Wall clock time and date at job start Mon Mar 30 2020 05:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47047 * 22.77700 * 3 2 1 5 5 C 1.36931 * 120.00376 * 264.13561 * 4 3 2 6 6 H 1.08002 * 120.00478 * 202.39832 * 5 4 3 7 7 C 1.38817 * 119.99594 * 22.39608 * 5 4 3 8 8 N 1.31613 * 120.00132 * 11.76188 * 7 5 4 9 9 Si 1.86800 * 119.99699 * 191.75840 * 7 5 4 10 10 H 1.48500 * 109.47192 * 60.00685 * 9 7 5 11 11 H 1.48503 * 109.47179 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47577 * 300.00180 * 9 7 5 13 13 C 1.46504 * 119.99861 * 84.13916 * 4 3 2 14 14 C 1.53008 * 109.46797 * 89.99858 * 13 4 3 15 15 H 1.08997 * 109.46987 * 304.99560 * 14 13 4 16 16 O 1.42895 * 109.47098 * 65.00323 * 14 13 4 17 17 C 1.53008 * 109.46714 * 185.00084 * 14 13 4 18 18 N 1.46897 * 109.46977 * 177.05333 * 17 14 13 19 19 C 1.47014 * 110.99714 * 170.15215 * 18 17 14 20 20 C 1.53096 * 109.25499 * 182.34642 * 19 18 17 21 21 O 1.43016 * 109.30105 * 303.22622 * 20 19 18 22 22 C 1.43017 * 113.73808 * 58.63934 * 21 20 19 23 23 C 1.47011 * 110.99950 * 293.83927 * 18 17 14 24 24 H 1.08999 * 109.46661 * 262.77680 * 3 2 1 25 25 H 1.08999 * 109.46589 * 142.77966 * 3 2 1 26 26 H 0.97000 * 120.00189 * 179.97438 * 8 7 5 27 27 H 1.08999 * 109.47183 * 329.99930 * 13 4 3 28 28 H 1.09003 * 109.47233 * 209.99467 * 13 4 3 29 29 H 0.96693 * 114.00508 * 59.99559 * 16 14 13 30 30 H 1.08992 * 109.47112 * 57.05011 * 17 14 13 31 31 H 1.08997 * 109.46589 * 297.05013 * 17 14 13 32 32 H 1.09005 * 109.46662 * 62.44224 * 19 18 17 33 33 H 1.08993 * 109.55078 * 302.31185 * 19 18 17 34 34 H 1.09004 * 109.51019 * 183.26296 * 20 19 18 35 35 H 1.09001 * 109.50753 * 63.18238 * 20 19 18 36 36 H 1.08999 * 109.50154 * 61.26863 * 22 21 20 37 37 H 1.08997 * 109.50680 * 181.35139 * 22 21 20 38 38 H 1.09001 * 109.51031 * 57.67302 * 23 18 17 39 39 H 1.08997 * 109.50486 * 297.54003 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0969 -1.2726 -0.5347 5 6 3.4399 -2.2871 0.3186 6 1 4.1175 -3.0620 -0.0083 7 6 2.9165 -2.3196 1.6039 8 7 1.9228 -1.5207 1.9303 9 14 3.6227 -3.4973 2.8703 10 1 5.0623 -3.1973 3.0767 11 1 2.8952 -3.3372 4.1550 12 1 3.4723 -4.8932 2.3864 13 6 3.2190 -1.4605 -1.9825 14 6 4.6143 -1.0272 -2.4371 15 1 4.7995 -0.0026 -2.1147 16 8 5.5936 -1.8929 -1.8597 17 6 4.7006 -1.1052 -3.9628 18 7 6.0160 -0.6224 -4.4040 19 6 6.2259 -0.8976 -5.8328 20 6 7.6277 -0.4324 -6.2359 21 8 7.7730 0.9557 -5.9239 22 6 7.5760 1.2584 -4.5401 23 6 6.1733 0.8114 -4.1201 24 1 2.9712 0.1300 1.0195 25 1 2.9709 0.8192 -0.6216 26 1 1.5569 -1.5437 2.8283 27 1 2.4673 -0.8574 -2.4918 28 1 3.0677 -2.5120 -2.2265 29 1 5.4898 -2.8226 -2.1041 30 1 3.9196 -0.4855 -4.4030 31 1 4.5673 -2.1389 -4.2817 32 1 5.4812 -0.3598 -6.4197 33 1 6.1309 -1.9678 -6.0160 34 1 7.7668 -0.5813 -7.3067 35 1 8.3738 -1.0085 -5.6885 36 1 8.3200 0.7314 -3.9428 37 1 7.6785 2.3323 -4.3843 38 1 6.0394 0.9880 -3.0528 39 1 5.4283 1.3771 -4.6795 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380044031.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:01 Heat of formation + Delta-G solvation = -55.564464 kcal Electronic energy + Delta-G solvation = -21192.742344 eV Core-core repulsion = 17942.777387 eV Total energy + Delta-G solvation = -3249.964958 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.56571 -38.98932 -37.50938 -36.20365 -35.70413 -33.30904 -32.10419 -31.11482 -29.08540 -28.14063 -25.81850 -24.96041 -23.38432 -22.04176 -21.25077 -19.30344 -18.05976 -17.44197 -17.17020 -16.92758 -16.65639 -16.37910 -15.96098 -15.79737 -15.60778 -15.43591 -15.02902 -14.66433 -14.28683 -13.83665 -13.56594 -13.32004 -13.08993 -12.98635 -12.80133 -12.68764 -12.45148 -12.33038 -12.23973 -11.96604 -11.88567 -11.69473 -11.54893 -11.44590 -11.00578 -10.62763 -10.39614 -9.24608 -8.82584 -7.85345 -5.28983 1.53798 1.56941 1.61891 2.28836 2.52802 2.63305 2.79211 3.01709 3.37336 3.67850 3.86955 3.94602 4.00147 4.05542 4.08828 4.26093 4.30428 4.37966 4.45938 4.60551 4.61165 4.69527 4.78658 4.80268 4.88171 4.91354 4.97938 5.06596 5.11843 5.32371 5.41356 5.75719 6.02719 6.06913 6.23089 6.34197 7.09278 7.23071 7.35274 7.82263 8.22964 9.20289 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.025011 B = 0.004618 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.259865 B = 6062.248102 C = 6657.650085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C 0.266 3.734 3 C 0.260 3.740 4 N -0.588 5.588 5 C -0.234 4.234 6 H 0.085 0.915 7 C -0.053 4.053 8 N -0.941 5.941 9 Si 0.967 3.033 10 H -0.277 1.277 11 H -0.307 1.307 12 H -0.282 1.282 13 C 0.116 3.884 14 C 0.109 3.891 15 H 0.084 0.916 16 O -0.554 6.554 17 C 0.032 3.968 18 N -0.537 5.537 19 C 0.018 3.982 20 C 0.062 3.938 21 O -0.406 6.406 22 C 0.065 3.935 23 C 0.016 3.984 24 H 0.096 0.904 25 H 0.097 0.903 26 H 0.246 0.754 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.373 0.627 30 H 0.044 0.956 31 H 0.087 0.913 32 H 0.037 0.963 33 H 0.097 0.903 34 H 0.115 0.885 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.112 0.888 38 H 0.087 0.913 39 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.387 2.784 -15.717 20.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.237 5.237 2 C -0.051 4.051 3 C 0.130 3.870 4 N -0.308 5.308 5 C -0.364 4.364 6 H 0.103 0.897 7 C -0.247 4.247 8 N -0.589 5.589 9 Si 0.798 3.202 10 H -0.203 1.203 11 H -0.234 1.234 12 H -0.209 1.209 13 C -0.011 4.011 14 C 0.047 3.953 15 H 0.102 0.898 16 O -0.358 6.358 17 C -0.097 4.097 18 N -0.262 5.262 19 C -0.110 4.110 20 C -0.015 4.015 21 O -0.325 6.325 22 C -0.012 4.012 23 C -0.112 4.112 24 H 0.114 0.886 25 H 0.114 0.886 26 H 0.055 0.945 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.220 0.780 30 H 0.063 0.937 31 H 0.106 0.894 32 H 0.055 0.945 33 H 0.115 0.885 34 H 0.133 0.867 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.130 0.870 38 H 0.105 0.895 39 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 11.287 3.206 -15.192 19.196 hybrid contribution -0.756 -1.001 0.714 1.443 sum 10.531 2.205 -14.478 18.038 Atomic orbital electron populations 1.80793 1.15823 1.12861 1.14221 1.31119 0.96850 0.88924 0.88239 1.18428 0.78752 0.88449 1.01373 1.43986 1.73905 1.11501 1.01457 1.19505 1.19570 1.03956 0.93324 0.89716 1.25592 0.97295 1.00916 1.00876 1.69893 1.26489 1.43095 1.19374 0.85325 0.77748 0.78969 0.78199 1.20318 1.23392 1.20868 1.21700 0.95703 1.00186 0.83495 1.22384 0.88557 0.94613 0.89708 0.89796 1.86586 1.53519 1.21275 1.74446 1.22782 0.89134 1.01394 0.96374 1.62124 1.30946 1.16020 1.17093 1.22838 0.97826 1.02517 0.87831 1.22789 0.95216 0.81533 1.01939 1.87938 1.91887 1.26219 1.26421 1.22723 0.94930 1.01764 0.81768 1.22821 0.97966 0.88204 1.02201 0.88612 0.88567 0.94460 0.92777 0.92648 0.78045 0.93739 0.89433 0.94486 0.88450 0.86691 0.92400 0.92577 0.87012 0.89492 0.94346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 -28.58 18.54 20.01 0.37 -28.21 16 2 C 0.27 12.60 13.51 89.44 1.21 13.81 16 3 C 0.26 10.73 5.41 84.58 0.46 11.19 16 4 N -0.59 -24.74 2.47 -712.53 -1.76 -26.50 16 5 C -0.23 -11.16 9.22 84.04 0.77 -10.39 16 6 H 0.09 3.90 7.59 -2.91 -0.02 3.88 16 7 C -0.05 -2.71 5.07 84.86 0.43 -2.28 16 8 N -0.94 -51.82 9.10 21.65 0.20 -51.62 16 9 Si 0.97 43.18 29.57 68.60 2.03 45.21 16 10 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 11 H -0.31 -14.33 7.11 99.48 0.71 -13.63 16 12 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 13 C 0.12 3.76 5.36 86.38 0.46 4.23 16 14 C 0.11 2.97 3.14 30.60 0.10 3.07 16 15 H 0.08 2.41 6.38 -2.39 -0.02 2.40 16 16 O -0.55 -17.05 12.50 -148.98 -1.86 -18.91 16 17 C 0.03 0.68 4.60 86.31 0.40 1.08 16 18 N -0.54 -11.50 4.64 -895.24 -4.16 -15.66 16 19 C 0.02 0.31 5.65 86.31 0.49 0.80 16 20 C 0.06 1.05 7.01 72.01 0.50 1.55 16 21 O -0.41 -8.67 10.83 -148.98 -1.61 -10.28 16 22 C 0.06 1.26 7.01 72.01 0.50 1.76 16 23 C 0.02 0.34 5.44 86.31 0.47 0.81 16 24 H 0.10 4.41 6.50 -2.39 -0.02 4.39 16 25 H 0.10 3.08 8.11 -2.39 -0.02 3.06 16 26 H 0.25 13.84 8.31 -92.71 -0.77 13.06 16 27 H 0.05 1.67 8.07 -2.39 -0.02 1.65 16 28 H 0.06 1.81 8.04 -2.39 -0.02 1.79 16 29 H 0.37 9.57 9.04 -74.06 -0.67 8.90 16 30 H 0.04 0.93 8.12 -2.39 -0.02 0.91 16 31 H 0.09 1.69 8.04 -2.39 -0.02 1.67 16 32 H 0.04 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.10 1.44 8.09 -2.39 -0.02 1.42 16 34 H 0.12 1.42 8.14 -2.38 -0.02 1.40 16 35 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.09 1.91 6.32 -2.39 -0.02 1.90 16 39 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -64.62 321.84 -0.62 -65.24 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: 0.38 Total: 15.09 kcal Atomic # 6 Polarization: 19.84 SS G_CDS: 5.79 Total: 25.63 kcal Atomic # 7 Polarization: -116.64 SS G_CDS: -5.35 Total: -121.99 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -3.48 Total: -29.20 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -64.62 -0.62 -65.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380044031.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.680 kcal (2) G-P(sol) polarization free energy of solvation -64.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds