Wall clock time and date at job start Mon Mar 30 2020 04:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47073 * 2 1 4 4 C 1.50702 * 109.46633 * 119.99678 * 2 1 3 5 5 H 1.08002 * 119.99527 * 120.00186 * 4 2 1 6 6 C 1.37880 * 120.00428 * 299.99821 * 4 2 1 7 7 N 1.31515 * 119.99330 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99974 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47064 * 90.00359 * 8 6 4 10 10 H 1.48509 * 109.46901 * 209.99899 * 8 6 4 11 11 H 1.48500 * 109.47317 * 330.00073 * 8 6 4 12 12 N 1.46897 * 109.47137 * 239.99533 * 2 1 3 13 13 C 1.46896 * 110.99697 * 85.00270 * 12 2 1 14 14 C 1.50706 * 109.47115 * 179.97438 * 13 12 2 15 15 N 1.29026 * 124.91499 * 89.97570 * 14 13 12 16 16 C 1.31781 * 117.12417 * 180.02562 * 15 14 13 17 17 C 1.33644 * 114.49886 * 359.97438 * 16 15 14 18 18 C 1.50706 * 126.03326 * 179.73827 * 17 16 15 19 19 N 1.46903 * 109.46921 * 90.00792 * 18 17 16 20 20 C 1.46897 * 110.99986 * 66.04044 * 19 18 17 21 21 C 1.46901 * 110.99562 * 189.99913 * 19 18 17 22 22 S 1.70976 * 124.91718 * 269.97647 * 14 13 12 23 23 H 1.09007 * 109.47101 * 300.00276 * 1 2 3 24 24 H 1.09002 * 109.47287 * 59.99885 * 1 2 3 25 25 H 1.08999 * 109.47679 * 180.02562 * 1 2 3 26 26 H 0.97009 * 119.99410 * 180.02562 * 7 6 4 27 27 H 1.00896 * 111.00149 * 321.04819 * 12 2 1 28 28 H 1.09003 * 109.47115 * 60.00320 * 13 12 2 29 29 H 1.08997 * 109.47668 * 299.99844 * 13 12 2 30 30 H 1.07999 * 122.75333 * 179.97438 * 16 15 14 31 31 H 1.09006 * 109.46788 * 210.00009 * 18 17 16 32 32 H 1.08994 * 109.47059 * 330.00264 * 18 17 16 33 33 H 1.08998 * 109.47151 * 60.00392 * 20 19 18 34 34 H 1.09004 * 109.46372 * 180.02562 * 20 19 18 35 35 H 1.08991 * 109.47501 * 299.99591 * 20 19 18 36 36 H 1.08995 * 109.47406 * 60.00110 * 21 19 18 37 37 H 1.09005 * 109.46516 * 179.97438 * 21 19 18 38 38 H 1.08995 * 109.46894 * 299.99153 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 1.2306 5 1 2.6531 -1.5885 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 0.9427 0.8298 2.6033 8 14 2.3223 -1.1195 4.0080 9 1 3.6303 -0.5439 4.4120 10 1 1.3442 -0.9488 5.1124 11 1 2.4878 -2.5653 3.7123 12 7 2.0196 -0.6926 -1.1993 13 6 2.0825 0.2225 -2.3468 14 6 2.5885 -0.5217 -3.5556 15 7 1.8430 -1.1426 -4.4062 16 6 2.4492 -1.7445 -5.4096 17 6 3.7802 -1.6241 -5.4055 18 6 4.7266 -2.2107 -6.4212 19 7 4.9323 -1.2482 -7.5118 20 6 5.6337 -0.0502 -7.0313 21 6 5.6542 -1.8676 -8.6312 22 16 4.2337 -0.6654 -3.9985 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 0.7086 1.1615 3.4844 27 1 1.4496 -1.4980 -1.4099 28 1 2.7589 1.0460 -2.1181 29 1 1.0872 0.6162 -2.5525 30 1 1.9143 -2.2903 -6.1728 31 1 5.6821 -2.4287 -5.9440 32 1 4.3030 -3.1308 -6.8236 33 1 6.6057 -0.3352 -6.6288 34 1 5.7725 0.6457 -7.8587 35 1 5.0429 0.4280 -6.2502 36 1 5.0783 -2.7105 -9.0130 37 1 5.7926 -1.1333 -9.4249 38 1 6.6269 -2.2183 -8.2866 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381339595.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:35 Heat of formation + Delta-G solvation = 51.741506 kcal Electronic energy + Delta-G solvation = -17881.050606 eV Core-core repulsion = 15078.491655 eV Total energy + Delta-G solvation = -2802.558951 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.126 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.59457 -37.62064 -36.05214 -32.87811 -31.38124 -29.33020 -27.86906 -26.82256 -25.22136 -24.92293 -23.05894 -21.99074 -20.25253 -18.99825 -17.97645 -16.37119 -15.87005 -15.57879 -15.32041 -14.87688 -14.74615 -14.29731 -13.82540 -13.53614 -13.12286 -12.88707 -12.70364 -12.47622 -12.09525 -12.06530 -11.81957 -11.66118 -11.53260 -11.02165 -10.93249 -10.79271 -10.54662 -10.14507 -9.97245 -9.41674 -9.12388 -9.03722 -8.67514 -8.57989 -8.36984 -7.34800 -5.99488 -4.02899 0.85374 1.51712 1.98337 3.00104 3.33147 3.39244 3.43762 3.78598 4.36011 4.45704 4.68357 4.80871 4.98273 5.06316 5.21268 5.30907 5.32507 5.33057 5.39490 5.46234 5.53296 5.70750 5.76785 5.92852 6.06123 6.36181 6.63559 6.68622 6.69261 6.85320 7.06683 7.28462 7.73011 7.85092 7.96065 8.21983 8.45204 8.54842 9.03818 9.62311 11.07590 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.039501 B = 0.003511 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.674986 B = 7972.335528 C = 8249.211866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.213 3.787 3 H 0.036 0.964 4 C -0.496 4.496 5 H 0.063 0.937 6 C 0.056 3.944 7 N -0.897 5.897 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.676 5.676 13 C 0.129 3.871 14 C 0.078 3.922 15 N -0.482 5.482 16 C 0.060 3.940 17 C -0.243 4.243 18 C 0.137 3.863 19 N -0.543 5.543 20 C 0.017 3.983 21 C 0.025 3.975 22 S 0.136 5.864 23 H 0.090 0.910 24 H 0.007 0.993 25 H 0.029 0.971 26 H 0.260 0.740 27 H 0.332 0.668 28 H 0.086 0.914 29 H 0.054 0.946 30 H 0.169 0.831 31 H 0.046 0.954 32 H 0.093 0.907 33 H 0.027 0.973 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.317 -3.259 -19.309 21.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.105 3.895 3 H 0.054 0.946 4 C -0.535 4.535 5 H 0.081 0.919 6 C -0.145 4.145 7 N -0.537 5.537 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.308 5.308 13 C -0.004 4.004 14 C -0.200 4.200 15 N -0.197 5.197 16 C -0.092 4.092 17 C -0.364 4.364 18 C 0.008 3.992 19 N -0.267 5.267 20 C -0.131 4.131 21 C -0.123 4.123 22 S 0.391 5.609 23 H 0.109 0.891 24 H 0.026 0.974 25 H 0.048 0.952 26 H 0.070 0.930 27 H 0.149 0.851 28 H 0.104 0.896 29 H 0.072 0.928 30 H 0.186 0.814 31 H 0.064 0.936 32 H 0.111 0.889 33 H 0.046 0.954 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 8.810 -2.529 -18.636 20.768 hybrid contribution -0.424 -1.037 0.275 1.153 sum 8.386 -3.565 -18.361 20.498 Atomic orbital electron populations 1.22440 1.00392 0.99464 1.00662 1.19215 0.89870 0.94464 0.85923 0.94614 1.21126 1.30347 1.12541 0.89443 0.91868 1.24944 0.95280 0.95222 0.99040 1.69886 1.37167 1.23201 1.23414 0.86486 0.78433 0.80034 0.82360 1.20738 1.21399 1.19919 1.60950 1.58614 1.08868 1.02346 1.20541 0.99821 0.94253 0.85756 1.27278 0.92583 1.00279 0.99910 1.66359 1.38611 1.10890 1.03794 1.21597 0.90352 1.00220 0.97056 1.25689 0.98504 1.10115 1.02135 1.20357 0.95912 0.94264 0.88716 1.62005 1.49240 1.07061 1.08442 1.22516 0.96601 0.92861 1.01164 1.22387 0.96306 0.99910 0.93737 1.83970 1.11466 1.47404 1.18024 0.89116 0.97394 0.95183 0.93017 0.85064 0.89551 0.92814 0.81355 0.93569 0.88864 0.95408 0.91188 0.90851 0.91168 0.91150 0.95554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.11 8.94 37.16 0.33 -3.78 16 2 C 0.21 5.30 2.57 -68.87 -0.18 5.12 16 3 H 0.04 0.96 7.80 -51.93 -0.40 0.55 16 4 C -0.50 -13.67 8.84 -34.44 -0.30 -13.97 16 5 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 6 C 0.06 1.54 5.30 -17.82 -0.09 1.45 16 7 N -0.90 -25.51 11.32 55.43 0.63 -24.88 16 8 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 12 N -0.68 -14.53 6.22 -109.22 -0.68 -15.21 16 13 C 0.13 2.37 6.06 -4.98 -0.03 2.34 16 14 C 0.08 1.30 6.90 -13.45 -0.09 1.21 16 15 N -0.48 -8.10 10.54 -11.86 -0.13 -8.23 16 16 C 0.06 0.85 11.25 -19.18 -0.22 0.63 16 17 C -0.24 -3.08 5.30 -35.92 -0.19 -3.27 16 18 C 0.14 1.36 5.50 -4.97 -0.03 1.34 16 19 N -0.54 -5.26 5.01 -252.72 -1.27 -6.52 16 20 C 0.02 0.16 9.32 60.06 0.56 0.72 16 21 C 0.02 0.17 9.57 60.07 0.57 0.75 16 22 S 0.14 1.91 21.85 -107.50 -2.35 -0.43 16 23 H 0.09 2.41 6.07 -51.92 -0.32 2.10 16 24 H 0.01 0.16 7.45 -51.93 -0.39 -0.23 16 25 H 0.03 0.70 8.13 -51.93 -0.42 0.28 16 26 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 27 H 0.33 7.12 8.46 -39.29 -0.33 6.79 16 28 H 0.09 1.52 8.06 -51.93 -0.42 1.10 16 29 H 0.05 1.00 7.44 -51.93 -0.39 0.62 16 30 H 0.17 1.96 8.06 -52.49 -0.42 1.53 16 31 H 0.05 0.44 8.12 -51.93 -0.42 0.02 16 32 H 0.09 0.79 8.06 -51.93 -0.42 0.37 16 33 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.07 0.57 8.12 -51.93 -0.42 0.14 16 35 H 0.07 0.79 6.14 -51.93 -0.32 0.47 16 36 H 0.07 0.44 8.12 -51.93 -0.42 0.01 16 37 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 38 H 0.03 0.17 8.14 -51.93 -0.42 -0.25 16 LS Contribution 325.91 15.07 4.91 4.91 Total: -1.00 -29.28 325.91 -9.47 -38.75 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -5.90 Total: 2.65 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: 0.33 Total: -7.47 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: -1.44 Total: -54.84 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: 1.91 SS G_CDS: -2.35 Total: -0.43 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.28 -9.47 -38.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381339595.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.494 kcal (2) G-P(sol) polarization free energy of solvation -29.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds