Wall clock time and date at job start Mon Mar 30 2020 05:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42897 * 114.00193 * 2 1 4 4 H 1.09005 * 109.38071 * 30.20492 * 3 2 1 5 5 C 1.52891 * 109.38372 * 270.52550 * 3 2 1 6 6 C 1.52458 * 110.08537 * 181.28948 * 5 3 2 7 7 C 1.52695 * 109.27820 * 59.09535 * 6 5 3 8 8 H 1.09001 * 108.83918 * 58.21787 * 7 6 5 9 9 O 1.42559 * 111.40644 * 178.82192 * 7 6 5 10 10 C 1.43172 * 113.52582 * 183.81192 * 9 7 6 11 11 C 1.53184 * 109.82769 * 298.46526 * 10 9 7 12 12 N 1.47381 * 108.86999 * 51.03248 * 11 10 9 13 13 C 1.34781 * 121.36754 * 129.85461 * 12 11 10 14 14 O 1.21690 * 120.00394 * 174.70390 * 13 12 11 15 15 C 1.46378 * 119.99873 * 354.69876 * 13 12 11 16 16 H 1.08000 * 119.99596 * 5.16278 * 15 13 12 17 17 C 1.40044 * 119.99997 * 185.15586 * 15 13 12 18 18 N 1.30666 * 120.00198 * 5.08590 * 17 15 13 19 19 Si 1.86805 * 119.99972 * 185.08082 * 17 15 13 20 20 H 1.48493 * 109.47180 * 85.00390 * 19 17 15 21 21 H 1.48502 * 109.47067 * 205.00410 * 19 17 15 22 22 H 1.48502 * 109.46887 * 325.00039 * 19 17 15 23 23 C 1.46836 * 117.26759 * 309.82910 * 12 11 10 24 24 H 1.09005 * 109.57032 * 292.73091 * 23 12 11 25 25 C 1.52719 * 111.19722 * 171.46794 * 23 12 11 26 26 H 1.09003 * 109.47149 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47472 * 300.00072 * 1 2 3 28 28 H 1.08999 * 109.47172 * 60.00605 * 1 2 3 29 29 H 1.08999 * 109.38186 * 301.27775 * 5 3 2 30 30 H 1.08997 * 109.38235 * 60.94979 * 5 3 2 31 31 H 1.09003 * 109.09785 * 299.32296 * 6 5 3 32 32 H 1.09005 * 109.65258 * 179.20157 * 6 5 3 33 33 H 1.09001 * 109.41567 * 178.35935 * 10 9 7 34 34 H 1.08996 * 109.35772 * 58.53706 * 10 9 7 35 35 H 1.08998 * 109.57136 * 291.21008 * 11 10 9 36 36 H 1.09006 * 109.56583 * 170.84456 * 11 10 9 37 37 H 0.97001 * 120.00378 * 179.97438 * 18 17 15 38 38 H 1.09006 * 109.56966 * 299.63397 * 25 23 12 39 39 H 1.09002 * 109.57616 * 59.87625 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3455 1.9973 0.5173 5 6 2.2046 1.7743 -1.4422 6 6 2.8538 3.1536 -1.4613 7 6 4.2022 3.0860 -0.7480 8 1 4.8278 2.3462 -1.2474 9 8 4.8627 4.3493 -0.7630 10 6 6.1707 4.3173 -0.1818 11 6 6.0748 3.9083 1.2913 12 7 5.2735 2.6755 1.3926 13 6 5.7143 1.6073 2.0863 14 8 4.9931 0.6384 2.2350 15 6 7.0605 1.6125 2.6610 16 1 7.6696 2.5023 2.6013 17 6 7.5586 0.4637 3.2881 18 7 6.8629 -0.6423 3.2737 19 14 9.2177 0.5123 4.1453 20 1 9.0448 1.0203 5.5299 21 1 9.7930 -0.8561 4.1882 22 1 10.1342 1.4113 3.3989 23 6 3.9751 2.6589 0.7071 24 1 3.2971 3.3611 1.1922 25 6 3.3603 1.2610 0.7226 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 2.8470 1.0685 -1.9686 30 1 1.2365 1.8213 -1.9408 31 1 2.2036 3.8610 -0.9465 32 1 3.0019 3.4749 -2.4923 33 1 6.6239 5.3060 -0.2544 34 1 6.7870 3.5961 -0.7185 35 1 5.5943 4.7039 1.8606 36 1 7.0748 3.7272 1.6858 37 1 7.2081 -1.4382 3.7078 38 1 4.0250 0.5641 0.2119 39 1 3.2144 0.9376 1.7533 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357650835.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:14 Heat of formation + Delta-G solvation = -116.813987 kcal Electronic energy + Delta-G solvation = -22206.884902 eV Core-core repulsion = 18921.971215 eV Total energy + Delta-G solvation = -3284.913687 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.99252 -37.91548 -36.84564 -35.05356 -33.45743 -32.52164 -30.13533 -29.44607 -27.31879 -26.08077 -25.82501 -22.80155 -22.46006 -21.14338 -19.95913 -19.09303 -16.64484 -16.31944 -16.14756 -15.62287 -15.31519 -14.93711 -14.78268 -14.37033 -14.24993 -13.77655 -13.75653 -13.07435 -12.88227 -12.37877 -12.16105 -11.88782 -11.66138 -11.60269 -11.25986 -11.05272 -11.01091 -10.88907 -10.71052 -10.44784 -10.29758 -10.16324 -10.07747 -9.98886 -9.47060 -9.26226 -8.87815 -7.26510 -7.19050 -6.20664 -4.69345 3.11456 3.18242 3.20215 3.87741 3.97818 4.13000 4.43610 4.51354 4.96942 5.12856 5.30760 5.34967 5.42878 5.48253 5.53309 5.54851 5.57376 5.68584 5.72754 5.76956 5.81725 5.88308 5.94421 6.00235 6.13653 6.22528 6.29501 6.34733 6.39029 6.48380 6.96909 7.23458 7.39875 7.47391 7.56765 7.60292 8.08281 8.28401 8.97728 9.36339 10.52415 10.70748 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.019845 B = 0.006846 C = 0.005272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.627843 B = 4089.261330 C = 5309.392491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.377 6.377 3 C 0.081 3.919 4 H 0.053 0.947 5 C -0.138 4.138 6 C -0.102 4.102 7 C 0.076 3.924 8 H 0.058 0.942 9 O -0.385 6.385 10 C 0.048 3.952 11 C 0.088 3.912 12 N -0.642 5.642 13 C 0.561 3.439 14 O -0.563 6.563 15 C -0.546 4.546 16 H 0.071 0.929 17 C 0.090 3.910 18 N -0.764 5.764 19 Si 0.906 3.094 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.266 1.266 23 C 0.135 3.865 24 H 0.053 0.947 25 C -0.098 4.098 26 H 0.081 0.919 27 H 0.038 0.962 28 H 0.035 0.965 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.052 0.948 35 H 0.050 0.950 36 H 0.102 0.898 37 H 0.270 0.730 38 H 0.075 0.925 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.235 6.964 -7.180 11.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.296 6.296 3 C 0.023 3.977 4 H 0.071 0.929 5 C -0.176 4.176 6 C -0.140 4.140 7 C 0.017 3.983 8 H 0.076 0.924 9 O -0.304 6.304 10 C -0.030 4.030 11 C -0.036 4.036 12 N -0.381 5.381 13 C 0.368 3.632 14 O -0.446 6.446 15 C -0.583 4.583 16 H 0.089 0.911 17 C -0.131 4.131 18 N -0.393 5.393 19 Si 0.730 3.270 20 H -0.196 1.196 21 H -0.205 1.205 22 H -0.190 1.190 23 C 0.030 3.970 24 H 0.071 0.929 25 C -0.135 4.135 26 H 0.099 0.901 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.112 0.888 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.120 0.880 37 H 0.080 0.920 38 H 0.094 0.906 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.606 6.191 -7.099 11.505 hybrid contribution 0.810 0.210 0.440 0.945 sum -5.797 6.401 -6.659 10.905 Atomic orbital electron populations 1.22734 0.82225 1.02212 0.99390 1.87985 1.18602 1.28073 1.94919 1.22492 0.96759 0.83836 0.94626 0.92864 1.21884 1.00797 0.96579 0.98298 1.21199 0.94879 0.97163 1.00758 1.22461 0.93816 0.85733 0.96315 0.92389 1.87792 1.30084 1.31312 1.81201 1.23014 0.84174 1.01548 0.94243 1.22100 0.98502 0.87803 0.95203 1.48329 1.17851 1.15556 1.56359 1.18224 0.87857 0.79842 0.77318 1.90581 1.57145 1.34165 1.62685 1.20946 0.98993 0.99247 1.39073 0.91076 1.25693 0.98103 0.94721 0.94547 1.69982 1.35925 1.00424 1.32938 0.86417 0.82278 0.78063 0.80199 1.19619 1.20491 1.18982 1.21265 0.87227 0.97149 0.91361 0.92893 1.21988 0.92294 0.95319 1.03944 0.90073 0.94335 0.94646 0.91010 0.91808 0.91359 0.91027 0.88836 0.92994 0.93200 0.88017 0.91961 0.90631 0.87071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.81 101.05 1.09 1.49 16 2 O -0.38 -6.66 10.34 -35.23 -0.36 -7.03 16 3 C 0.08 1.37 2.61 -26.69 -0.07 1.30 16 4 H 0.05 0.82 7.78 -51.93 -0.40 0.42 16 5 C -0.14 -1.97 5.48 -27.06 -0.15 -2.12 16 6 C -0.10 -1.44 5.64 -27.16 -0.15 -1.60 16 7 C 0.08 1.32 2.50 -26.71 -0.07 1.26 16 8 H 0.06 1.10 8.13 -51.93 -0.42 0.68 16 9 O -0.38 -6.66 10.51 -35.23 -0.37 -7.03 16 10 C 0.05 0.77 6.95 37.25 0.26 1.03 16 11 C 0.09 1.65 6.55 -3.46 -0.02 1.63 16 12 N -0.64 -14.62 3.02 -166.64 -0.50 -15.12 16 13 C 0.56 15.51 7.51 -12.98 -0.10 15.41 16 14 O -0.56 -17.22 11.05 5.20 0.06 -17.16 16 15 C -0.55 -14.91 8.89 -35.63 -0.32 -15.23 16 16 H 0.07 1.77 5.73 -52.49 -0.30 1.47 16 17 C 0.09 2.44 5.49 -17.37 -0.10 2.34 16 18 N -0.76 -22.35 11.87 55.55 0.66 -21.69 16 19 Si 0.91 19.70 29.56 -169.99 -5.03 14.67 16 20 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 21 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 22 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 23 C 0.14 2.72 2.82 -67.71 -0.19 2.53 16 24 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 25 C -0.10 -2.09 3.39 -26.78 -0.09 -2.18 16 26 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 27 H 0.04 0.46 8.08 -51.93 -0.42 0.04 16 28 H 0.03 0.38 7.83 -51.93 -0.41 -0.02 16 29 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.06 0.77 7.83 -51.93 -0.41 0.36 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.10 1.92 5.45 -51.93 -0.28 1.63 16 37 H 0.27 7.20 8.29 -40.82 -0.34 6.86 16 38 H 0.08 1.84 7.62 -51.93 -0.40 1.44 16 39 H 0.11 2.79 6.15 -51.93 -0.32 2.47 16 LS Contribution 304.35 15.07 4.59 4.59 Total: -1.00 -32.57 304.35 -6.73 -39.30 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -5.87 Total: 3.60 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: 0.10 Total: 5.87 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: 0.16 Total: -36.82 kcal Atomic # 8 Polarization: -30.54 SS G_CDS: -0.68 Total: -31.22 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.03 Total: 14.67 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.57 -6.73 -39.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357650835.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.512 kcal (2) G-P(sol) polarization free energy of solvation -32.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds