Wall clock time and date at job start Mon Mar 30 2020 04:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47096 * 2 1 4 4 C 1.50701 * 109.46786 * 240.00300 * 2 1 3 5 5 H 1.08000 * 120.00646 * 274.99723 * 4 2 1 6 6 C 1.37881 * 120.00014 * 94.99530 * 4 2 1 7 7 N 1.31513 * 120.00267 * 184.91500 * 6 4 2 8 8 Si 1.86802 * 119.99712 * 4.91502 * 6 4 2 9 9 H 1.48498 * 109.47034 * 84.83142 * 8 6 4 10 10 H 1.48499 * 109.47276 * 204.82859 * 8 6 4 11 11 H 1.48497 * 109.47186 * 324.83212 * 8 6 4 12 12 N 1.46903 * 109.47334 * 120.00855 * 2 1 3 13 13 C 1.46900 * 110.99648 * 274.99676 * 12 2 1 14 14 C 1.50702 * 109.47436 * 179.97438 * 13 12 2 15 15 N 1.29029 * 124.91447 * 90.01921 * 14 13 12 16 16 C 1.31779 * 117.12389 * 180.02562 * 15 14 13 17 17 C 1.33638 * 114.50138 * 0.02562 * 16 15 14 18 18 C 1.50699 * 126.04083 * 179.73456 * 17 16 15 19 19 N 1.46898 * 109.47176 * 89.99952 * 18 17 16 20 20 C 1.46901 * 110.99587 * 66.04647 * 19 18 17 21 21 C 1.46891 * 111.00291 * 190.00315 * 19 18 17 22 22 S 1.70973 * 124.91740 * 270.02845 * 14 13 12 23 23 H 1.09002 * 109.46537 * 295.03702 * 1 2 3 24 24 H 1.08995 * 109.47600 * 55.03744 * 1 2 3 25 25 H 1.09003 * 109.47379 * 175.04265 * 1 2 3 26 26 H 0.96996 * 119.99927 * 180.02562 * 7 6 4 27 27 H 1.00899 * 111.00314 * 38.94739 * 12 2 1 28 28 H 1.09006 * 109.47442 * 59.99847 * 13 12 2 29 29 H 1.09001 * 109.47572 * 300.00225 * 13 12 2 30 30 H 1.07994 * 122.74920 * 180.02562 * 16 15 14 31 31 H 1.09001 * 109.47356 * 210.00137 * 18 17 16 32 32 H 1.09001 * 109.46544 * 330.00171 * 18 17 16 33 33 H 1.08999 * 109.47327 * 60.00835 * 20 19 18 34 34 H 1.09001 * 109.46721 * 180.02562 * 20 19 18 35 35 H 1.08995 * 109.47388 * 299.99844 * 20 19 18 36 36 H 1.08999 * 109.47463 * 59.99878 * 21 19 18 37 37 H 1.08998 * 109.47468 * 179.97438 * 21 19 18 38 38 H 1.09009 * 109.47082 * 300.00125 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1355 -1.7854 -1.2293 6 6 2.3601 0.0122 -2.3582 7 7 2.7057 -0.6130 -3.4624 8 14 2.3132 1.8792 -2.3174 9 1 3.5988 2.3950 -1.7822 10 1 2.1054 2.3993 -3.6927 11 1 1.1984 2.3275 -1.4449 12 7 2.0197 -0.6927 1.1993 13 6 2.0826 0.2223 2.3468 14 6 2.5875 -0.5221 3.5560 15 7 3.8288 -0.6314 3.8908 16 6 4.0985 -1.3200 4.9815 17 6 3.0250 -1.8197 5.6011 18 6 3.0333 -2.6480 6.8600 19 7 2.9374 -1.7633 8.0288 20 6 1.6367 -1.0816 8.0676 21 6 3.1797 -2.5062 9.2726 22 16 1.5985 -1.3443 4.6825 23 1 -0.3632 0.4349 0.9311 24 1 -0.3634 0.5888 -0.8421 25 1 -0.3634 -1.0238 -0.0888 26 1 2.9366 -0.1046 -4.2555 27 1 1.4496 -1.4981 1.4099 28 1 1.0872 0.6161 2.5526 29 1 2.7589 1.0460 2.1183 30 1 5.1045 -1.4683 5.3450 31 1 2.1842 -3.3314 6.8509 32 1 3.9597 -3.2200 6.9123 33 1 0.8395 -1.8228 8.1240 34 1 1.5926 -0.4328 8.9424 35 1 1.5132 -0.4830 7.1651 36 1 4.1778 -2.9434 9.2462 37 1 3.1031 -1.8275 10.1221 38 1 2.4383 -3.2991 9.3726 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381339594.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:32 Heat of formation + Delta-G solvation = 30.948020 kcal Electronic energy + Delta-G solvation = -17942.365805 eV Core-core repulsion = 15138.905181 eV Total energy + Delta-G solvation = -2803.460624 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.74610 -38.48186 -37.87319 -34.65261 -32.96198 -31.26828 -28.51399 -28.32162 -27.24336 -26.16529 -24.30366 -22.85491 -21.95447 -20.34587 -19.22080 -18.81388 -16.90519 -16.72193 -16.45412 -16.10510 -16.02587 -15.59189 -15.42126 -14.86567 -14.55535 -14.45970 -13.94934 -13.77998 -13.59145 -13.34783 -13.05958 -12.92102 -12.85068 -12.67376 -12.58446 -12.51454 -12.06769 -12.00878 -11.76504 -11.22084 -10.70631 -10.52346 -10.23693 -9.81671 -9.35042 -9.07579 -8.25527 -6.27884 -0.31467 0.35343 0.75126 1.35458 1.38795 1.46835 1.86634 2.36444 3.02225 3.07937 3.20487 3.68237 3.79100 4.04124 4.11798 4.29122 4.34106 4.41137 4.43476 4.56093 4.65678 4.67102 4.70839 4.72392 4.78600 4.83709 4.98163 5.04971 5.05061 5.21735 5.44147 5.67027 5.92782 5.98979 6.02839 6.60392 6.64612 6.77178 6.86444 7.35821 8.92087 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.044422 B = 0.003656 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.172128 B = 7655.791388 C = 7776.450374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.185 3.815 3 H 0.039 0.961 4 C -0.497 4.497 5 H 0.030 0.970 6 C 0.008 3.992 7 N -0.952 5.952 8 Si 0.942 3.058 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.239 1.239 12 N -0.682 5.682 13 C 0.131 3.869 14 C 0.044 3.956 15 N -0.494 5.494 16 C 0.039 3.961 17 C -0.215 4.215 18 C 0.136 3.864 19 N -0.558 5.558 20 C 0.016 3.984 21 C 0.025 3.975 22 S 0.148 5.852 23 H 0.057 0.943 24 H 0.046 0.954 25 H 0.049 0.951 26 H 0.265 0.735 27 H 0.335 0.665 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.188 0.812 31 H 0.056 0.944 32 H 0.111 0.889 33 H 0.034 0.966 34 H 0.080 0.920 35 H 0.057 0.943 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.050 -1.056 26.800 27.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.076 3.924 3 H 0.057 0.943 4 C -0.536 4.536 5 H 0.048 0.952 6 C -0.188 4.188 7 N -0.593 5.593 8 Si 0.766 3.234 9 H -0.199 1.199 10 H -0.213 1.213 11 H -0.162 1.162 12 N -0.314 5.314 13 C -0.001 4.001 14 C -0.234 4.234 15 N -0.209 5.209 16 C -0.113 4.113 17 C -0.336 4.336 18 C 0.006 3.994 19 N -0.282 5.282 20 C -0.132 4.132 21 C -0.122 4.122 22 S 0.403 5.597 23 H 0.076 0.924 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.153 0.847 28 H 0.086 0.914 29 H 0.101 0.899 30 H 0.205 0.795 31 H 0.074 0.926 32 H 0.129 0.871 33 H 0.053 0.947 34 H 0.099 0.901 35 H 0.075 0.925 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -3.657 -0.478 26.175 26.434 hybrid contribution -0.286 -0.067 -0.245 0.383 sum -3.943 -0.546 25.930 26.234 Atomic orbital electron populations 1.22497 0.98178 1.01290 1.00482 1.19517 0.91271 0.94012 0.87597 0.94279 1.21128 1.42460 0.94001 0.96010 0.95170 1.25879 0.94494 1.03629 0.94828 1.70050 1.48617 1.37898 1.02695 0.85829 0.79910 0.80016 0.77644 1.19902 1.21253 1.16192 1.60660 1.58845 1.09319 1.02559 1.20530 0.99753 0.94270 0.85536 1.26967 0.91799 1.03084 1.01550 1.66263 1.19455 1.18817 1.16390 1.21962 1.01377 0.96855 0.91075 1.26059 0.94577 1.09074 1.03934 1.20500 1.03553 0.91318 0.84021 1.61981 1.32454 1.30930 1.02870 1.22521 0.88817 0.98865 1.03015 1.22445 1.01873 0.97336 0.90594 1.83599 1.11330 1.47135 1.17667 0.92386 0.93490 0.93216 0.92604 0.84744 0.91429 0.89873 0.79544 0.92639 0.87064 0.94721 0.90113 0.92464 0.90289 0.90377 0.94782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.36 9.16 71.98 0.66 -5.70 16 2 C 0.18 8.42 2.23 44.17 0.10 8.52 16 3 H 0.04 1.79 4.95 -2.39 -0.01 1.78 16 4 C -0.50 -28.69 9.19 25.60 0.24 -28.45 16 5 H 0.03 1.96 8.06 -2.91 -0.02 1.94 16 6 C 0.01 0.50 5.47 84.66 0.46 0.96 16 7 N -0.95 -60.49 13.96 21.45 0.30 -60.19 16 8 Si 0.94 44.41 26.99 68.60 1.85 46.26 16 9 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 10 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 11 H -0.24 -10.04 6.82 99.48 0.68 -9.36 16 12 N -0.68 -28.04 6.22 -499.44 -3.11 -31.14 16 13 C 0.13 4.44 6.06 85.56 0.52 4.96 16 14 C 0.04 1.38 6.90 88.52 0.61 1.99 16 15 N -0.49 -16.81 10.54 -191.45 -2.02 -18.83 16 16 C 0.04 1.04 11.25 83.66 0.94 1.99 16 17 C -0.21 -4.84 5.30 24.64 0.13 -4.71 16 18 C 0.14 2.21 5.50 85.56 0.47 2.68 16 19 N -0.56 -8.82 5.01 -953.50 -4.78 -13.60 16 20 C 0.02 0.24 9.32 127.69 1.19 1.43 16 21 C 0.02 0.26 9.57 127.69 1.22 1.48 16 22 S 0.15 3.52 21.84 -56.49 -1.23 2.28 16 23 H 0.06 1.80 7.35 -2.39 -0.02 1.79 16 24 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 27 H 0.33 12.84 8.47 -89.69 -0.76 12.08 16 28 H 0.07 1.91 7.36 -2.38 -0.02 1.89 16 29 H 0.08 3.00 8.06 -2.39 -0.02 2.98 16 30 H 0.19 4.18 8.06 -2.91 -0.02 4.16 16 31 H 0.06 0.82 8.12 -2.39 -0.02 0.80 16 32 H 0.11 1.48 8.06 -2.39 -0.02 1.46 16 33 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.08 1.03 8.12 -2.39 -0.02 1.01 16 35 H 0.06 1.03 6.13 -2.39 -0.01 1.02 16 36 H 0.08 0.71 8.12 -2.39 -0.02 0.69 16 37 H 0.08 0.71 8.12 -2.39 -0.02 0.69 16 38 H 0.03 0.31 8.14 -2.38 -0.02 0.29 16 Total: -1.00 -70.19 325.42 -2.19 -72.37 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: 0.26 Total: 17.70 kcal Atomic # 6 Polarization: -21.39 SS G_CDS: 6.54 Total: -14.85 kcal Atomic # 7 Polarization: -114.16 SS G_CDS: -9.60 Total: -123.76 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.85 Total: 46.26 kcal Atomic # 16 Polarization: 3.52 SS G_CDS: -1.23 Total: 2.28 kcal Total: -70.19 -2.19 -72.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381339594.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.320 kcal (2) G-P(sol) polarization free energy of solvation -70.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds