Wall clock time and date at job start Mon Mar 30 2020 04:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47096 * 2 1 4 4 C 1.50701 * 109.46786 * 240.00300 * 2 1 3 5 5 H 1.08000 * 120.00646 * 274.99723 * 4 2 1 6 6 C 1.37881 * 120.00014 * 94.99530 * 4 2 1 7 7 N 1.31513 * 120.00267 * 184.91500 * 6 4 2 8 8 Si 1.86802 * 119.99712 * 4.91502 * 6 4 2 9 9 H 1.48498 * 109.47034 * 84.83142 * 8 6 4 10 10 H 1.48499 * 109.47276 * 204.82859 * 8 6 4 11 11 H 1.48497 * 109.47186 * 324.83212 * 8 6 4 12 12 N 1.46903 * 109.47334 * 120.00855 * 2 1 3 13 13 C 1.46900 * 110.99648 * 274.99676 * 12 2 1 14 14 C 1.50702 * 109.47436 * 179.97438 * 13 12 2 15 15 N 1.29029 * 124.91447 * 90.01921 * 14 13 12 16 16 C 1.31779 * 117.12389 * 180.02562 * 15 14 13 17 17 C 1.33638 * 114.50138 * 0.02562 * 16 15 14 18 18 C 1.50699 * 126.04083 * 179.73456 * 17 16 15 19 19 N 1.46898 * 109.47176 * 89.99952 * 18 17 16 20 20 C 1.46901 * 110.99587 * 66.04647 * 19 18 17 21 21 C 1.46891 * 111.00291 * 190.00315 * 19 18 17 22 22 S 1.70973 * 124.91740 * 270.02845 * 14 13 12 23 23 H 1.09002 * 109.46537 * 295.03702 * 1 2 3 24 24 H 1.08995 * 109.47600 * 55.03744 * 1 2 3 25 25 H 1.09003 * 109.47379 * 175.04265 * 1 2 3 26 26 H 0.96996 * 119.99927 * 180.02562 * 7 6 4 27 27 H 1.00899 * 111.00314 * 38.94739 * 12 2 1 28 28 H 1.09006 * 109.47442 * 59.99847 * 13 12 2 29 29 H 1.09001 * 109.47572 * 300.00225 * 13 12 2 30 30 H 1.07994 * 122.74920 * 180.02562 * 16 15 14 31 31 H 1.09001 * 109.47356 * 210.00137 * 18 17 16 32 32 H 1.09001 * 109.46544 * 330.00171 * 18 17 16 33 33 H 1.08999 * 109.47327 * 60.00835 * 20 19 18 34 34 H 1.09001 * 109.46721 * 180.02562 * 20 19 18 35 35 H 1.08995 * 109.47388 * 299.99844 * 20 19 18 36 36 H 1.08999 * 109.47463 * 59.99878 * 21 19 18 37 37 H 1.08998 * 109.47468 * 179.97438 * 21 19 18 38 38 H 1.09009 * 109.47082 * 300.00125 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1355 -1.7854 -1.2293 6 6 2.3601 0.0122 -2.3582 7 7 2.7057 -0.6130 -3.4624 8 14 2.3132 1.8792 -2.3174 9 1 3.5988 2.3950 -1.7822 10 1 2.1054 2.3993 -3.6927 11 1 1.1984 2.3275 -1.4449 12 7 2.0197 -0.6927 1.1993 13 6 2.0826 0.2223 2.3468 14 6 2.5875 -0.5221 3.5560 15 7 3.8288 -0.6314 3.8908 16 6 4.0985 -1.3200 4.9815 17 6 3.0250 -1.8197 5.6011 18 6 3.0333 -2.6480 6.8600 19 7 2.9374 -1.7633 8.0288 20 6 1.6367 -1.0816 8.0676 21 6 3.1797 -2.5062 9.2726 22 16 1.5985 -1.3443 4.6825 23 1 -0.3632 0.4349 0.9311 24 1 -0.3634 0.5888 -0.8421 25 1 -0.3634 -1.0238 -0.0888 26 1 2.9366 -0.1046 -4.2555 27 1 1.4496 -1.4981 1.4099 28 1 1.0872 0.6161 2.5526 29 1 2.7589 1.0460 2.1183 30 1 5.1045 -1.4683 5.3450 31 1 2.1842 -3.3314 6.8509 32 1 3.9597 -3.2200 6.9123 33 1 0.8395 -1.8228 8.1240 34 1 1.5926 -0.4328 8.9424 35 1 1.5132 -0.4830 7.1651 36 1 4.1778 -2.9434 9.2462 37 1 3.1031 -1.8275 10.1221 38 1 2.4383 -3.2991 9.3726 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381339594.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:33 Heat of formation + Delta-G solvation = 55.263694 kcal Electronic energy + Delta-G solvation = -17941.311398 eV Core-core repulsion = 15138.905181 eV Total energy + Delta-G solvation = -2802.406217 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.126 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.64627 -37.67706 -36.30208 -32.75333 -31.57870 -29.88980 -27.91736 -27.10725 -25.37200 -24.96820 -23.13730 -22.06807 -20.12448 -19.17967 -17.99664 -16.94818 -15.92076 -15.73631 -15.37509 -14.91901 -14.64816 -14.50158 -13.91145 -13.46421 -13.24008 -12.93892 -12.81681 -12.52457 -12.37131 -12.15864 -12.07505 -12.04505 -11.82774 -11.28942 -11.13224 -11.05400 -10.71624 -10.19778 -9.77330 -9.40433 -9.23093 -9.15935 -8.78025 -8.64963 -8.50693 -7.48215 -6.04882 -4.02437 0.77358 1.40208 1.83170 2.97680 3.30366 3.36917 3.38576 3.73671 4.30227 4.42796 4.62444 4.75777 4.93355 5.01063 5.01250 5.16618 5.27421 5.28203 5.35160 5.45013 5.50366 5.62060 5.64805 5.78333 5.97426 6.20083 6.27448 6.32956 6.53826 6.58722 6.64112 6.73429 7.08760 7.64178 7.86574 7.96363 8.23736 8.64365 9.03024 9.57072 11.08656 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.044422 B = 0.003656 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.172128 B = 7655.791388 C = 7776.450374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.181 3.819 3 H 0.040 0.960 4 C -0.491 4.491 5 H 0.077 0.923 6 C 0.071 3.929 7 N -0.899 5.899 8 Si 0.875 3.125 9 H -0.274 1.274 10 H -0.289 1.289 11 H -0.268 1.268 12 N -0.663 5.663 13 C 0.126 3.874 14 C 0.082 3.918 15 N -0.461 5.461 16 C 0.063 3.937 17 C -0.232 4.232 18 C 0.137 3.863 19 N -0.543 5.543 20 C 0.017 3.983 21 C 0.025 3.975 22 S 0.097 5.903 23 H 0.020 0.980 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.264 0.736 27 H 0.329 0.671 28 H 0.042 0.958 29 H 0.097 0.903 30 H 0.172 0.828 31 H 0.046 0.954 32 H 0.095 0.905 33 H 0.027 0.973 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.916 -1.829 23.897 24.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.073 3.927 3 H 0.058 0.942 4 C -0.530 4.530 5 H 0.095 0.905 6 C -0.131 4.131 7 N -0.537 5.537 8 Si 0.703 3.297 9 H -0.200 1.200 10 H -0.215 1.215 11 H -0.193 1.193 12 N -0.294 5.294 13 C -0.007 4.007 14 C -0.197 4.197 15 N -0.175 5.175 16 C -0.089 4.089 17 C -0.353 4.353 18 C 0.007 3.993 19 N -0.267 5.267 20 C -0.131 4.131 21 C -0.123 4.123 22 S 0.351 5.649 23 H 0.039 0.961 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.146 0.854 28 H 0.060 0.940 29 H 0.115 0.885 30 H 0.189 0.811 31 H 0.064 0.936 32 H 0.113 0.887 33 H 0.045 0.955 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -2.501 -1.248 23.238 23.406 hybrid contribution -0.656 0.335 0.487 0.883 sum -3.157 -0.913 23.725 23.952 Atomic orbital electron populations 1.22668 1.00747 1.00995 0.98788 1.19703 0.89513 0.94848 0.88606 0.94228 1.20817 1.42899 0.95743 0.93544 0.90516 1.24976 0.94638 0.98111 0.95377 1.69885 1.46405 1.35709 1.01714 0.86908 0.79037 0.86690 0.77091 1.19979 1.21499 1.19280 1.61000 1.58336 1.08374 1.01733 1.20644 0.98677 0.95178 0.86171 1.27244 0.90991 1.00994 1.00503 1.66303 1.18359 1.17880 1.14941 1.21713 1.00023 0.96014 0.91157 1.25612 0.95245 1.10790 1.03696 1.20374 1.02256 0.91604 0.85080 1.61997 1.32169 1.30411 1.02149 1.22515 0.88638 0.98663 1.03300 1.22390 1.01175 0.97137 0.91640 1.83872 1.12452 1.48936 1.19593 0.96103 0.92904 0.93075 0.92612 0.85420 0.93970 0.88479 0.81069 0.93561 0.88670 0.95473 0.91174 0.90890 0.91089 0.91120 0.95550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.51 9.16 37.16 0.34 -3.17 16 2 C 0.18 4.20 2.23 -68.86 -0.15 4.04 16 3 H 0.04 0.94 4.95 -51.93 -0.26 0.68 16 4 C -0.49 -13.81 9.19 -34.44 -0.32 -14.12 16 5 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 6 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 7 N -0.90 -27.58 13.96 55.43 0.77 -26.81 16 8 Si 0.88 21.50 26.99 -169.99 -4.59 16.91 16 9 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.27 -6.19 6.82 56.52 0.39 -5.80 16 12 N -0.66 -13.76 6.22 -109.21 -0.68 -14.44 16 13 C 0.13 2.21 6.06 -4.98 -0.03 2.18 16 14 C 0.08 1.33 6.90 -13.45 -0.09 1.24 16 15 N -0.46 -7.94 10.54 -11.87 -0.13 -8.07 16 16 C 0.06 0.89 11.25 -19.19 -0.22 0.67 16 17 C -0.23 -2.85 5.30 -35.92 -0.19 -3.04 16 18 C 0.14 1.30 5.50 -4.98 -0.03 1.28 16 19 N -0.54 -5.06 5.01 -252.73 -1.27 -6.32 16 20 C 0.02 0.15 9.32 60.07 0.56 0.71 16 21 C 0.02 0.17 9.57 60.06 0.57 0.74 16 22 S 0.10 1.25 21.84 -107.50 -2.35 -1.10 16 23 H 0.02 0.36 7.35 -51.93 -0.38 -0.03 16 24 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 25 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 27 H 0.33 6.38 8.47 -39.29 -0.33 6.05 16 28 H 0.04 0.66 7.36 -51.93 -0.38 0.27 16 29 H 0.10 1.78 8.06 -51.93 -0.42 1.36 16 30 H 0.17 2.02 8.06 -52.49 -0.42 1.59 16 31 H 0.05 0.42 8.12 -51.93 -0.42 0.00 16 32 H 0.10 0.78 8.06 -51.93 -0.42 0.36 16 33 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.07 0.54 8.12 -51.93 -0.42 0.11 16 35 H 0.07 0.74 6.13 -51.93 -0.32 0.42 16 36 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 37 H 0.07 0.43 8.12 -51.93 -0.42 0.00 16 38 H 0.03 0.16 8.14 -51.92 -0.42 -0.26 16 LS Contribution 325.42 15.07 4.90 4.90 Total: -1.00 -31.52 325.42 -8.86 -40.38 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -5.88 Total: 2.07 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: 0.35 Total: -7.52 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: -1.30 Total: -55.64 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.59 Total: 16.91 kcal Atomic # 16 Polarization: 1.25 SS G_CDS: -2.35 Total: -1.10 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.52 -8.86 -40.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381339594.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.647 kcal (2) G-P(sol) polarization free energy of solvation -31.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds