Wall clock time and date at job start Mon Mar 30 2020 05:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47047 * 22.77700 * 3 2 1 5 5 C 1.36931 * 120.00376 * 264.13561 * 4 3 2 6 6 H 1.08002 * 120.00478 * 202.39832 * 5 4 3 7 7 C 1.38817 * 119.99594 * 22.39608 * 5 4 3 8 8 N 1.31613 * 120.00132 * 11.76188 * 7 5 4 9 9 Si 1.86800 * 119.99699 * 191.75840 * 7 5 4 10 10 H 1.48500 * 109.47192 * 60.00685 * 9 7 5 11 11 H 1.48503 * 109.47179 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47577 * 300.00180 * 9 7 5 13 13 C 1.46504 * 119.99861 * 84.13916 * 4 3 2 14 14 C 1.53008 * 109.46797 * 89.99858 * 13 4 3 15 15 H 1.08997 * 109.46987 * 304.99560 * 14 13 4 16 16 O 1.42895 * 109.47098 * 65.00323 * 14 13 4 17 17 C 1.53008 * 109.46714 * 185.00084 * 14 13 4 18 18 N 1.46897 * 109.46977 * 177.05333 * 17 14 13 19 19 C 1.47014 * 110.99714 * 170.15215 * 18 17 14 20 20 C 1.53096 * 109.25499 * 182.34642 * 19 18 17 21 21 O 1.43016 * 109.30105 * 303.22622 * 20 19 18 22 22 C 1.43017 * 113.73808 * 58.63934 * 21 20 19 23 23 C 1.47011 * 110.99950 * 293.83927 * 18 17 14 24 24 H 1.08999 * 109.46661 * 262.77680 * 3 2 1 25 25 H 1.08999 * 109.46589 * 142.77966 * 3 2 1 26 26 H 0.97000 * 120.00189 * 179.97438 * 8 7 5 27 27 H 1.08999 * 109.47183 * 329.99930 * 13 4 3 28 28 H 1.09003 * 109.47233 * 209.99467 * 13 4 3 29 29 H 0.96693 * 114.00508 * 59.99559 * 16 14 13 30 30 H 1.08992 * 109.47112 * 57.05011 * 17 14 13 31 31 H 1.08997 * 109.46589 * 297.05013 * 17 14 13 32 32 H 1.09005 * 109.46662 * 62.44224 * 19 18 17 33 33 H 1.08993 * 109.55078 * 302.31185 * 19 18 17 34 34 H 1.09004 * 109.51019 * 183.26296 * 20 19 18 35 35 H 1.09001 * 109.50753 * 63.18238 * 20 19 18 36 36 H 1.08999 * 109.50154 * 61.26863 * 22 21 20 37 37 H 1.08997 * 109.50680 * 181.35139 * 22 21 20 38 38 H 1.09001 * 109.51031 * 57.67302 * 23 18 17 39 39 H 1.08997 * 109.50486 * 297.54003 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0969 -1.2726 -0.5347 5 6 3.4399 -2.2871 0.3186 6 1 4.1175 -3.0620 -0.0083 7 6 2.9165 -2.3196 1.6039 8 7 1.9228 -1.5207 1.9303 9 14 3.6227 -3.4973 2.8703 10 1 5.0623 -3.1973 3.0767 11 1 2.8952 -3.3372 4.1550 12 1 3.4723 -4.8932 2.3864 13 6 3.2190 -1.4605 -1.9825 14 6 4.6143 -1.0272 -2.4371 15 1 4.7995 -0.0026 -2.1147 16 8 5.5936 -1.8929 -1.8597 17 6 4.7006 -1.1052 -3.9628 18 7 6.0160 -0.6224 -4.4040 19 6 6.2259 -0.8976 -5.8328 20 6 7.6277 -0.4324 -6.2359 21 8 7.7730 0.9557 -5.9239 22 6 7.5760 1.2584 -4.5401 23 6 6.1733 0.8114 -4.1201 24 1 2.9712 0.1300 1.0195 25 1 2.9709 0.8192 -0.6216 26 1 1.5569 -1.5437 2.8283 27 1 2.4673 -0.8574 -2.4918 28 1 3.0677 -2.5120 -2.2265 29 1 5.4898 -2.8226 -2.1041 30 1 3.9196 -0.4855 -4.4030 31 1 4.5673 -2.1389 -4.2817 32 1 5.4812 -0.3598 -6.4197 33 1 6.1309 -1.9678 -6.0160 34 1 7.7668 -0.5813 -7.3067 35 1 8.3738 -1.0085 -5.6885 36 1 8.3200 0.7314 -3.9428 37 1 7.6785 2.3323 -4.3843 38 1 6.0394 0.9880 -3.0528 39 1 5.4283 1.3771 -4.6795 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380044031.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:02 Heat of formation + Delta-G solvation = -32.034305 kcal Electronic energy + Delta-G solvation = -21191.722000 eV Core-core repulsion = 17942.777387 eV Total energy + Delta-G solvation = -3248.944613 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.68970 -37.68892 -35.98600 -34.94892 -34.02086 -31.57509 -31.28844 -29.85746 -27.66392 -26.62360 -24.51461 -24.12243 -21.94787 -20.75418 -20.38484 -17.48361 -16.84227 -16.28898 -15.99435 -15.57804 -15.49790 -15.17302 -14.97338 -14.74360 -14.31718 -13.84936 -13.63478 -13.50615 -12.98605 -12.43076 -12.12211 -11.96928 -11.75117 -11.50828 -11.39229 -11.24912 -11.16244 -10.87666 -10.69235 -10.66377 -10.43355 -10.18065 -9.98629 -9.91517 -9.87299 -9.49224 -8.65274 -8.34698 -7.04970 -5.90647 -3.36129 3.36461 3.43073 3.43756 3.63057 3.78715 4.14310 4.39304 4.51841 4.74350 4.86594 4.90267 4.98834 5.04379 5.18631 5.24207 5.32466 5.37833 5.44554 5.53408 5.61117 5.65160 5.66321 5.72156 5.78610 5.86426 5.89898 6.01779 6.34778 6.56671 6.69545 6.91312 6.93703 7.03329 7.09123 7.71337 8.17681 8.35295 9.01216 9.22352 9.64177 10.09219 11.17595 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.025011 B = 0.004618 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.259865 B = 6062.248102 C = 6657.650085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C 0.254 3.746 3 C 0.260 3.740 4 N -0.576 5.576 5 C -0.247 4.247 6 H 0.079 0.921 7 C 0.000 4.000 8 N -0.913 5.913 9 Si 0.915 3.085 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.284 1.284 13 C 0.117 3.883 14 C 0.095 3.905 15 H 0.090 0.910 16 O -0.535 6.535 17 C 0.022 3.978 18 N -0.525 5.525 19 C 0.017 3.983 20 C 0.065 3.935 21 O -0.390 6.390 22 C 0.064 3.936 23 C 0.016 3.984 24 H 0.115 0.885 25 H 0.051 0.949 26 H 0.259 0.741 27 H 0.044 0.956 28 H 0.056 0.944 29 H 0.362 0.638 30 H 0.039 0.961 31 H 0.076 0.924 32 H 0.038 0.962 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.082 2.976 -14.051 18.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.196 5.196 2 C -0.064 4.064 3 C 0.130 3.870 4 N -0.295 5.295 5 C -0.376 4.376 6 H 0.097 0.903 7 C -0.198 4.198 8 N -0.559 5.559 9 Si 0.745 3.255 10 H -0.208 1.208 11 H -0.218 1.218 12 H -0.211 1.211 13 C -0.011 4.011 14 C 0.032 3.968 15 H 0.108 0.892 16 O -0.338 6.338 17 C -0.107 4.107 18 N -0.250 5.250 19 C -0.112 4.112 20 C -0.012 4.012 21 O -0.309 6.309 22 C -0.013 4.013 23 C -0.112 4.112 24 H 0.133 0.867 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.208 0.792 30 H 0.057 0.943 31 H 0.094 0.906 32 H 0.056 0.944 33 H 0.102 0.898 34 H 0.112 0.888 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 9.949 3.414 -13.478 17.097 hybrid contribution -0.408 -1.043 0.288 1.156 sum 9.542 2.371 -13.190 16.451 Atomic orbital electron populations 1.80801 1.14537 1.11459 1.12828 1.30489 0.96307 0.90148 0.89470 1.18249 0.80357 0.87098 1.01321 1.43766 1.74200 1.11781 0.99797 1.19215 1.21050 1.04024 0.93265 0.90280 1.25021 0.96475 0.99169 0.99135 1.69735 1.24847 1.41191 1.20088 0.86172 0.78490 0.80359 0.80524 1.20775 1.21816 1.21070 1.21525 0.93780 0.99837 0.86000 1.22667 0.90846 0.95346 0.87930 0.89235 1.86616 1.53077 1.20265 1.73801 1.22971 0.88603 1.00473 0.98628 1.62149 1.31294 1.15755 1.15765 1.22787 0.97648 1.01650 0.89095 1.22634 0.95565 0.82448 1.00599 1.87954 1.91836 1.25060 1.26016 1.22674 0.95641 1.00789 0.82169 1.22828 0.97452 0.88309 1.02637 0.86689 0.93157 0.93028 0.93747 0.92607 0.79213 0.94294 0.90583 0.94374 0.89810 0.88824 0.92228 0.92048 0.88594 0.88827 0.94314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -13.27 18.54 42.15 0.78 -12.49 16 2 C 0.25 6.08 13.51 -20.76 -0.28 5.80 16 3 C 0.26 5.52 5.41 -6.83 -0.04 5.48 16 4 N -0.58 -12.54 2.47 -176.56 -0.44 -12.98 16 5 C -0.25 -6.04 9.22 -15.06 -0.14 -6.18 16 6 H 0.08 1.89 7.59 -52.49 -0.40 1.49 16 7 C 0.00 -0.01 5.07 -17.43 -0.09 -0.10 16 8 N -0.91 -24.94 9.10 55.49 0.51 -24.43 16 9 Si 0.91 20.98 29.57 -169.99 -5.03 15.95 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 C 0.12 2.03 5.36 -4.04 -0.02 2.01 16 14 C 0.09 1.40 3.14 -26.72 -0.08 1.32 16 15 H 0.09 1.39 6.38 -51.93 -0.33 1.06 16 16 O -0.53 -8.82 12.50 -35.23 -0.44 -9.26 16 17 C 0.02 0.27 4.60 -3.82 -0.02 0.25 16 18 N -0.52 -6.26 4.64 -234.32 -1.09 -7.35 16 19 C 0.02 0.17 5.65 -3.71 -0.02 0.15 16 20 C 0.06 0.62 7.01 37.21 0.26 0.89 16 21 O -0.39 -4.56 10.83 -35.23 -0.38 -4.95 16 22 C 0.06 0.68 7.01 37.21 0.26 0.94 16 23 C 0.02 0.18 5.44 -3.71 -0.02 0.16 16 24 H 0.12 2.67 6.50 -51.93 -0.34 2.33 16 25 H 0.05 0.87 8.11 -51.93 -0.42 0.45 16 26 H 0.26 7.13 8.31 -40.82 -0.34 6.80 16 27 H 0.04 0.74 8.07 -51.93 -0.42 0.32 16 28 H 0.06 0.97 8.04 -51.93 -0.42 0.56 16 29 H 0.36 5.07 9.04 45.56 0.41 5.48 16 30 H 0.04 0.46 8.12 -51.93 -0.42 0.04 16 31 H 0.08 0.86 8.04 -51.93 -0.42 0.44 16 32 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.75 8.09 -51.93 -0.42 0.33 16 34 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.09 1.11 6.32 -51.93 -0.33 0.78 16 39 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 321.84 15.07 4.85 4.85 Total: -1.00 -30.79 321.84 -6.59 -37.38 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -5.17 Total: 2.56 kcal Atomic # 6 Polarization: 10.90 SS G_CDS: -0.19 Total: 10.71 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: -0.24 Total: -57.25 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -0.82 Total: -14.21 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.03 Total: 15.95 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.79 -6.59 -37.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380044031.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.350 kcal (2) G-P(sol) polarization free energy of solvation -30.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds