Wall clock time and date at job start Mon Mar 30 2020 05:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46493 * 109.46927 * 247.92564 * 3 2 1 5 5 C 1.36938 * 120.00298 * 264.30978 * 4 3 2 6 6 H 1.08001 * 120.00128 * 197.23121 * 5 4 3 7 7 C 1.38820 * 120.00000 * 17.22573 * 5 4 3 8 8 N 1.31620 * 119.99558 * 22.05267 * 7 5 4 9 9 Si 1.86791 * 120.00270 * 202.05165 * 7 5 4 10 10 H 1.48506 * 109.47211 * 90.00204 * 9 7 5 11 11 H 1.48501 * 109.47279 * 209.99894 * 9 7 5 12 12 H 1.48504 * 109.47320 * 330.00288 * 9 7 5 13 13 C 1.46496 * 120.00360 * 84.31062 * 4 3 2 14 14 C 1.53004 * 109.47100 * 270.00013 * 13 4 3 15 15 H 1.09004 * 109.46966 * 59.99788 * 14 13 4 16 16 O 1.42901 * 109.46946 * 299.99434 * 14 13 4 17 17 C 1.53005 * 109.46933 * 179.97438 * 14 13 4 18 18 N 1.46901 * 109.46686 * 185.00122 * 17 14 13 19 19 C 1.47013 * 111.00067 * 66.31993 * 18 17 14 20 20 C 1.53097 * 109.25441 * 182.34705 * 19 18 17 21 21 O 1.43016 * 109.29841 * 303.21988 * 20 19 18 22 22 C 1.43011 * 113.73907 * 58.64378 * 21 20 19 23 23 C 1.47014 * 110.99904 * 190.00090 * 18 17 14 24 24 H 1.09002 * 109.46678 * 127.92896 * 3 2 1 25 25 H 1.08996 * 109.47184 * 7.92729 * 3 2 1 26 26 H 0.96998 * 119.99761 * 179.97438 * 8 7 5 27 27 H 1.08996 * 109.47783 * 149.99600 * 13 4 3 28 28 H 1.09007 * 109.47051 * 29.99455 * 13 4 3 29 29 H 0.96698 * 114.00152 * 300.00124 * 16 14 13 30 30 H 1.09000 * 109.47273 * 65.00246 * 17 14 13 31 31 H 1.09002 * 109.47279 * 304.99993 * 17 14 13 32 32 H 1.08996 * 109.47146 * 62.43685 * 19 18 17 33 33 H 1.09001 * 109.54396 * 302.30501 * 19 18 17 34 34 H 1.09002 * 109.50606 * 183.25657 * 20 19 18 35 35 H 1.09001 * 109.50908 * 63.17790 * 20 19 18 36 36 H 1.09006 * 109.50104 * 61.26693 * 22 21 20 37 37 H 1.08996 * 109.50614 * 181.35194 * 22 21 20 38 38 H 1.09007 * 109.50595 * 57.66791 * 23 18 17 39 39 H 1.09006 * 109.50418 * 297.54291 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0961 0.5199 1.2799 5 6 3.4346 1.8415 1.3984 6 1 4.0442 2.1707 2.2269 7 6 2.9943 2.7582 0.4535 8 7 1.9376 2.4877 -0.2832 9 14 3.9012 4.3754 0.2276 10 1 4.9653 4.2077 -0.7947 11 1 2.9458 5.4206 -0.2195 12 1 4.5139 4.7838 1.5172 13 6 3.2221 -0.3746 2.4332 14 6 1.9124 -0.3742 3.2244 15 1 1.1009 -0.7194 2.5837 16 8 1.6304 0.9511 3.6782 17 6 2.0438 -1.3090 4.4285 18 7 0.7509 -1.4017 5.1197 19 6 -0.2515 -2.0675 4.2750 20 6 -1.5950 -2.0903 5.0087 21 8 -1.4326 -2.7404 6.2722 22 6 -0.4643 -2.1170 7.1202 23 6 0.8909 -2.0953 6.4083 24 1 2.9710 0.6325 -0.8106 25 1 2.9718 -1.0170 -0.1417 26 1 1.6297 3.1284 -0.9432 27 1 4.0336 -0.0295 3.0738 28 1 3.4372 -1.3856 2.0871 29 1 2.3120 1.3229 4.2545 30 1 2.7947 -0.9155 5.1137 31 1 2.3459 -2.2995 4.0884 32 1 0.0680 -3.0889 4.0687 33 1 -0.3581 -1.5223 3.3372 34 1 -2.3268 -2.6338 4.4111 35 1 -1.9408 -1.0688 5.1668 36 1 -0.7765 -1.0959 7.3397 37 1 -0.3789 -2.6794 8.0499 38 1 1.6187 -1.5702 7.0271 39 1 1.2283 -3.1175 6.2367 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380044035.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:04 Heat of formation + Delta-G solvation = -53.625718 kcal Electronic energy + Delta-G solvation = -21558.169681 eV Core-core repulsion = 18308.288794 eV Total energy + Delta-G solvation = -3249.880887 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.65572 -39.04122 -37.46389 -36.22479 -35.75181 -33.29113 -32.20722 -31.17802 -29.08631 -28.16415 -25.86870 -25.07279 -23.41124 -22.01300 -21.35671 -19.30403 -18.04813 -17.59229 -17.26964 -16.95961 -16.71183 -16.39729 -16.05277 -15.92819 -15.62713 -15.30438 -15.00845 -14.72082 -14.39243 -13.90667 -13.47110 -13.38357 -13.12781 -13.08487 -12.88232 -12.69972 -12.45748 -12.31384 -12.29575 -11.89702 -11.87256 -11.71021 -11.59191 -11.50046 -10.96169 -10.65493 -10.39825 -9.30439 -8.90623 -7.83395 -5.18050 1.55190 1.57847 1.64395 2.34565 2.56519 2.66290 2.71636 2.90699 3.37561 3.64389 3.83263 3.91087 3.95993 3.99469 4.02925 4.12270 4.25335 4.31996 4.40367 4.56146 4.61171 4.62443 4.68413 4.74458 4.76763 4.87069 4.94586 4.98031 5.08839 5.29970 5.36732 5.76511 5.93292 6.03399 6.12433 6.32881 7.10458 7.23581 7.39140 7.85896 8.25048 9.24163 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.027419 B = 0.005046 C = 0.004736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.938726 B = 5547.812599 C = 5910.611274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C 0.260 3.740 3 C 0.253 3.747 4 N -0.582 5.582 5 C -0.233 4.233 6 H 0.086 0.914 7 C -0.050 4.050 8 N -0.934 5.934 9 Si 0.961 3.039 10 H -0.283 1.283 11 H -0.316 1.316 12 H -0.270 1.270 13 C 0.111 3.889 14 C 0.093 3.907 15 H 0.051 0.949 16 O -0.558 6.558 17 C 0.035 3.965 18 N -0.544 5.544 19 C 0.023 3.977 20 C 0.068 3.932 21 O -0.400 6.400 22 C 0.059 3.941 23 C 0.020 3.980 24 H 0.095 0.905 25 H 0.107 0.893 26 H 0.243 0.757 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.370 0.630 30 H 0.097 0.903 31 H 0.051 0.949 32 H 0.043 0.957 33 H 0.061 0.939 34 H 0.108 0.892 35 H 0.048 0.952 36 H 0.053 0.947 37 H 0.123 0.877 38 H 0.103 0.897 39 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.269 -11.474 12.158 17.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.233 5.233 2 C -0.058 4.058 3 C 0.123 3.877 4 N -0.302 5.302 5 C -0.363 4.363 6 H 0.104 0.896 7 C -0.245 4.245 8 N -0.581 5.581 9 Si 0.792 3.208 10 H -0.210 1.210 11 H -0.245 1.245 12 H -0.195 1.195 13 C -0.015 4.015 14 C 0.031 3.969 15 H 0.069 0.931 16 O -0.363 6.363 17 C -0.094 4.094 18 N -0.270 5.270 19 C -0.105 4.105 20 C -0.009 4.009 21 O -0.319 6.319 22 C -0.018 4.018 23 C -0.108 4.108 24 H 0.113 0.887 25 H 0.125 0.875 26 H 0.052 0.948 27 H 0.095 0.905 28 H 0.099 0.901 29 H 0.216 0.784 30 H 0.115 0.885 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.126 0.874 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.141 0.859 38 H 0.121 0.879 39 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.788 -11.147 11.859 16.373 hybrid contribution 1.046 0.940 -0.510 1.496 sum 2.834 -10.207 11.349 15.524 Atomic orbital electron populations 1.80795 1.15935 1.15023 1.11522 1.31215 0.97004 0.87620 0.89978 1.18640 0.78772 0.99438 0.90871 1.44331 1.73163 1.06767 1.05897 1.19471 1.23460 0.84115 1.09252 0.89581 1.25432 0.97099 1.00557 1.01377 1.70077 1.23421 1.37156 1.27458 0.85353 0.77513 0.79893 0.78089 1.21021 1.24464 1.19520 1.21903 0.95343 0.95045 0.89208 1.22595 0.98770 0.82403 0.93166 0.93120 1.86685 1.49374 1.30322 1.69875 1.22840 0.90683 0.99229 0.96644 1.62103 1.08492 1.51864 1.04503 1.22665 0.93932 0.96992 0.96927 1.22616 0.95891 0.97816 0.84583 1.87931 1.60989 1.55143 1.27846 1.22860 0.86717 0.98669 0.93528 1.22853 0.99171 0.97570 0.91177 0.88681 0.87535 0.94751 0.90527 0.90117 0.78355 0.88489 0.93041 0.93857 0.92077 0.87353 0.93369 0.92853 0.85913 0.87920 0.93839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 -28.93 18.54 20.01 0.37 -28.56 16 2 C 0.26 12.42 12.60 89.44 1.13 13.55 16 3 C 0.25 10.30 5.45 84.58 0.46 10.76 16 4 N -0.58 -23.99 2.45 -712.56 -1.75 -25.74 16 5 C -0.23 -10.96 9.01 84.04 0.76 -10.20 16 6 H 0.09 3.87 7.90 -2.91 -0.02 3.84 16 7 C -0.05 -2.57 4.85 84.86 0.41 -2.15 16 8 N -0.93 -52.36 9.50 21.65 0.21 -52.16 16 9 Si 0.96 42.73 29.61 68.60 2.03 44.76 16 10 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.32 -15.15 7.11 99.48 0.71 -14.44 16 12 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 13 C 0.11 3.50 5.41 86.38 0.47 3.96 16 14 C 0.09 3.12 3.06 30.60 0.09 3.21 16 15 H 0.05 2.09 5.37 -2.38 -0.01 2.08 16 16 O -0.56 -22.44 12.56 -148.98 -1.87 -24.31 16 17 C 0.03 0.86 4.60 86.30 0.40 1.26 16 18 N -0.54 -14.66 4.67 -895.20 -4.18 -18.85 16 19 C 0.02 0.67 5.44 86.31 0.47 1.14 16 20 C 0.07 1.81 7.01 72.01 0.50 2.32 16 21 O -0.40 -10.32 10.83 -148.98 -1.61 -11.94 16 22 C 0.06 1.20 7.01 72.01 0.50 1.70 16 23 C 0.02 0.41 5.65 86.31 0.49 0.90 16 24 H 0.10 4.28 6.45 -2.39 -0.02 4.26 16 25 H 0.11 3.25 7.97 -2.39 -0.02 3.23 16 26 H 0.24 13.90 8.31 -92.71 -0.77 13.13 16 27 H 0.08 2.14 8.02 -2.39 -0.02 2.12 16 28 H 0.08 2.06 7.95 -2.38 -0.02 2.04 16 29 H 0.37 12.17 9.05 -74.06 -0.67 11.50 16 30 H 0.10 2.02 8.04 -2.39 -0.02 2.00 16 31 H 0.05 1.15 8.12 -2.39 -0.02 1.13 16 32 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.06 2.14 6.29 -2.39 -0.02 2.13 16 34 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 35 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 37 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.10 1.70 8.09 -2.38 -0.02 1.69 16 39 H 0.04 0.85 8.14 -2.38 -0.02 0.84 16 Total: -1.00 -68.39 319.97 -0.74 -69.13 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: 0.38 Total: 21.21 kcal Atomic # 6 Polarization: 20.76 SS G_CDS: 5.68 Total: 26.44 kcal Atomic # 7 Polarization: -119.95 SS G_CDS: -5.35 Total: -125.30 kcal Atomic # 8 Polarization: -32.76 SS G_CDS: -3.48 Total: -36.25 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -68.39 -0.74 -69.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380044035.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.508 kcal (2) G-P(sol) polarization free energy of solvation -68.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds