Wall clock time and date at job start Mon Mar 30 2020 05:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42903 * 114.00310 * 2 1 4 4 H 1.09004 * 109.29521 * 29.73234 * 3 2 1 5 5 C 1.52881 * 109.38406 * 270.00205 * 3 2 1 6 6 C 1.53202 * 109.99319 * 298.54867 * 5 3 2 7 7 C 1.52689 * 108.88681 * 300.62310 * 6 5 3 8 8 H 1.09000 * 109.31594 * 302.45184 * 7 6 5 9 9 O 1.42561 * 111.40733 * 181.53909 * 7 6 5 10 10 C 1.43183 * 113.52810 * 176.79345 * 9 7 6 11 11 C 1.53181 * 109.82826 * 61.53676 * 10 9 7 12 12 N 1.47391 * 108.86768 * 308.96213 * 11 10 9 13 13 C 1.34767 * 121.36210 * 230.15185 * 12 11 10 14 14 O 1.21696 * 119.99987 * 174.55110 * 13 12 11 15 15 C 1.46375 * 120.00359 * 354.54666 * 13 12 11 16 16 H 1.07998 * 120.00120 * 5.00524 * 15 13 12 17 17 C 1.40053 * 120.00171 * 185.00955 * 15 13 12 18 18 N 1.30671 * 119.99738 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 119.99976 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47293 * 59.99689 * 19 17 15 21 21 H 1.48498 * 109.47119 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.46902 * 299.99597 * 19 17 15 23 23 C 1.46838 * 117.27074 * 50.17274 * 12 11 10 24 24 H 1.08997 * 109.86926 * 67.44701 * 23 12 11 25 25 C 1.52843 * 110.43579 * 189.07486 * 23 12 11 26 26 H 1.09003 * 109.47142 * 60.00006 * 1 2 3 27 27 H 1.08998 * 109.47414 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47202 * 300.00463 * 1 2 3 29 29 H 1.09002 * 109.38132 * 178.39280 * 5 3 2 30 30 H 1.08992 * 109.38670 * 58.70874 * 5 3 2 31 31 H 1.09005 * 109.56327 * 180.80722 * 6 5 3 32 32 H 1.09004 * 109.57252 * 60.44955 * 6 5 3 33 33 H 1.09008 * 109.41127 * 181.64187 * 10 9 7 34 34 H 1.09000 * 109.41249 * 301.42350 * 10 9 7 35 35 H 1.09002 * 109.57143 * 189.15026 * 11 10 9 36 36 H 1.08993 * 109.67273 * 68.83687 * 11 10 9 37 37 H 0.97005 * 119.99798 * 180.02562 * 18 17 15 38 38 H 1.08995 * 110.05608 * 60.76570 * 25 23 12 39 39 H 1.08996 * 109.66938 * 300.14865 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3407 1.9979 0.5102 5 6 2.2166 1.7690 -1.4422 6 6 3.1786 0.8205 -2.1647 7 6 4.5131 0.8106 -1.4229 8 1 4.9057 1.8263 -1.3736 9 8 5.4631 -0.0310 -2.0722 10 6 6.7550 -0.0172 -1.4549 11 6 6.6488 -0.5318 -0.0161 12 7 5.5753 0.2043 0.6755 13 6 5.7792 0.7753 1.8790 14 8 4.9086 1.4603 2.3828 15 6 7.0477 0.5715 2.5805 16 1 7.8500 0.0316 2.0996 17 6 7.2210 1.0765 3.8752 18 7 6.2504 1.7301 4.4569 19 14 8.8400 0.8170 4.7700 20 1 9.9410 1.4394 3.9919 21 1 8.7687 1.4440 6.1143 22 1 9.0976 -0.6383 4.9152 23 6 4.2746 0.2895 -0.0005 24 1 3.8152 -0.6979 -0.0457 25 6 3.3542 1.2637 0.7343 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 2.6335 2.7762 -1.4422 30 1 1.2579 1.7759 -1.9606 31 1 3.3318 1.1654 -3.1873 32 1 2.7596 -0.1857 -2.1758 33 1 7.4331 -0.6573 -2.0195 34 1 7.1422 1.0017 -1.4476 35 1 7.5946 -0.3690 0.5007 36 1 6.4153 -1.5964 -0.0234 37 1 6.3705 2.0802 5.3535 38 1 3.7959 2.2600 0.7442 39 1 3.2005 0.9220 1.7579 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357650842.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:20 Heat of formation + Delta-G solvation = -114.824137 kcal Electronic energy + Delta-G solvation = -22374.641493 eV Core-core repulsion = 19089.814092 eV Total energy + Delta-G solvation = -3284.827401 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.97732 -37.89705 -36.80106 -34.70615 -33.39391 -32.49639 -30.02253 -29.49431 -27.25913 -26.23110 -25.74893 -22.85298 -22.38974 -21.13180 -19.67278 -19.07016 -16.57849 -16.16403 -16.04012 -15.54937 -15.43506 -15.09100 -14.71669 -14.24465 -14.19665 -13.76839 -13.54097 -12.94140 -12.87147 -12.31950 -12.05942 -11.78527 -11.74637 -11.53538 -11.23576 -11.13093 -10.96734 -10.87545 -10.73238 -10.41607 -10.30377 -10.10559 -9.95794 -9.83729 -9.39744 -9.26125 -8.86389 -7.27850 -7.07270 -6.18078 -4.67814 3.13023 3.18456 3.19653 4.00679 4.05620 4.17692 4.43590 4.52960 5.07505 5.11422 5.36357 5.41283 5.44999 5.52305 5.56663 5.60101 5.70943 5.72478 5.75064 5.78337 5.89649 5.91813 5.99902 6.09978 6.25532 6.29607 6.36234 6.42216 6.49034 6.56676 7.02394 7.27950 7.41111 7.52469 7.55149 7.65485 8.11183 8.33120 8.98977 9.40650 10.53818 10.72402 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022843 B = 0.006591 C = 0.005454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.446185 B = 4247.295783 C = 5132.771742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.378 6.378 3 C 0.074 3.926 4 H 0.058 0.942 5 C -0.136 4.136 6 C -0.099 4.099 7 C 0.077 3.923 8 H 0.053 0.947 9 O -0.385 6.385 10 C 0.048 3.952 11 C 0.089 3.911 12 N -0.643 5.643 13 C 0.562 3.438 14 O -0.568 6.568 15 C -0.545 4.545 16 H 0.070 0.930 17 C 0.089 3.911 18 N -0.767 5.767 19 Si 0.906 3.094 20 H -0.268 1.268 21 H -0.280 1.280 22 H -0.268 1.268 23 C 0.135 3.865 24 H 0.065 0.935 25 C -0.089 4.089 26 H 0.034 0.966 27 H 0.079 0.921 28 H 0.038 0.962 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.049 0.951 35 H 0.098 0.902 36 H 0.050 0.950 37 H 0.269 0.731 38 H 0.083 0.917 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.989 -1.566 -10.068 11.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.297 6.297 3 C 0.016 3.984 4 H 0.076 0.924 5 C -0.174 4.174 6 C -0.137 4.137 7 C 0.019 3.981 8 H 0.071 0.929 9 O -0.304 6.304 10 C -0.029 4.029 11 C -0.036 4.036 12 N -0.382 5.382 13 C 0.369 3.631 14 O -0.451 6.451 15 C -0.582 4.582 16 H 0.088 0.912 17 C -0.131 4.131 18 N -0.395 5.395 19 Si 0.730 3.270 20 H -0.193 1.193 21 H -0.206 1.206 22 H -0.193 1.193 23 C 0.030 3.970 24 H 0.083 0.917 25 C -0.126 4.126 26 H 0.053 0.947 27 H 0.098 0.902 28 H 0.056 0.944 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.111 0.889 34 H 0.067 0.933 35 H 0.116 0.884 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.101 0.899 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.464 -1.347 -9.746 11.254 hybrid contribution 0.770 0.165 0.540 0.955 sum -4.694 -1.182 -9.206 10.401 Atomic orbital electron populations 1.22719 0.82450 1.02070 0.99360 1.87977 1.18439 1.28335 1.94932 1.22686 0.96975 0.84079 0.94661 0.92369 1.21994 0.99192 0.99412 0.96789 1.21287 0.93190 1.01016 0.98209 1.22463 0.89403 0.93262 0.93007 0.92912 1.87802 1.20880 1.67630 1.54078 1.22996 0.84716 1.00877 0.94342 1.22062 0.93977 0.95504 0.92014 1.48327 1.09639 1.58959 1.21295 1.18160 0.88719 0.78559 0.77667 1.90571 1.45900 1.42271 1.66378 1.20954 0.98980 1.38066 1.00164 0.91172 1.25697 0.97126 0.92992 0.97252 1.69989 1.31089 1.25847 1.12616 0.86462 0.82565 0.79257 0.78671 1.19285 1.20551 1.19260 1.21389 0.85876 0.98986 0.90731 0.91698 1.22121 0.89920 1.00479 1.00070 0.94717 0.90236 0.94377 0.91088 0.91888 0.91850 0.90633 0.88929 0.93259 0.88362 0.93135 0.92039 0.89892 0.87815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.81 101.05 1.09 1.47 16 2 O -0.38 -6.28 9.01 -35.23 -0.32 -6.60 16 3 C 0.07 1.22 2.89 -26.69 -0.08 1.14 16 4 H 0.06 0.89 7.77 -51.93 -0.40 0.49 16 5 C -0.14 -1.91 5.59 -26.69 -0.15 -2.06 16 6 C -0.10 -1.50 5.53 -26.79 -0.15 -1.65 16 7 C 0.08 1.41 2.51 -26.71 -0.07 1.34 16 8 H 0.05 1.00 8.13 -51.93 -0.42 0.58 16 9 O -0.38 -6.99 10.51 -35.23 -0.37 -7.36 16 10 C 0.05 0.80 6.95 37.25 0.26 1.06 16 11 C 0.09 1.72 6.49 -3.46 -0.02 1.70 16 12 N -0.64 -14.98 3.02 -166.57 -0.50 -15.49 16 13 C 0.56 15.62 7.57 -12.99 -0.10 15.52 16 14 O -0.57 -17.16 10.77 5.19 0.06 -17.11 16 15 C -0.55 -14.99 8.87 -35.63 -0.32 -15.31 16 16 H 0.07 1.76 5.80 -52.49 -0.30 1.46 16 17 C 0.09 2.43 5.50 -17.37 -0.10 2.33 16 18 N -0.77 -22.33 11.84 55.55 0.66 -21.67 16 19 Si 0.91 19.76 29.56 -169.99 -5.02 14.74 16 20 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 21 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 22 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 23 C 0.13 2.82 2.70 -67.64 -0.18 2.64 16 24 H 0.07 1.42 7.59 -51.93 -0.39 1.03 16 25 C -0.09 -1.86 3.44 -26.71 -0.09 -1.95 16 26 H 0.03 0.37 7.83 -51.93 -0.41 -0.04 16 27 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.04 0.45 8.08 -51.93 -0.42 0.03 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.06 0.75 7.83 -51.93 -0.41 0.35 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 1.19 7.77 -51.93 -0.40 0.79 16 33 H 0.09 1.24 8.14 -51.92 -0.42 0.82 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.10 1.90 5.56 -51.93 -0.29 1.61 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.27 7.16 8.29 -40.82 -0.34 6.82 16 38 H 0.08 1.88 7.34 -51.93 -0.38 1.50 16 39 H 0.10 2.59 6.38 -51.93 -0.33 2.25 16 LS Contribution 302.11 15.07 4.55 4.55 Total: -1.00 -32.20 302.11 -6.68 -38.88 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -5.83 Total: 3.81 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: 0.10 Total: 6.25 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: 0.16 Total: -37.16 kcal Atomic # 8 Polarization: -30.44 SS G_CDS: -0.63 Total: -31.07 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.20 -6.68 -38.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357650842.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.946 kcal (2) G-P(sol) polarization free energy of solvation -32.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds