Wall clock time and date at job start Mon Mar 30 2020 05:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42897 * 114.00193 * 2 1 4 4 H 1.09005 * 109.38071 * 30.20492 * 3 2 1 5 5 C 1.52891 * 109.38372 * 270.52550 * 3 2 1 6 6 C 1.52458 * 110.08537 * 181.28948 * 5 3 2 7 7 C 1.52695 * 109.27820 * 59.09535 * 6 5 3 8 8 H 1.09001 * 108.83918 * 58.21787 * 7 6 5 9 9 O 1.42559 * 111.40644 * 178.82192 * 7 6 5 10 10 C 1.43172 * 113.52582 * 183.81192 * 9 7 6 11 11 C 1.53184 * 109.82769 * 298.46526 * 10 9 7 12 12 N 1.47381 * 108.86999 * 51.03248 * 11 10 9 13 13 C 1.34781 * 121.36754 * 129.85461 * 12 11 10 14 14 O 1.21690 * 120.00394 * 174.70390 * 13 12 11 15 15 C 1.46378 * 119.99873 * 354.69876 * 13 12 11 16 16 H 1.08000 * 119.99596 * 5.16278 * 15 13 12 17 17 C 1.40044 * 119.99997 * 185.15586 * 15 13 12 18 18 N 1.30666 * 120.00198 * 5.08590 * 17 15 13 19 19 Si 1.86805 * 119.99972 * 185.08082 * 17 15 13 20 20 H 1.48493 * 109.47180 * 85.00390 * 19 17 15 21 21 H 1.48502 * 109.47067 * 205.00410 * 19 17 15 22 22 H 1.48502 * 109.46887 * 325.00039 * 19 17 15 23 23 C 1.46836 * 117.26759 * 309.82910 * 12 11 10 24 24 H 1.09005 * 109.57032 * 292.73091 * 23 12 11 25 25 C 1.52719 * 111.19722 * 171.46794 * 23 12 11 26 26 H 1.09003 * 109.47149 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47472 * 300.00072 * 1 2 3 28 28 H 1.08999 * 109.47172 * 60.00605 * 1 2 3 29 29 H 1.08999 * 109.38186 * 301.27775 * 5 3 2 30 30 H 1.08997 * 109.38235 * 60.94979 * 5 3 2 31 31 H 1.09003 * 109.09785 * 299.32296 * 6 5 3 32 32 H 1.09005 * 109.65258 * 179.20157 * 6 5 3 33 33 H 1.09001 * 109.41567 * 178.35935 * 10 9 7 34 34 H 1.08996 * 109.35772 * 58.53706 * 10 9 7 35 35 H 1.08998 * 109.57136 * 291.21008 * 11 10 9 36 36 H 1.09006 * 109.56583 * 170.84456 * 11 10 9 37 37 H 0.97001 * 120.00378 * 179.97438 * 18 17 15 38 38 H 1.09006 * 109.56966 * 299.63397 * 25 23 12 39 39 H 1.09002 * 109.57616 * 59.87625 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3455 1.9973 0.5173 5 6 2.2046 1.7743 -1.4422 6 6 2.8538 3.1536 -1.4613 7 6 4.2022 3.0860 -0.7480 8 1 4.8278 2.3462 -1.2474 9 8 4.8627 4.3493 -0.7630 10 6 6.1707 4.3173 -0.1818 11 6 6.0748 3.9083 1.2913 12 7 5.2735 2.6755 1.3926 13 6 5.7143 1.6073 2.0863 14 8 4.9931 0.6384 2.2350 15 6 7.0605 1.6125 2.6610 16 1 7.6696 2.5023 2.6013 17 6 7.5586 0.4637 3.2881 18 7 6.8629 -0.6423 3.2737 19 14 9.2177 0.5123 4.1453 20 1 9.0448 1.0203 5.5299 21 1 9.7930 -0.8561 4.1882 22 1 10.1342 1.4113 3.3989 23 6 3.9751 2.6589 0.7071 24 1 3.2971 3.3611 1.1922 25 6 3.3603 1.2610 0.7226 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 2.8470 1.0685 -1.9686 30 1 1.2365 1.8213 -1.9408 31 1 2.2036 3.8610 -0.9465 32 1 3.0019 3.4749 -2.4923 33 1 6.6239 5.3060 -0.2544 34 1 6.7870 3.5961 -0.7185 35 1 5.5943 4.7039 1.8606 36 1 7.0748 3.7272 1.6858 37 1 7.2081 -1.4382 3.7078 38 1 4.0250 0.5641 0.2119 39 1 3.2144 0.9376 1.7533 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357650835.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:13 Heat of formation + Delta-G solvation = -140.876507 kcal Electronic energy + Delta-G solvation = -22207.928332 eV Core-core repulsion = 18921.971215 eV Total energy + Delta-G solvation = -3285.957116 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.53004 -39.29767 -38.67503 -36.39710 -35.26394 -34.59032 -31.60815 -30.84867 -29.03394 -27.67811 -27.21243 -24.24328 -24.02342 -22.69447 -21.32786 -20.91558 -18.48740 -17.82251 -17.66378 -17.28167 -16.66674 -16.45181 -16.25855 -15.93592 -15.75354 -15.40060 -15.22027 -14.49704 -14.33292 -13.93051 -13.66415 -13.52015 -13.16738 -13.07991 -13.02537 -12.77011 -12.40867 -12.37295 -12.13414 -12.03016 -11.91411 -11.78412 -11.55780 -11.49708 -11.01891 -10.90251 -10.53781 -9.30589 -9.01189 -8.25343 -6.84288 1.38621 1.40602 1.54329 2.20474 2.45231 2.57073 2.60260 3.01503 3.55334 3.65234 3.83411 3.95981 4.03470 4.08893 4.15774 4.26753 4.33741 4.39229 4.42915 4.45898 4.54582 4.56149 4.63606 4.82175 4.82818 4.89132 4.98992 5.01540 5.06132 5.15952 5.32161 5.36614 5.50921 5.67761 6.08720 6.16674 6.32142 6.37255 6.87554 7.39046 8.47334 8.66744 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.019845 B = 0.006846 C = 0.005272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.627843 B = 4089.261330 C = 5309.392491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.415 6.415 3 C 0.087 3.913 4 H 0.073 0.927 5 C -0.129 4.129 6 C -0.093 4.093 7 C 0.084 3.916 8 H 0.036 0.964 9 O -0.380 6.380 10 C 0.052 3.948 11 C 0.082 3.918 12 N -0.650 5.650 13 C 0.542 3.458 14 O -0.608 6.608 15 C -0.572 4.572 16 H 0.093 0.907 17 C 0.031 3.969 18 N -0.820 5.820 19 Si 0.994 3.006 20 H -0.263 1.263 21 H -0.276 1.276 22 H -0.246 1.246 23 C 0.129 3.871 24 H 0.063 0.937 25 C -0.084 4.084 26 H 0.093 0.907 27 H 0.044 0.956 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.138 0.862 34 H 0.043 0.957 35 H 0.066 0.934 36 H 0.097 0.903 37 H 0.273 0.727 38 H 0.028 0.972 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.257 9.525 -8.387 14.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.334 6.334 3 C 0.029 3.971 4 H 0.091 0.909 5 C -0.166 4.166 6 C -0.131 4.131 7 C 0.025 3.975 8 H 0.054 0.946 9 O -0.299 6.299 10 C -0.025 4.025 11 C -0.041 4.041 12 N -0.388 5.388 13 C 0.348 3.652 14 O -0.495 6.495 15 C -0.608 4.608 16 H 0.110 0.890 17 C -0.184 4.184 18 N -0.450 5.450 19 Si 0.813 3.187 20 H -0.188 1.188 21 H -0.201 1.201 22 H -0.169 1.169 23 C 0.025 3.975 24 H 0.081 0.919 25 C -0.122 4.122 26 H 0.111 0.889 27 H 0.063 0.937 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.119 0.881 31 H 0.105 0.895 32 H 0.116 0.884 33 H 0.156 0.844 34 H 0.062 0.938 35 H 0.085 0.915 36 H 0.115 0.885 37 H 0.083 0.917 38 H 0.047 0.953 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.642 8.814 -8.340 13.833 hybrid contribution 0.742 -0.588 0.832 1.260 sum -5.900 8.226 -7.508 12.604 Atomic orbital electron populations 1.22998 0.79524 1.03684 1.01000 1.87938 1.21636 1.28622 1.95232 1.22354 0.94165 0.84298 0.96250 0.90940 1.21823 1.02465 0.96279 0.96066 1.21221 0.92661 0.97317 1.01928 1.22389 0.95614 0.85458 0.94061 0.94612 1.87807 1.30448 1.30689 1.80950 1.23122 0.83880 1.03696 0.91825 1.22350 0.97811 0.86291 0.97670 1.48241 1.19216 1.15817 1.55545 1.18627 0.88265 0.80522 0.77766 1.90574 1.58310 1.36292 1.64290 1.21488 0.99426 1.00425 1.39445 0.88965 1.26933 1.02821 0.93809 0.94815 1.70168 1.38759 1.01574 1.34491 0.85092 0.76252 0.78488 0.78862 1.18751 1.20078 1.16945 1.21465 0.86213 0.96460 0.93381 0.91899 1.21590 0.94504 0.95063 1.01071 0.88873 0.93699 0.91899 0.92437 0.88120 0.89533 0.88413 0.84422 0.93828 0.91535 0.88497 0.91682 0.95260 0.92034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 10.81 113.37 1.23 1.80 16 2 O -0.41 -14.83 10.34 -148.98 -1.54 -16.37 16 3 C 0.09 2.94 2.61 30.62 0.08 3.02 16 4 H 0.07 2.14 7.78 -2.38 -0.02 2.12 16 5 C -0.13 -3.41 5.48 30.38 0.17 -3.24 16 6 C -0.09 -2.35 5.64 30.31 0.17 -2.18 16 7 C 0.08 2.85 2.50 30.61 0.08 2.92 16 8 H 0.04 1.37 8.13 -2.39 -0.02 1.35 16 9 O -0.38 -12.14 10.51 -148.98 -1.57 -13.70 16 10 C 0.05 1.55 6.95 72.04 0.50 2.05 16 11 C 0.08 2.98 6.55 86.27 0.56 3.55 16 12 N -0.65 -30.52 3.02 -799.35 -2.41 -32.94 16 13 C 0.54 31.62 7.51 86.36 0.65 32.27 16 14 O -0.61 -40.18 11.05 -4.32 -0.05 -40.23 16 15 C -0.57 -32.14 8.89 24.83 0.22 -31.92 16 16 H 0.09 4.60 5.73 -2.91 -0.02 4.58 16 17 C 0.03 1.75 5.49 85.30 0.47 2.22 16 18 N -0.82 -50.46 11.87 21.83 0.26 -50.20 16 19 Si 0.99 40.88 29.56 68.60 2.03 42.90 16 20 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 21 H -0.28 -11.05 7.11 99.48 0.71 -10.35 16 22 H -0.25 -9.27 7.11 99.48 0.71 -8.57 16 23 C 0.13 5.32 2.82 44.95 0.13 5.44 16 24 H 0.06 2.45 8.14 -2.38 -0.02 2.43 16 25 C -0.08 -3.83 3.39 30.57 0.10 -3.73 16 26 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.04 1.01 8.08 -2.39 -0.02 0.99 16 28 H 0.06 1.16 7.83 -2.39 -0.02 1.14 16 29 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.10 2.00 7.83 -2.39 -0.02 1.98 16 31 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 33 H 0.14 2.95 8.14 -2.39 -0.02 2.93 16 34 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.10 3.59 5.45 -2.38 -0.01 3.57 16 37 H 0.27 15.34 8.29 -92.71 -0.77 14.57 16 38 H 0.03 1.54 7.62 -2.38 -0.02 1.52 16 39 H 0.06 3.37 6.15 -2.39 -0.01 3.36 16 Total: -1.00 -77.38 304.35 2.11 -75.26 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: 1.04 Total: 23.07 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: 4.35 Total: 12.20 kcal Atomic # 7 Polarization: -80.99 SS G_CDS: -2.15 Total: -83.14 kcal Atomic # 8 Polarization: -67.15 SS G_CDS: -3.15 Total: -70.30 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.90 kcal Total: -77.38 2.11 -75.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357650835.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.613 kcal (2) G-P(sol) polarization free energy of solvation -77.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds