Wall clock time and date at job start Mon Mar 30 2020 05:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46493 * 109.46927 * 247.92564 * 3 2 1 5 5 C 1.36938 * 120.00298 * 264.30978 * 4 3 2 6 6 H 1.08001 * 120.00128 * 197.23121 * 5 4 3 7 7 C 1.38820 * 120.00000 * 17.22573 * 5 4 3 8 8 N 1.31620 * 119.99558 * 22.05267 * 7 5 4 9 9 Si 1.86791 * 120.00270 * 202.05165 * 7 5 4 10 10 H 1.48506 * 109.47211 * 90.00204 * 9 7 5 11 11 H 1.48501 * 109.47279 * 209.99894 * 9 7 5 12 12 H 1.48504 * 109.47320 * 330.00288 * 9 7 5 13 13 C 1.46496 * 120.00360 * 84.31062 * 4 3 2 14 14 C 1.53004 * 109.47100 * 270.00013 * 13 4 3 15 15 H 1.09004 * 109.46966 * 59.99788 * 14 13 4 16 16 O 1.42901 * 109.46946 * 299.99434 * 14 13 4 17 17 C 1.53005 * 109.46933 * 179.97438 * 14 13 4 18 18 N 1.46901 * 109.46686 * 185.00122 * 17 14 13 19 19 C 1.47013 * 111.00067 * 66.31993 * 18 17 14 20 20 C 1.53097 * 109.25441 * 182.34705 * 19 18 17 21 21 O 1.43016 * 109.29841 * 303.21988 * 20 19 18 22 22 C 1.43011 * 113.73907 * 58.64378 * 21 20 19 23 23 C 1.47014 * 110.99904 * 190.00090 * 18 17 14 24 24 H 1.09002 * 109.46678 * 127.92896 * 3 2 1 25 25 H 1.08996 * 109.47184 * 7.92729 * 3 2 1 26 26 H 0.96998 * 119.99761 * 179.97438 * 8 7 5 27 27 H 1.08996 * 109.47783 * 149.99600 * 13 4 3 28 28 H 1.09007 * 109.47051 * 29.99455 * 13 4 3 29 29 H 0.96698 * 114.00152 * 300.00124 * 16 14 13 30 30 H 1.09000 * 109.47273 * 65.00246 * 17 14 13 31 31 H 1.09002 * 109.47279 * 304.99993 * 17 14 13 32 32 H 1.08996 * 109.47146 * 62.43685 * 19 18 17 33 33 H 1.09001 * 109.54396 * 302.30501 * 19 18 17 34 34 H 1.09002 * 109.50606 * 183.25657 * 20 19 18 35 35 H 1.09001 * 109.50908 * 63.17790 * 20 19 18 36 36 H 1.09006 * 109.50104 * 61.26693 * 22 21 20 37 37 H 1.08996 * 109.50614 * 181.35194 * 22 21 20 38 38 H 1.09007 * 109.50595 * 57.66791 * 23 18 17 39 39 H 1.09006 * 109.50418 * 297.54291 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0961 0.5199 1.2799 5 6 3.4346 1.8415 1.3984 6 1 4.0442 2.1707 2.2269 7 6 2.9943 2.7582 0.4535 8 7 1.9376 2.4877 -0.2832 9 14 3.9012 4.3754 0.2276 10 1 4.9653 4.2077 -0.7947 11 1 2.9458 5.4206 -0.2195 12 1 4.5139 4.7838 1.5172 13 6 3.2221 -0.3746 2.4332 14 6 1.9124 -0.3742 3.2244 15 1 1.1009 -0.7194 2.5837 16 8 1.6304 0.9511 3.6782 17 6 2.0438 -1.3090 4.4285 18 7 0.7509 -1.4017 5.1197 19 6 -0.2515 -2.0675 4.2750 20 6 -1.5950 -2.0903 5.0087 21 8 -1.4326 -2.7404 6.2722 22 6 -0.4643 -2.1170 7.1202 23 6 0.8909 -2.0953 6.4083 24 1 2.9710 0.6325 -0.8106 25 1 2.9718 -1.0170 -0.1417 26 1 1.6297 3.1284 -0.9432 27 1 4.0336 -0.0295 3.0738 28 1 3.4372 -1.3856 2.0871 29 1 2.3120 1.3229 4.2545 30 1 2.7947 -0.9155 5.1137 31 1 2.3459 -2.2995 4.0884 32 1 0.0680 -3.0889 4.0687 33 1 -0.3581 -1.5223 3.3372 34 1 -2.3268 -2.6338 4.4111 35 1 -1.9408 -1.0688 5.1668 36 1 -0.7765 -1.0959 7.3397 37 1 -0.3789 -2.6794 8.0499 38 1 1.6187 -1.5702 7.0271 39 1 1.2283 -3.1175 6.2367 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380044035.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:04 Heat of formation + Delta-G solvation = -28.946069 kcal Electronic energy + Delta-G solvation = -21557.099491 eV Core-core repulsion = 18308.288794 eV Total energy + Delta-G solvation = -3248.810697 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.59019 -37.60913 -35.91511 -34.80432 -34.00381 -31.52488 -31.19539 -29.78874 -27.63062 -26.59021 -24.46711 -24.02942 -21.92215 -20.61392 -20.28393 -17.49213 -16.73420 -16.19036 -15.97463 -15.61935 -15.35780 -15.07183 -14.93192 -14.62540 -14.23227 -13.73518 -13.58574 -13.32640 -13.02394 -12.35080 -12.10533 -11.87744 -11.64612 -11.47896 -11.36817 -11.27760 -11.12075 -10.87799 -10.65399 -10.56958 -10.30953 -10.07256 -10.04418 -9.88493 -9.73817 -9.24851 -8.62102 -8.23307 -7.12219 -5.89953 -3.26722 3.36030 3.42995 3.46024 3.73510 3.88581 4.16523 4.40745 4.53249 4.82833 4.95202 5.00562 5.09109 5.14607 5.27821 5.29305 5.33894 5.48679 5.54161 5.62464 5.64211 5.70155 5.74624 5.83957 5.87004 5.92991 5.97522 6.09122 6.32599 6.56454 6.74530 7.00802 7.01254 7.05845 7.13631 7.68737 8.16752 8.56375 8.99551 9.23568 9.66010 10.09355 11.19278 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.027419 B = 0.005046 C = 0.004736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.938726 B = 5547.812599 C = 5910.611274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C 0.247 3.753 3 C 0.256 3.744 4 N -0.571 5.571 5 C -0.251 4.251 6 H 0.078 0.922 7 C 0.004 3.996 8 N -0.900 5.900 9 Si 0.907 3.093 10 H -0.287 1.287 11 H -0.294 1.294 12 H -0.280 1.280 13 C 0.114 3.886 14 C 0.088 3.912 15 H 0.086 0.914 16 O -0.525 6.525 17 C 0.023 3.977 18 N -0.525 5.525 19 C 0.018 3.982 20 C 0.065 3.935 21 O -0.390 6.390 22 C 0.064 3.936 23 C 0.017 3.983 24 H 0.113 0.887 25 H 0.056 0.944 26 H 0.257 0.743 27 H 0.057 0.943 28 H 0.049 0.951 29 H 0.358 0.642 30 H 0.075 0.925 31 H 0.036 0.964 32 H 0.037 0.963 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.324 -10.051 10.278 14.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.187 5.187 2 C -0.072 4.072 3 C 0.126 3.874 4 N -0.291 5.291 5 C -0.380 4.380 6 H 0.096 0.904 7 C -0.194 4.194 8 N -0.544 5.544 9 Si 0.737 3.263 10 H -0.214 1.214 11 H -0.220 1.220 12 H -0.206 1.206 13 C -0.014 4.014 14 C 0.025 3.975 15 H 0.104 0.896 16 O -0.326 6.326 17 C -0.106 4.106 18 N -0.250 5.250 19 C -0.110 4.110 20 C -0.012 4.012 21 O -0.309 6.309 22 C -0.013 4.013 23 C -0.111 4.111 24 H 0.130 0.870 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.203 0.797 30 H 0.093 0.907 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.111 0.889 34 H 0.114 0.886 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.112 0.888 38 H 0.101 0.899 39 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -0.201 -9.698 9.933 13.884 hybrid contribution 1.618 0.548 -0.027 1.709 sum 1.417 -9.151 9.906 13.560 Atomic orbital electron populations 1.80809 1.14435 1.13408 1.10050 1.30520 0.96364 0.88989 0.91297 1.18357 0.80572 0.97119 0.91346 1.44111 1.73716 1.07019 1.04252 1.19146 1.25401 0.83007 1.10428 0.90389 1.24860 0.96202 0.97896 1.00475 1.69916 1.21474 1.36695 1.26269 0.86214 0.78984 0.83096 0.77979 1.21447 1.22035 1.20557 1.21682 0.95162 0.94237 0.90325 1.22748 1.00094 0.82765 0.91922 0.89644 1.86728 1.48087 1.28561 1.69260 1.23030 0.90292 0.99501 0.97784 1.62147 1.08411 1.50908 1.03511 1.22805 0.93009 0.97309 0.97926 1.22661 0.96099 0.98248 0.84182 1.87941 1.60179 1.54850 1.27896 1.22633 0.87334 0.98453 0.92869 1.22784 0.98557 0.97272 0.92489 0.86953 0.92594 0.93217 0.92475 0.93237 0.79726 0.90678 0.94556 0.94444 0.88949 0.88574 0.92045 0.92270 0.88827 0.89869 0.94464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -12.98 18.54 42.16 0.78 -12.20 16 2 C 0.25 5.88 12.60 -20.76 -0.26 5.61 16 3 C 0.26 5.38 5.45 -6.83 -0.04 5.34 16 4 N -0.57 -12.33 2.45 -176.58 -0.43 -12.76 16 5 C -0.25 -6.09 9.01 -15.06 -0.14 -6.23 16 6 H 0.08 1.85 7.90 -52.49 -0.41 1.43 16 7 C 0.00 0.11 4.85 -17.43 -0.08 0.03 16 8 N -0.90 -24.75 9.50 55.49 0.53 -24.22 16 9 Si 0.91 20.70 29.61 -169.99 -5.03 15.66 16 10 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 13 C 0.11 1.97 5.41 -4.04 -0.02 1.95 16 14 C 0.09 1.55 3.06 -26.73 -0.08 1.46 16 15 H 0.09 1.76 5.37 -51.93 -0.28 1.49 16 16 O -0.52 -10.76 12.56 -35.23 -0.44 -11.20 16 17 C 0.02 0.32 4.60 -3.82 -0.02 0.30 16 18 N -0.52 -7.56 4.67 -234.30 -1.09 -8.66 16 19 C 0.02 0.26 5.44 -3.71 -0.02 0.24 16 20 C 0.06 0.88 7.01 37.21 0.26 1.14 16 21 O -0.39 -5.34 10.83 -35.23 -0.38 -5.72 16 22 C 0.06 0.73 7.01 37.21 0.26 0.99 16 23 C 0.02 0.20 5.65 -3.71 -0.02 0.18 16 24 H 0.11 2.55 6.45 -51.93 -0.33 2.21 16 25 H 0.06 0.94 7.97 -51.93 -0.41 0.53 16 26 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 27 H 0.06 0.92 8.02 -51.93 -0.42 0.50 16 28 H 0.05 0.74 7.95 -51.93 -0.41 0.33 16 29 H 0.36 6.17 9.05 45.56 0.41 6.58 16 30 H 0.07 0.94 8.04 -51.93 -0.42 0.52 16 31 H 0.04 0.48 8.12 -51.93 -0.42 0.05 16 32 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.09 1.57 6.29 -51.93 -0.33 1.24 16 34 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.08 0.85 8.09 -51.93 -0.42 0.43 16 39 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 319.97 15.07 4.82 4.82 Total: -1.00 -31.27 319.97 -6.53 -37.80 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -5.12 Total: 5.45 kcal Atomic # 6 Polarization: 11.18 SS G_CDS: -0.16 Total: 11.02 kcal Atomic # 7 Polarization: -57.62 SS G_CDS: -0.22 Total: -57.84 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -0.82 Total: -16.92 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.03 Total: 15.66 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.27 -6.53 -37.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380044035.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.855 kcal (2) G-P(sol) polarization free energy of solvation -31.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds