Wall clock time and date at job start Mon Mar 30 2020 05:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34233 * 117.00014 * 2 1 4 4 O 1.20827 * 119.99612 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00203 * 180.02562 * 3 2 1 6 6 C 1.54841 * 107.09950 * 300.65172 * 5 3 2 7 7 N 1.48899 * 103.85053 * 221.20638 * 6 5 3 8 8 C 1.46899 * 110.99771 * 160.09958 * 7 6 5 9 9 C 1.50703 * 109.46692 * 170.00198 * 8 7 6 10 10 H 1.07999 * 120.00210 * 359.97438 * 9 8 7 11 11 C 1.37878 * 120.00001 * 179.97438 * 9 8 7 12 12 N 1.31522 * 119.99748 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00027 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47244 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.46975 * 119.99888 * 13 11 9 16 16 H 1.48499 * 109.46940 * 239.99650 * 13 11 9 17 17 C 1.48890 * 103.57824 * 40.91061 * 7 6 5 18 18 C 1.51508 * 106.99631 * 188.11988 * 5 3 2 19 19 H 1.08997 * 108.57037 * 358.65457 * 18 5 3 20 20 C 1.51177 * 115.89249 * 236.08763 * 18 5 3 21 21 O 1.42746 * 110.78888 * 330.39735 * 20 18 5 22 22 C 1.42830 * 111.52011 * 65.82631 * 21 20 18 23 23 C 1.49753 * 107.52742 * 59.30021 * 5 3 2 24 24 H 1.09003 * 109.47329 * 59.99638 * 1 2 3 25 25 H 1.08995 * 109.47044 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47398 * 299.99882 * 1 2 3 27 27 H 1.08997 * 110.55215 * 339.80037 * 6 5 3 28 28 H 1.09007 * 110.54778 * 102.46836 * 6 5 3 29 29 H 1.09003 * 109.47014 * 289.99556 * 8 7 6 30 30 H 1.08990 * 109.47489 * 50.00226 * 8 7 6 31 31 H 0.97002 * 119.99600 * 180.02562 * 12 11 9 32 32 H 1.09004 * 110.53710 * 77.99858 * 17 7 6 33 33 H 1.08998 * 110.54072 * 200.63281 * 17 7 6 34 34 H 1.09002 * 109.20844 * 210.07053 * 20 18 5 35 35 H 1.09005 * 109.20648 * 90.71818 * 20 18 5 36 36 H 1.09001 * 109.32102 * 53.88878 * 22 21 20 37 37 H 1.08993 * 109.32143 * 173.33114 * 22 21 20 38 38 H 1.08997 * 108.11685 * 1.20870 * 23 5 3 39 39 H 1.09006 * 108.11587 * 244.75112 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0609 0.5451 1.2723 7 7 5.1616 1.4124 1.7755 8 6 5.4332 1.1480 3.1948 9 6 6.6994 1.8552 3.6041 10 1 7.2478 2.4420 2.8820 11 6 7.1579 1.7532 4.9004 12 7 6.4898 1.0390 5.7798 13 14 8.7279 2.6291 5.4075 14 1 9.2861 3.3595 4.2413 15 1 8.4275 3.5918 6.4976 16 1 9.7183 1.6319 5.8868 17 6 4.6365 2.7920 1.5806 18 6 3.9335 2.7305 0.2042 19 1 3.0153 3.3142 0.2702 20 6 4.8208 3.3429 -0.8555 21 8 5.6698 2.3545 -1.4386 22 6 4.9188 1.3832 -2.1683 23 6 4.0543 0.5708 -1.2288 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 3.2608 0.4760 2.0091 28 1 4.4365 -0.4474 1.0226 29 1 4.6019 1.5132 3.7979 30 1 5.5501 0.0754 3.3487 31 1 6.8121 0.9675 6.6919 32 1 3.9221 3.0435 2.3646 33 1 5.4534 3.5133 1.5634 34 1 5.4350 4.1214 -0.4029 35 1 4.1979 3.7846 -1.6334 36 1 4.2838 1.8899 -2.8951 37 1 5.6038 0.7181 -2.6940 38 1 3.1858 0.2195 -1.7858 39 1 4.6245 -0.3034 -0.9143 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000373796712.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:42 Heat of formation + Delta-G solvation = -111.981029 kcal Electronic energy + Delta-G solvation = -22047.894682 eV Core-core repulsion = 18763.190567 eV Total energy + Delta-G solvation = -3284.704115 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.41158 -39.25441 -36.93967 -36.43107 -33.67857 -32.55159 -31.32627 -28.62001 -27.62083 -26.66392 -24.91108 -23.26558 -22.73338 -21.57121 -20.40553 -18.65085 -17.41623 -17.00433 -16.44959 -16.36732 -15.99016 -15.47262 -15.07079 -14.59210 -14.32549 -13.97975 -13.53082 -13.32742 -13.09335 -12.87509 -12.31770 -12.21157 -12.03517 -11.79660 -11.65243 -11.25912 -11.05785 -10.90311 -10.87148 -10.68202 -10.63261 -10.37232 -10.23668 -10.07114 -9.72549 -9.30238 -9.15718 -8.41308 -7.44795 -6.01027 -4.01857 2.18483 2.61935 3.33517 3.40791 3.46834 4.15493 4.36996 4.47719 4.58042 4.71678 4.96244 4.99523 5.04546 5.08250 5.19066 5.24848 5.35238 5.36932 5.39979 5.57782 5.62040 5.76543 5.88496 5.96544 6.03350 6.10180 6.18654 6.30543 6.36192 6.41328 6.57088 7.06871 7.25094 7.33376 7.68894 7.76699 7.95980 8.14247 8.49109 9.06633 9.62456 11.10228 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022305 B = 0.005776 C = 0.005033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.004864 B = 4846.135863 C = 5561.845579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.352 6.352 3 C 0.464 3.536 4 O -0.508 6.508 5 C -0.022 4.022 6 C 0.045 3.955 7 N -0.490 5.490 8 C 0.179 3.821 9 C -0.501 4.501 10 H 0.065 0.935 11 C 0.053 3.947 12 N -0.901 5.901 13 Si 0.899 3.101 14 H -0.271 1.271 15 H -0.286 1.286 16 H -0.284 1.284 17 C 0.052 3.948 18 C -0.131 4.131 19 H 0.103 0.897 20 C 0.080 3.920 21 O -0.355 6.355 22 C 0.065 3.935 23 C -0.135 4.135 24 H 0.060 0.940 25 H 0.101 0.899 26 H 0.062 0.938 27 H 0.038 0.962 28 H 0.088 0.912 29 H -0.006 1.006 30 H 0.031 0.969 31 H 0.260 0.740 32 H 0.038 0.962 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.044 0.956 36 H 0.043 0.957 37 H 0.096 0.904 38 H 0.068 0.932 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.659 -0.918 -14.914 17.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.269 6.269 3 C 0.307 3.693 4 O -0.395 6.395 5 C -0.024 4.024 6 C -0.084 4.084 7 N -0.214 5.214 8 C 0.053 3.947 9 C -0.540 4.540 10 H 0.084 0.916 11 C -0.147 4.147 12 N -0.541 5.541 13 Si 0.727 3.273 14 H -0.195 1.195 15 H -0.212 1.212 16 H -0.210 1.210 17 C -0.077 4.077 18 C -0.150 4.150 19 H 0.121 0.879 20 C 0.003 3.997 21 O -0.273 6.273 22 C -0.012 4.012 23 C -0.173 4.173 24 H 0.079 0.921 25 H 0.119 0.881 26 H 0.081 0.919 27 H 0.056 0.944 28 H 0.106 0.894 29 H 0.012 0.988 30 H 0.049 0.951 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.105 0.895 34 H 0.118 0.882 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.114 0.886 38 H 0.086 0.914 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.175 -0.792 -14.964 17.571 hybrid contribution -0.686 0.463 1.068 1.351 sum -9.861 -0.329 -13.896 17.042 Atomic orbital electron populations 1.23270 0.76701 1.03640 1.02423 1.86541 1.23091 1.33239 1.83987 1.24216 0.92689 0.81189 0.71166 1.90585 1.66892 1.36269 1.45796 1.19966 0.85348 0.98080 0.99016 1.23560 0.94344 0.98099 0.92424 1.65975 1.32174 1.00759 1.22532 1.19937 0.96402 0.97499 0.80818 1.21151 1.07819 1.30009 0.95019 0.91639 1.25002 0.97508 0.95689 0.96539 1.69977 1.39430 1.40719 1.03963 0.86422 0.83121 0.79345 0.78450 1.19544 1.21190 1.21039 1.23313 0.97518 0.94186 0.92668 1.21866 1.01386 0.93439 0.98318 0.87932 1.22162 0.92923 0.90748 0.93908 1.88241 1.31254 1.38816 1.68959 1.22139 0.94914 0.91469 0.92668 1.21131 1.00720 1.00388 0.95016 0.92094 0.88074 0.91899 0.94375 0.89351 0.98818 0.95083 0.93023 0.94378 0.89523 0.88186 0.93813 0.93870 0.88578 0.91373 0.89277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 101.05 1.07 1.40 16 2 O -0.35 -4.77 10.02 -39.27 -0.39 -5.17 16 3 C 0.46 7.17 5.71 36.00 0.21 7.38 16 4 O -0.51 -8.68 14.62 -18.75 -0.27 -8.95 16 5 C -0.02 -0.35 0.91 -157.06 -0.14 -0.49 16 6 C 0.04 0.82 5.39 -1.74 -0.01 0.81 16 7 N -0.49 -10.74 5.36 -230.33 -1.23 -11.98 16 8 C 0.18 4.72 4.61 -4.97 -0.02 4.69 16 9 C -0.50 -14.25 9.00 -34.44 -0.31 -14.56 16 10 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 11 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 12 N -0.90 -27.01 13.29 55.43 0.74 -26.28 16 13 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 14 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 15 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 16 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 17 C 0.05 1.01 5.72 -1.84 -0.01 1.00 16 18 C -0.13 -2.13 2.72 -91.41 -0.25 -2.38 16 19 H 0.10 1.69 5.90 -51.93 -0.31 1.38 16 20 C 0.08 1.15 6.27 36.24 0.23 1.38 16 21 O -0.36 -5.58 10.88 -35.23 -0.38 -5.96 16 22 C 0.07 0.81 6.79 36.31 0.25 1.05 16 23 C -0.13 -1.75 5.34 -29.18 -0.16 -1.91 16 24 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 25 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 27 H 0.04 0.73 7.57 -51.93 -0.39 0.34 16 28 H 0.09 1.53 7.15 -51.92 -0.37 1.16 16 29 H -0.01 -0.17 7.77 -51.93 -0.40 -0.57 16 30 H 0.03 0.87 8.08 -51.93 -0.42 0.45 16 31 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 32 H 0.04 0.79 7.77 -51.93 -0.40 0.38 16 33 H 0.09 1.72 7.34 -51.93 -0.38 1.34 16 34 H 0.10 1.39 7.36 -51.93 -0.38 1.01 16 35 H 0.04 0.54 7.97 -51.93 -0.41 0.13 16 36 H 0.04 0.46 7.97 -51.93 -0.41 0.05 16 37 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.07 0.77 7.12 -51.93 -0.37 0.40 16 39 H 0.09 1.15 6.94 -51.93 -0.36 0.79 16 LS Contribution 311.09 15.07 4.69 4.69 Total: -1.00 -32.45 311.09 -6.99 -39.44 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -5.85 Total: -2.47 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: 0.75 Total: -0.19 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: -0.50 Total: -38.25 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -1.05 Total: -20.08 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.45 -6.99 -39.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373796712.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.542 kcal (2) G-P(sol) polarization free energy of solvation -32.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds