Wall clock time and date at job start Mon Mar 30 2020 05:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42903 * 114.00310 * 2 1 4 4 H 1.09004 * 109.29521 * 29.73234 * 3 2 1 5 5 C 1.52881 * 109.38406 * 270.00205 * 3 2 1 6 6 C 1.53202 * 109.99319 * 298.54867 * 5 3 2 7 7 C 1.52689 * 108.88681 * 300.62310 * 6 5 3 8 8 H 1.09000 * 109.31594 * 302.45184 * 7 6 5 9 9 O 1.42561 * 111.40733 * 181.53909 * 7 6 5 10 10 C 1.43183 * 113.52810 * 176.79345 * 9 7 6 11 11 C 1.53181 * 109.82826 * 61.53676 * 10 9 7 12 12 N 1.47391 * 108.86768 * 308.96213 * 11 10 9 13 13 C 1.34767 * 121.36210 * 230.15185 * 12 11 10 14 14 O 1.21696 * 119.99987 * 174.55110 * 13 12 11 15 15 C 1.46375 * 120.00359 * 354.54666 * 13 12 11 16 16 H 1.07998 * 120.00120 * 5.00524 * 15 13 12 17 17 C 1.40053 * 120.00171 * 185.00955 * 15 13 12 18 18 N 1.30671 * 119.99738 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 119.99976 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47293 * 59.99689 * 19 17 15 21 21 H 1.48498 * 109.47119 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.46902 * 299.99597 * 19 17 15 23 23 C 1.46838 * 117.27074 * 50.17274 * 12 11 10 24 24 H 1.08997 * 109.86926 * 67.44701 * 23 12 11 25 25 C 1.52843 * 110.43579 * 189.07486 * 23 12 11 26 26 H 1.09003 * 109.47142 * 60.00006 * 1 2 3 27 27 H 1.08998 * 109.47414 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47202 * 300.00463 * 1 2 3 29 29 H 1.09002 * 109.38132 * 178.39280 * 5 3 2 30 30 H 1.08992 * 109.38670 * 58.70874 * 5 3 2 31 31 H 1.09005 * 109.56327 * 180.80722 * 6 5 3 32 32 H 1.09004 * 109.57252 * 60.44955 * 6 5 3 33 33 H 1.09008 * 109.41127 * 181.64187 * 10 9 7 34 34 H 1.09000 * 109.41249 * 301.42350 * 10 9 7 35 35 H 1.09002 * 109.57143 * 189.15026 * 11 10 9 36 36 H 1.08993 * 109.67273 * 68.83687 * 11 10 9 37 37 H 0.97005 * 119.99798 * 180.02562 * 18 17 15 38 38 H 1.08995 * 110.05608 * 60.76570 * 25 23 12 39 39 H 1.08996 * 109.66938 * 300.14865 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3407 1.9979 0.5102 5 6 2.2166 1.7690 -1.4422 6 6 3.1786 0.8205 -2.1647 7 6 4.5131 0.8106 -1.4229 8 1 4.9057 1.8263 -1.3736 9 8 5.4631 -0.0310 -2.0722 10 6 6.7550 -0.0172 -1.4549 11 6 6.6488 -0.5318 -0.0161 12 7 5.5753 0.2043 0.6755 13 6 5.7792 0.7753 1.8790 14 8 4.9086 1.4603 2.3828 15 6 7.0477 0.5715 2.5805 16 1 7.8500 0.0316 2.0996 17 6 7.2210 1.0765 3.8752 18 7 6.2504 1.7301 4.4569 19 14 8.8400 0.8170 4.7700 20 1 9.9410 1.4394 3.9919 21 1 8.7687 1.4440 6.1143 22 1 9.0976 -0.6383 4.9152 23 6 4.2746 0.2895 -0.0005 24 1 3.8152 -0.6979 -0.0457 25 6 3.3542 1.2637 0.7343 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 2.6335 2.7762 -1.4422 30 1 1.2579 1.7759 -1.9606 31 1 3.3318 1.1654 -3.1873 32 1 2.7596 -0.1857 -2.1758 33 1 7.4331 -0.6573 -2.0195 34 1 7.1422 1.0017 -1.4476 35 1 7.5946 -0.3690 0.5007 36 1 6.4153 -1.5964 -0.0234 37 1 6.3705 2.0802 5.3535 38 1 3.7959 2.2600 0.7442 39 1 3.2005 0.9220 1.7579 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357650842.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:20 Heat of formation + Delta-G solvation = -138.037312 kcal Electronic energy + Delta-G solvation = -22375.648092 eV Core-core repulsion = 19089.814092 eV Total energy + Delta-G solvation = -3285.834000 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.53524 -39.28992 -38.63679 -36.05502 -35.22648 -34.56381 -31.51267 -30.92085 -29.02882 -27.63614 -27.27149 -24.33324 -23.98148 -22.71319 -21.08022 -20.87224 -18.45273 -17.76406 -17.55127 -17.13701 -16.80950 -16.51112 -16.28219 -15.84260 -15.71248 -15.45614 -15.04541 -14.39223 -14.21534 -13.91597 -13.55004 -13.41615 -13.30071 -13.12003 -12.97922 -12.71174 -12.42650 -12.38610 -12.26811 -12.03761 -11.94569 -11.61536 -11.58423 -11.25180 -10.99072 -10.86072 -10.51859 -9.32192 -8.93386 -8.22861 -6.83361 1.39083 1.42019 1.53130 2.22012 2.46418 2.61655 2.78467 2.95041 3.59346 3.71269 3.83628 3.98937 4.04669 4.12297 4.27067 4.29460 4.36094 4.37747 4.47804 4.54946 4.58139 4.58730 4.76602 4.79996 4.86752 4.95246 5.00440 5.01107 5.10085 5.24183 5.35543 5.37888 5.51462 5.70257 6.10242 6.19400 6.35652 6.38311 6.88309 7.41460 8.47902 8.67370 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022843 B = 0.006591 C = 0.005454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.446185 B = 4247.295783 C = 5132.771742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.404 6.404 3 C 0.082 3.918 4 H 0.067 0.933 5 C -0.128 4.128 6 C -0.092 4.092 7 C 0.085 3.915 8 H 0.042 0.958 9 O -0.386 6.386 10 C 0.053 3.947 11 C 0.082 3.918 12 N -0.652 5.652 13 C 0.543 3.457 14 O -0.607 6.607 15 C -0.572 4.572 16 H 0.089 0.911 17 C 0.032 3.968 18 N -0.819 5.819 19 Si 0.993 3.007 20 H -0.254 1.254 21 H -0.275 1.275 22 H -0.256 1.256 23 C 0.132 3.868 24 H 0.053 0.947 25 C -0.077 4.077 26 H 0.060 0.940 27 H 0.094 0.906 28 H 0.039 0.961 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.135 0.865 34 H 0.047 0.953 35 H 0.096 0.904 36 H 0.059 0.941 37 H 0.273 0.727 38 H 0.055 0.945 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.400 -2.162 -12.121 13.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.323 6.323 3 C 0.024 3.976 4 H 0.085 0.915 5 C -0.166 4.166 6 C -0.130 4.130 7 C 0.026 3.974 8 H 0.060 0.940 9 O -0.304 6.304 10 C -0.024 4.024 11 C -0.041 4.041 12 N -0.389 5.389 13 C 0.349 3.651 14 O -0.494 6.494 15 C -0.608 4.608 16 H 0.107 0.893 17 C -0.183 4.183 18 N -0.449 5.449 19 Si 0.812 3.188 20 H -0.178 1.178 21 H -0.200 1.200 22 H -0.180 1.180 23 C 0.028 3.972 24 H 0.071 0.929 25 C -0.115 4.115 26 H 0.078 0.922 27 H 0.112 0.888 28 H 0.057 0.943 29 H 0.096 0.904 30 H 0.116 0.884 31 H 0.108 0.892 32 H 0.091 0.909 33 H 0.153 0.847 34 H 0.065 0.935 35 H 0.114 0.886 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.879 -1.971 -11.855 12.971 hybrid contribution 0.516 0.288 1.177 1.318 sum -4.363 -1.684 -10.678 11.657 Atomic orbital electron populations 1.22959 0.80018 1.03552 1.00644 1.87925 1.21080 1.28151 1.95191 1.22456 0.94351 0.84665 0.96170 0.91478 1.21966 1.00749 0.99216 0.94664 1.21305 0.91211 1.01323 0.99173 1.22418 0.91190 0.92364 0.91396 0.93963 1.87813 1.21304 1.67495 1.53829 1.23106 0.84869 1.01622 0.92827 1.22302 0.92668 0.95656 0.93509 1.48280 1.11508 1.58432 1.20693 1.18560 0.88823 0.78717 0.78971 1.90558 1.46955 1.43879 1.67965 1.21475 0.99611 1.38675 1.01079 0.89283 1.26901 1.01496 0.91940 0.97949 1.70164 1.34092 1.27314 1.13307 0.85145 0.76856 0.79713 0.77075 1.17771 1.20030 1.18015 1.21501 0.84798 0.98346 0.92575 0.92948 1.21701 0.92982 0.98621 0.98215 0.92194 0.88763 0.94262 0.90448 0.88416 0.89171 0.90925 0.84684 0.93480 0.88574 0.92279 0.91683 0.92616 0.93012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.55 10.81 113.37 1.23 1.78 16 2 O -0.40 -13.22 9.01 -148.98 -1.34 -14.57 16 3 C 0.08 2.69 2.89 30.62 0.09 2.78 16 4 H 0.07 2.05 7.77 -2.38 -0.02 2.03 16 5 C -0.13 -3.30 5.59 30.62 0.17 -3.13 16 6 C -0.09 -2.57 5.53 30.56 0.17 -2.40 16 7 C 0.09 3.03 2.51 30.61 0.08 3.10 16 8 H 0.04 1.60 8.13 -2.39 -0.02 1.58 16 9 O -0.39 -13.21 10.51 -148.98 -1.57 -14.77 16 10 C 0.05 1.66 6.95 72.04 0.50 2.16 16 11 C 0.08 3.14 6.49 86.27 0.56 3.70 16 12 N -0.65 -31.39 3.02 -799.12 -2.41 -33.80 16 13 C 0.54 31.71 7.57 86.36 0.65 32.36 16 14 O -0.61 -39.32 10.77 -4.34 -0.05 -39.37 16 15 C -0.57 -32.31 8.87 24.83 0.22 -32.09 16 16 H 0.09 4.50 5.80 -2.91 -0.02 4.48 16 17 C 0.03 1.80 5.50 85.31 0.47 2.27 16 18 N -0.82 -49.74 11.84 21.84 0.26 -49.48 16 19 Si 0.99 40.81 29.56 68.60 2.03 42.84 16 20 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 21 H -0.28 -10.99 7.11 99.48 0.71 -10.28 16 22 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 23 C 0.13 5.69 2.70 44.99 0.12 5.82 16 24 H 0.05 2.37 7.59 -2.39 -0.02 2.36 16 25 C -0.08 -3.45 3.44 30.61 0.11 -3.34 16 26 H 0.06 1.07 7.83 -2.39 -0.02 1.05 16 27 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.04 0.88 8.08 -2.39 -0.02 0.86 16 29 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.10 1.91 7.83 -2.39 -0.02 1.89 16 31 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 32 H 0.07 2.10 7.77 -2.39 -0.02 2.08 16 33 H 0.14 3.11 8.14 -2.38 -0.02 3.09 16 34 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.10 3.68 5.56 -2.39 -0.01 3.67 16 36 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.27 15.13 8.29 -92.70 -0.77 14.36 16 38 H 0.06 2.72 7.34 -2.39 -0.02 2.70 16 39 H 0.05 2.81 6.38 -2.39 -0.02 2.80 16 Total: -1.00 -74.70 302.11 2.32 -72.38 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: 1.04 Total: 23.76 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: 4.36 Total: 13.01 kcal Atomic # 7 Polarization: -81.14 SS G_CDS: -2.15 Total: -83.29 kcal Atomic # 8 Polarization: -65.75 SS G_CDS: -2.96 Total: -68.71 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.84 kcal Total: -74.70 2.32 -72.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357650842.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.658 kcal (2) G-P(sol) polarization free energy of solvation -74.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds