954 * 111.27733 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4699 -2.4493 -0.1195 6 6 2.1257 -3.2611 -1.2477 7 7 3.5675 -3.3727 -0.9893 8 6 4.2048 -4.2864 -1.9469 9 6 4.0026 -3.7674 -3.3473 10 8 3.4675 -2.6934 -3.5246 11 7 4.4162 -4.4967 -4.4025 12 6 4.2327 -4.0244 -5.6764 13 1 3.7563 -3.0680 -5.8343 14 6 4.6595 -4.7759 -6.7642 15 7 4.4832 -4.3234 -7.9853 16 14 5.4829 -6.4304 -6.4912 17 1 4.4522 -7.4993 -6.4732 18 1 6.4471 -6.6908 -7.5901 19 1 6.2040 -6.4161 -5.1930 20 6 4.2158 -2.0547 -1.0079 21 1 4.0259 -1.5694 -1.9653 22 6 5.7236 -2.2239 -0.8114 23 6 3.6461 -1.1930 0.1240 24 1 -0.3634 -1.0228 0.0997 25 1 -0.3633 0.4250 -0.9357 26 1 -0.3634 0.5979 0.8358 27 1 1.5430 -2.9970 0.8200 28 1 0.4225 -2.2662 -0.3595 29 1 1.9650 -2.7591 -2.2018 30 1 1.6842 -4.2572 -1.2819 31 1 5.2717 -4.3503 -1.7333 32 1 3.7570 -5.2761 -1.8580 33 1 4.8444 -5.3555 -4.2606 34 1 4.7809 -4.8483 -8.7448 35 1 5.9084 -2.8475 0.0633 36 1 6.1540 -2.6983 -1.6933 37 1 6.1828 -1.2463 -0.6641 38 1 4.0383 -0.1790 0.0452 39 1 3.9242 -1.6191 1.0880 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357307693.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:35 Heat of formation + Delta-G solvation = -75.047520 kcal Electronic energy + Delta-G solvation = -21654.553797 eV Core-core repulsion = 18403.743991 eV Total energy + Delta-G solvation = -3250.809806 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.57172 -40.47222 -38.61976 -36.20050 -35.51794 -33.81661 -33.59021 -31.14440 -30.07904 -28.05202 -26.92887 -25.15784 -23.85033 -21.81182 -21.25691 -20.37381 -19.72302 -18.19533 -17.75868 -17.32037 -16.81457 -16.54291 -16.43739 -15.91965 -15.81157 -15.51871 -14.95981 -14.64904 -14.50190 -14.26472 -13.98566 -13.74655 -13.15496 -13.07275 -12.99905 -12.86714 -12.71392 -12.50093 -12.44374 -12.12855 -12.02440 -11.95764 -11.87102 -11.37964 -11.06676 -10.84821 -10.24487 -9.76875 -9.03512 -8.44613 -6.05500 1.28802 1.33682 1.43208 1.56304 1.90461 2.03812 2.20810 2.89902 2.95397 3.12737 3.60736 3.90999 3.95068 4.06211 4.16948 4.25120 4.37776 4.44649 4.49306 4.59187 4.60327 4.63903 4.69455 4.72835 4.77167 4.91490 5.08157 5.14171 5.17665 5.36462 5.46476 5.50242 5.85485 5.95718 6.02390 6.43048 6.55113 6.85768 7.11536 7.36440 7.93572 8.73166 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.029297 B = 0.004811 C = 0.004599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.501831 B = 5818.440255 C = 6087.449077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.499 3.501 3 O -0.608 6.608 4 N -0.615 5.615 5 C 0.115 3.885 6 C 0.017 3.983 7 N -0.489 5.489 8 C 0.043 3.957 9 C 0.417 3.583 10 O -0.615 6.615 11 N -0.588 5.588 12 C -0.328 4.328 13 H 0.050 0.950 14 C -0.015 4.015 15 N -0.936 5.936 16 Si 0.966 3.034 17 H -0.255 1.255 18 H -0.277 1.277 19 H -0.229 1.229 20 C 0.051 3.949 21 H 0.031 0.969 22 C -0.138 4.138 23 C 0.127 3.873 24 H 0.111 0.889 25 H 0.093 0.907 26 H 0.110 0.890 27 H 0.104 0.896 28 H 0.116 0.884 29 H 0.031 0.969 30 H 0.103 0.897 31 H 0.121 0.879 32 H 0.127 0.873 33 H 0.390 0.610 34 H 0.279 0.721 35 H 0.090 0.910 36 H 0.045 0.955 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.533 -5.163 20.083 21.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.290 3.710 3 O -0.490 6.490 4 N -0.347 5.347 5 C -0.007 4.007 6 C -0.112 4.112 7 N -0.212 5.212 8 C -0.089 4.089 9 C 0.205 3.795 10 O -0.501 6.501 11 N -0.229 5.229 12 C -0.458 4.458 13 H 0.068 0.932 14 C -0.214 4.214 15 N -0.576 5.576 16 Si 0.785 3.215 17 H -0.179 1.179 18 H -0.202 1.202 19 H -0.152 1.152 20 C -0.058 4.058 21 H 0.049 0.951 22 C -0.196 4.196 23 C 0.004 3.996 24 H 0.129 0.871 25 H 0.112 0.888 26 H 0.128 0.872 27 H 0.122 0.878 28 H 0.133 0.867 29 H 0.049 0.951 30 H 0.121 0.879 31 H 0.139 0.861 32 H 0.145 0.855 33 H 0.225 0.775 34 H 0.088 0.912 35 H 0.109 0.891 36 H 0.064 0.936 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.518 -4.125 20.241 20.955 hybrid contribution 0.463 -0.041 -1.963 2.018 sum -3.055 -4.165 18.278 18.994 Atomic orbital electron populations 1.22023 0.88213 1.06697 1.05850 1.21705 0.92579 0.82467 0.74223 1.90658 1.72126 1.32983 1.53230 1.48413 1.07726 1.07173 1.71385 1.22272 0.96812 0.82058 0.99537 1.22851 0.88544 1.01754 0.98018 1.62614 1.03136 1.09927 1.45532 1.22388 1.03601 0.98427 0.84469 1.22375 0.82375 0.86005 0.88758 1.90504 1.48228 1.24706 1.86662 1.42240 1.54922 1.20410 1.05327 1.18965 1.38877 1.05201 0.82723 0.93201 1.26158 0.97812 1.03611 0.93801 1.69816 1.47594 1.40854 0.99347 0.85357 0.79034 0.76950 0.80123 1.17917 1.20244 1.15247 1.22115 0.95719 0.90280 0.97677 0.95084 1.21793 0.92464 1.02802 1.02577 1.21652 0.79650 0.99574 0.98718 0.87086 0.88810 0.87195 0.87826 0.86667 0.95103 0.87851 0.86084 0.85497 0.77465 0.91161 0.89070 0.93558 0.91720 0.91397 0.88668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.03 10.00 71.24 0.71 -2.32 16 2 C 0.50 14.61 7.80 87.66 0.68 15.29 16 3 O -0.61 -23.68 16.55 -3.04 -0.05 -23.73 16 4 N -0.61 -16.53 3.00 -817.05 -2.45 -18.98 16 5 C 0.11 2.27 6.41 86.50 0.55 2.83 16 6 C 0.02 0.46 5.15 86.54 0.45 0.90 16 7 N -0.49 -13.36 4.67 -873.65 -4.08 -17.45 16 8 C 0.04 1.21 5.40 85.56 0.46 1.67 16 9 C 0.42 17.79 7.19 87.66 0.63 18.42 16 10 O -0.61 -32.33 11.24 -3.07 -0.03 -32.37 16 11 N -0.59 -26.80 5.09 -306.99 -1.56 -28.36 16 12 C -0.33 -18.99 10.16 84.04 0.85 -18.14 16 13 H 0.05 3.48 7.39 -2.91 -0.02 3.46 16 14 C -0.02 -0.83 5.50 84.92 0.47 -0.37 16 15 N -0.94 -56.36 13.96 21.66 0.30 -56.06 16 16 Si 0.97 38.05 27.74 68.60 1.90 39.95 16 17 H -0.25 -9.44 7.11 99.48 0.71 -8.73 16 18 H -0.28 -10.96 7.11 99.48 0.71 -10.26 16 19 H -0.23 -7.51 6.52 99.48 0.65 -6.86 16 20 C 0.05 1.60 2.18 45.00 0.10 1.70 16 21 H 0.03 1.36 5.73 -2.39 -0.01 1.34 16 22 C -0.14 -3.54 8.40 71.98 0.60 -2.94 16 23 C 0.13 3.57 5.88 86.35 0.51 4.08 16 24 H 0.11 1.28 5.37 -2.39 -0.01 1.27 16 25 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.12 1.67 5.37 -2.39 -0.01 1.66 16 29 H 0.03 1.18 5.73 -2.39 -0.01 1.16 16 30 H 0.10 2.26 8.11 -2.38 -0.02 2.24 16 31 H 0.12 2.91 6.15 -2.39 -0.01 2.90 16 32 H 0.13 2.75 8.14 -2.39 -0.02 2.73 16 33 H 0.39 14.61 5.76 -92.71 -0.53 14.07 16 34 H 0.28 15.35 8.31 -92.70 -0.77 14.58 16 35 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 36 H 0.05 1.30 6.80 -2.39 -0.02 1.28 16 37 H 0.06 1.58 8.12 -2.39 -0.02 1.56 16 38 H 0.07 2.20 7.04 -2.38 -0.02 2.19 16 39 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -83.09 305.81 0.52 -82.57 By element: Atomic # 1 Polarization: 32.83 SS G_CDS: 0.48 Total: 33.31 kcal Atomic # 6 Polarization: 15.10 SS G_CDS: 6.02 Total: 21.12 kcal Atomic # 7 Polarization: -113.05 SS G_CDS: -7.80 Total: -120.85 kcal Atomic # 8 Polarization: -56.02 SS G_CDS: -0.08 Total: -56.10 kcal Atomic # 14 Polarization: 38.05 SS G_CDS: 1.90 Total: 39.95 kcal Total: -83.09 0.52 -82.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357307693.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.519 kcal (2) G-P(sol) polarization free energy of solvation -83.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds