Wall clock time and date at job start Mon Mar 30 2020 05:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34233 * 117.00014 * 2 1 4 4 O 1.20827 * 119.99612 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00203 * 180.02562 * 3 2 1 6 6 C 1.54841 * 107.09950 * 300.65172 * 5 3 2 7 7 N 1.48899 * 103.85053 * 221.20638 * 6 5 3 8 8 C 1.46899 * 110.99771 * 160.09958 * 7 6 5 9 9 C 1.50703 * 109.46692 * 170.00198 * 8 7 6 10 10 H 1.07999 * 120.00210 * 359.97438 * 9 8 7 11 11 C 1.37878 * 120.00001 * 179.97438 * 9 8 7 12 12 N 1.31522 * 119.99748 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00027 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47244 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.46975 * 119.99888 * 13 11 9 16 16 H 1.48499 * 109.46940 * 239.99650 * 13 11 9 17 17 C 1.48890 * 103.57824 * 40.91061 * 7 6 5 18 18 C 1.51508 * 106.99631 * 188.11988 * 5 3 2 19 19 H 1.08997 * 108.57037 * 358.65457 * 18 5 3 20 20 C 1.51177 * 115.89249 * 236.08763 * 18 5 3 21 21 O 1.42746 * 110.78888 * 330.39735 * 20 18 5 22 22 C 1.42830 * 111.52011 * 65.82631 * 21 20 18 23 23 C 1.49753 * 107.52742 * 59.30021 * 5 3 2 24 24 H 1.09003 * 109.47329 * 59.99638 * 1 2 3 25 25 H 1.08995 * 109.47044 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47398 * 299.99882 * 1 2 3 27 27 H 1.08997 * 110.55215 * 339.80037 * 6 5 3 28 28 H 1.09007 * 110.54778 * 102.46836 * 6 5 3 29 29 H 1.09003 * 109.47014 * 289.99556 * 8 7 6 30 30 H 1.08990 * 109.47489 * 50.00226 * 8 7 6 31 31 H 0.97002 * 119.99600 * 180.02562 * 12 11 9 32 32 H 1.09004 * 110.53710 * 77.99858 * 17 7 6 33 33 H 1.08998 * 110.54072 * 200.63281 * 17 7 6 34 34 H 1.09002 * 109.20844 * 210.07053 * 20 18 5 35 35 H 1.09005 * 109.20648 * 90.71818 * 20 18 5 36 36 H 1.09001 * 109.32102 * 53.88878 * 22 21 20 37 37 H 1.08993 * 109.32143 * 173.33114 * 22 21 20 38 38 H 1.08997 * 108.11685 * 1.20870 * 23 5 3 39 39 H 1.09006 * 108.11587 * 244.75112 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0609 0.5451 1.2723 7 7 5.1616 1.4124 1.7755 8 6 5.4332 1.1480 3.1948 9 6 6.6994 1.8552 3.6041 10 1 7.2478 2.4420 2.8820 11 6 7.1579 1.7532 4.9004 12 7 6.4898 1.0390 5.7798 13 14 8.7279 2.6291 5.4075 14 1 9.2861 3.3595 4.2413 15 1 8.4275 3.5918 6.4976 16 1 9.7183 1.6319 5.8868 17 6 4.6365 2.7920 1.5806 18 6 3.9335 2.7305 0.2042 19 1 3.0153 3.3142 0.2702 20 6 4.8208 3.3429 -0.8555 21 8 5.6698 2.3545 -1.4386 22 6 4.9188 1.3832 -2.1683 23 6 4.0543 0.5708 -1.2288 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 3.2608 0.4760 2.0091 28 1 4.4365 -0.4474 1.0226 29 1 4.6019 1.5132 3.7979 30 1 5.5501 0.0754 3.3487 31 1 6.8121 0.9675 6.6919 32 1 3.9221 3.0435 2.3646 33 1 5.4534 3.5133 1.5634 34 1 5.4350 4.1214 -0.4029 35 1 4.1979 3.7846 -1.6334 36 1 4.2838 1.8899 -2.8951 37 1 5.6038 0.7181 -2.6940 38 1 3.1858 0.2195 -1.7858 39 1 4.6245 -0.3034 -0.9143 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000373796712.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:42 Heat of formation + Delta-G solvation = -135.168378 kcal Electronic energy + Delta-G solvation = -22048.900160 eV Core-core repulsion = 18763.190567 eV Total energy + Delta-G solvation = -3285.709593 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.65592 -40.45340 -38.28962 -37.65737 -35.39407 -34.19159 -32.87450 -29.81576 -29.11256 -28.10264 -26.33048 -24.87636 -24.07352 -22.80198 -22.14041 -19.86070 -18.83771 -18.33461 -18.10430 -17.56966 -17.25396 -16.83182 -16.40658 -16.20795 -15.74618 -15.37745 -14.88789 -14.75819 -14.35873 -14.25080 -13.92787 -13.71132 -13.28793 -13.15017 -12.96336 -12.86557 -12.69158 -12.47090 -12.34119 -12.23928 -12.03837 -11.89169 -11.66407 -11.36944 -11.32885 -11.11626 -10.63522 -10.41019 -9.28690 -8.22142 -6.32079 0.96818 1.41249 1.41998 1.53574 1.56568 2.40524 3.10385 3.11045 3.13795 3.27279 3.38568 3.61243 3.86460 3.97561 4.09537 4.23881 4.27365 4.29901 4.33243 4.50946 4.56196 4.59962 4.65999 4.71199 4.77076 4.82607 4.85933 4.99380 5.04093 5.06831 5.14671 5.22366 5.26095 5.62277 5.93328 6.12444 6.29455 6.41527 6.53532 6.83118 7.37779 8.89715 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022305 B = 0.005776 C = 0.005033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.004864 B = 4846.135863 C = 5561.845579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.355 6.355 3 C 0.468 3.532 4 O -0.527 6.527 5 C -0.018 4.018 6 C 0.043 3.957 7 N -0.498 5.498 8 C 0.195 3.805 9 C -0.519 4.519 10 H 0.062 0.938 11 C 0.001 3.999 12 N -0.937 5.937 13 Si 0.972 3.028 14 H -0.263 1.263 15 H -0.278 1.278 16 H -0.277 1.277 17 C 0.050 3.950 18 C -0.121 4.121 19 H 0.103 0.897 20 C 0.080 3.920 21 O -0.380 6.380 22 C 0.060 3.940 23 C -0.135 4.135 24 H 0.071 0.929 25 H 0.135 0.865 26 H 0.055 0.945 27 H 0.024 0.976 28 H 0.098 0.902 29 H -0.037 1.037 30 H 0.006 0.994 31 H 0.265 0.735 32 H 0.018 0.982 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.116 0.884 38 H 0.090 0.910 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.535 -0.818 -16.829 19.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.271 6.271 3 C 0.312 3.688 4 O -0.416 6.416 5 C -0.020 4.020 6 C -0.085 4.085 7 N -0.222 5.222 8 C 0.069 3.931 9 C -0.557 4.557 10 H 0.081 0.919 11 C -0.197 4.197 12 N -0.577 5.577 13 Si 0.796 3.204 14 H -0.187 1.187 15 H -0.204 1.204 16 H -0.203 1.203 17 C -0.078 4.078 18 C -0.140 4.140 19 H 0.121 0.879 20 C 0.003 3.997 21 O -0.298 6.298 22 C -0.017 4.017 23 C -0.173 4.173 24 H 0.090 0.910 25 H 0.153 0.847 26 H 0.074 0.926 27 H 0.042 0.958 28 H 0.117 0.883 29 H -0.019 1.019 30 H 0.025 0.975 31 H 0.073 0.927 32 H 0.037 0.963 33 H 0.099 0.901 34 H 0.118 0.882 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.134 0.866 38 H 0.109 0.891 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.067 -0.707 -16.903 19.195 hybrid contribution -0.832 0.360 1.668 1.898 sum -9.899 -0.347 -15.236 18.172 Atomic orbital electron populations 1.23624 0.74529 1.05991 1.02605 1.86522 1.25181 1.31999 1.83388 1.24063 0.92487 0.81507 0.70792 1.90577 1.67220 1.36985 1.46854 1.19921 0.86021 0.97280 0.98747 1.23616 0.92952 0.98445 0.93519 1.65862 1.34393 1.02667 1.19246 1.19574 0.94891 0.95465 0.83199 1.21420 1.08534 1.30332 0.95446 0.91937 1.25938 1.01061 0.96281 0.96422 1.70099 1.41260 1.41905 1.04459 0.85291 0.78612 0.78232 0.78240 1.18672 1.20404 1.20253 1.23329 0.97115 0.92787 0.94603 1.21815 1.01256 0.94269 0.96671 0.87941 1.22195 0.92910 0.90555 0.94047 1.88212 1.32534 1.39645 1.69408 1.22400 0.95447 0.91311 0.92508 1.21179 1.01837 1.00136 0.94131 0.91047 0.84713 0.92630 0.95785 0.88339 1.01917 0.97548 0.92653 0.96345 0.90113 0.88175 0.90992 0.91574 0.86581 0.89117 0.89312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.56 113.37 1.20 1.65 16 2 O -0.36 -9.00 10.02 -51.45 -0.52 -9.51 16 3 C 0.47 13.87 5.71 71.23 0.41 14.28 16 4 O -0.53 -17.44 14.62 21.96 0.32 -17.12 16 5 C -0.02 -0.54 0.91 -53.83 -0.05 -0.59 16 6 C 0.04 1.61 5.39 86.54 0.47 2.08 16 7 N -0.50 -22.47 5.36 -882.61 -4.73 -27.20 16 8 C 0.20 10.79 4.61 85.56 0.39 11.18 16 9 C -0.52 -30.28 9.00 25.60 0.23 -30.05 16 10 H 0.06 3.61 7.81 -2.91 -0.02 3.59 16 11 C 0.00 0.04 5.46 84.65 0.46 0.50 16 12 N -0.94 -57.38 13.29 21.45 0.28 -57.09 16 13 Si 0.97 45.14 29.54 68.60 2.03 47.17 16 14 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 15 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 16 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 17 C 0.05 2.02 5.72 86.49 0.49 2.52 16 18 C -0.12 -3.87 2.72 -11.31 -0.03 -3.90 16 19 H 0.10 3.31 5.90 -2.39 -0.01 3.30 16 20 C 0.08 2.17 6.27 71.39 0.45 2.62 16 21 O -0.38 -11.13 10.88 -148.98 -1.62 -12.75 16 22 C 0.06 1.29 6.79 71.44 0.48 1.77 16 23 C -0.14 -3.18 5.34 29.01 0.15 -3.03 16 24 H 0.07 1.15 8.13 -2.39 -0.02 1.13 16 25 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.05 1.09 8.13 -2.39 -0.02 1.07 16 27 H 0.02 0.95 7.57 -2.39 -0.02 0.94 16 28 H 0.10 3.42 7.15 -2.38 -0.02 3.40 16 29 H -0.04 -2.21 7.77 -2.39 -0.02 -2.23 16 30 H 0.01 0.38 8.08 -2.39 -0.02 0.36 16 31 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 32 H 0.02 0.80 7.77 -2.38 -0.02 0.78 16 33 H 0.08 3.31 7.34 -2.39 -0.02 3.29 16 34 H 0.10 2.68 7.36 -2.39 -0.02 2.67 16 35 H 0.07 1.57 7.97 -2.38 -0.02 1.55 16 36 H 0.07 1.14 7.97 -2.39 -0.02 1.12 16 37 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.09 1.74 7.12 -2.39 -0.02 1.72 16 39 H 0.09 2.10 6.94 -2.38 -0.02 2.09 16 Total: -1.00 -70.99 311.09 1.47 -69.52 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: 1.04 Total: 7.94 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: 4.66 Total: -0.96 kcal Atomic # 7 Polarization: -79.85 SS G_CDS: -4.44 Total: -84.29 kcal Atomic # 8 Polarization: -37.57 SS G_CDS: -1.82 Total: -39.38 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -70.99 1.47 -69.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373796712.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.643 kcal (2) G-P(sol) polarization free energy of solvation -70.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds