Wall clock time and date at job start Mon Mar 30 2020 04:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47073 * 2 1 4 4 C 1.50702 * 109.46633 * 119.99678 * 2 1 3 5 5 H 1.08002 * 119.99527 * 120.00186 * 4 2 1 6 6 C 1.37880 * 120.00428 * 299.99821 * 4 2 1 7 7 N 1.31515 * 119.99330 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99974 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47064 * 90.00359 * 8 6 4 10 10 H 1.48509 * 109.46901 * 209.99899 * 8 6 4 11 11 H 1.48500 * 109.47317 * 330.00073 * 8 6 4 12 12 N 1.46897 * 109.47137 * 239.99533 * 2 1 3 13 13 C 1.46896 * 110.99697 * 85.00270 * 12 2 1 14 14 C 1.50706 * 109.47115 * 179.97438 * 13 12 2 15 15 N 1.29026 * 124.91499 * 89.97570 * 14 13 12 16 16 C 1.31781 * 117.12417 * 180.02562 * 15 14 13 17 17 C 1.33644 * 114.49886 * 359.97438 * 16 15 14 18 18 C 1.50706 * 126.03326 * 179.73827 * 17 16 15 19 19 N 1.46903 * 109.46921 * 90.00792 * 18 17 16 20 20 C 1.46897 * 110.99986 * 66.04044 * 19 18 17 21 21 C 1.46901 * 110.99562 * 189.99913 * 19 18 17 22 22 S 1.70976 * 124.91718 * 269.97647 * 14 13 12 23 23 H 1.09007 * 109.47101 * 300.00276 * 1 2 3 24 24 H 1.09002 * 109.47287 * 59.99885 * 1 2 3 25 25 H 1.08999 * 109.47679 * 180.02562 * 1 2 3 26 26 H 0.97009 * 119.99410 * 180.02562 * 7 6 4 27 27 H 1.00896 * 111.00149 * 321.04819 * 12 2 1 28 28 H 1.09003 * 109.47115 * 60.00320 * 13 12 2 29 29 H 1.08997 * 109.47668 * 299.99844 * 13 12 2 30 30 H 1.07999 * 122.75333 * 179.97438 * 16 15 14 31 31 H 1.09006 * 109.46788 * 210.00009 * 18 17 16 32 32 H 1.08994 * 109.47059 * 330.00264 * 18 17 16 33 33 H 1.08998 * 109.47151 * 60.00392 * 20 19 18 34 34 H 1.09004 * 109.46372 * 180.02562 * 20 19 18 35 35 H 1.08991 * 109.47501 * 299.99591 * 20 19 18 36 36 H 1.08995 * 109.47406 * 60.00110 * 21 19 18 37 37 H 1.09005 * 109.46516 * 179.97438 * 21 19 18 38 38 H 1.08995 * 109.46894 * 299.99153 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 1.2306 5 1 2.6531 -1.5885 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 0.9427 0.8298 2.6033 8 14 2.3223 -1.1195 4.0080 9 1 3.6303 -0.5439 4.4120 10 1 1.3442 -0.9488 5.1124 11 1 2.4878 -2.5653 3.7123 12 7 2.0196 -0.6926 -1.1993 13 6 2.0825 0.2225 -2.3468 14 6 2.5885 -0.5217 -3.5556 15 7 1.8430 -1.1426 -4.4062 16 6 2.4492 -1.7445 -5.4096 17 6 3.7802 -1.6241 -5.4055 18 6 4.7266 -2.2107 -6.4212 19 7 4.9323 -1.2482 -7.5118 20 6 5.6337 -0.0502 -7.0313 21 6 5.6542 -1.8676 -8.6312 22 16 4.2337 -0.6654 -3.9985 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 0.7086 1.1615 3.4844 27 1 1.4496 -1.4980 -1.4099 28 1 2.7589 1.0460 -2.1181 29 1 1.0872 0.6162 -2.5525 30 1 1.9143 -2.2903 -6.1728 31 1 5.6821 -2.4287 -5.9440 32 1 4.3030 -3.1308 -6.8236 33 1 6.6057 -0.3352 -6.6288 34 1 5.7725 0.6457 -7.8587 35 1 5.0429 0.4280 -6.2502 36 1 5.0783 -2.7105 -9.0130 37 1 5.7926 -1.1333 -9.4249 38 1 6.6269 -2.2183 -8.2866 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381339595.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:35 Heat of formation + Delta-G solvation = 30.962840 kcal Electronic energy + Delta-G solvation = -17881.951636 eV Core-core repulsion = 15078.491655 eV Total energy + Delta-G solvation = -2803.459981 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.126 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.73943 -38.44688 -37.76433 -34.73969 -32.68574 -30.86700 -28.50599 -28.16627 -27.23370 -26.15422 -24.29073 -22.83223 -22.19450 -20.14969 -19.17790 -18.29278 -16.88135 -16.69637 -16.50772 -16.21062 -15.98386 -15.61137 -15.24843 -14.84096 -14.64990 -14.22393 -13.74498 -13.57335 -13.34444 -13.26711 -12.95801 -12.84828 -12.76380 -12.62050 -12.54674 -12.41594 -12.16423 -11.99965 -11.93122 -11.10718 -10.59151 -10.48301 -10.21819 -9.77905 -9.34510 -9.09946 -8.09699 -6.20837 -0.29522 0.39878 0.84590 1.44690 1.45071 1.56016 1.85773 2.45085 3.07349 3.16992 3.19172 3.74514 3.84240 4.03506 4.10078 4.30073 4.41643 4.46255 4.55771 4.58705 4.67869 4.72846 4.73573 4.84741 4.89122 4.99160 5.05675 5.06753 5.24727 5.35665 5.68329 5.78069 5.93388 6.03938 6.22745 6.54824 6.64905 6.81636 6.91287 7.48617 8.96059 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.039501 B = 0.003511 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.674986 B = 7972.335528 C = 8249.211866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.218 3.782 3 H 0.012 0.988 4 C -0.516 4.516 5 H 0.055 0.945 6 C 0.010 3.990 7 N -0.921 5.921 8 Si 0.961 3.039 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.270 1.270 12 N -0.677 5.677 13 C 0.136 3.864 14 C 0.043 3.957 15 N -0.499 5.499 16 C 0.040 3.960 17 C -0.220 4.220 18 C 0.136 3.864 19 N -0.557 5.557 20 C 0.016 3.984 21 C 0.025 3.975 22 S 0.158 5.842 23 H 0.066 0.934 24 H 0.025 0.975 25 H 0.030 0.970 26 H 0.262 0.738 27 H 0.332 0.668 28 H 0.088 0.912 29 H 0.047 0.953 30 H 0.192 0.808 31 H 0.053 0.947 32 H 0.114 0.886 33 H 0.033 0.967 34 H 0.081 0.919 35 H 0.055 0.945 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.538 -4.436 -20.659 23.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.110 3.890 3 H 0.030 0.970 4 C -0.555 4.555 5 H 0.073 0.927 6 C -0.188 4.188 7 N -0.562 5.562 8 Si 0.787 3.213 9 H -0.202 1.202 10 H -0.209 1.209 11 H -0.195 1.195 12 N -0.307 5.307 13 C 0.003 3.997 14 C -0.234 4.234 15 N -0.215 5.215 16 C -0.111 4.111 17 C -0.342 4.342 18 C 0.007 3.993 19 N -0.281 5.281 20 C -0.133 4.133 21 C -0.122 4.122 22 S 0.412 5.588 23 H 0.084 0.916 24 H 0.044 0.956 25 H 0.049 0.951 26 H 0.071 0.929 27 H 0.149 0.851 28 H 0.106 0.894 29 H 0.065 0.935 30 H 0.209 0.791 31 H 0.071 0.929 32 H 0.132 0.868 33 H 0.052 0.948 34 H 0.099 0.901 35 H 0.074 0.926 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 10.035 -3.705 -20.005 22.685 hybrid contribution -0.738 -0.676 0.548 1.141 sum 9.296 -4.382 -19.457 22.004 Atomic orbital electron populations 1.22258 0.99939 0.99275 1.00249 1.18976 0.90104 0.93108 0.86847 0.97018 1.21405 1.30609 1.12584 0.90883 0.92678 1.25700 0.95385 0.95878 1.01831 1.70006 1.37839 1.24223 1.24086 0.85504 0.77990 0.78997 0.78793 1.20167 1.20920 1.19491 1.60795 1.58133 1.09173 1.02637 1.20393 0.99761 0.93969 0.85546 1.26845 0.94238 1.02166 1.00143 1.66317 1.39844 1.10933 1.04390 1.21937 0.91067 1.00938 0.97191 1.26104 0.98636 1.07952 1.01486 1.20500 0.95614 0.94846 0.88388 1.61995 1.50187 1.07184 1.08753 1.22517 0.96465 0.93107 1.01165 1.22448 0.96524 1.00380 0.92895 1.83838 1.09295 1.47185 1.18433 0.91568 0.95630 0.95131 0.92912 0.85089 0.89390 0.93479 0.79140 0.92883 0.86809 0.94826 0.90065 0.92619 0.90125 0.90409 0.94869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.74 8.94 71.98 0.64 -7.10 16 2 C 0.22 11.09 2.57 44.17 0.11 11.20 16 3 H 0.01 0.66 7.80 -2.39 -0.02 0.64 16 4 C -0.52 -28.79 8.84 25.60 0.23 -28.57 16 5 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 6 C 0.01 0.58 5.30 84.66 0.45 1.02 16 7 N -0.92 -53.00 11.32 21.45 0.24 -52.75 16 8 Si 0.96 44.00 29.54 68.60 2.03 46.03 16 9 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 10 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 11 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 12 N -0.68 -29.47 6.22 -499.47 -3.11 -32.58 16 13 C 0.14 5.06 6.06 85.56 0.52 5.58 16 14 C 0.04 1.44 6.90 88.52 0.61 2.05 16 15 N -0.50 -16.51 10.54 -191.44 -2.02 -18.53 16 16 C 0.04 1.07 11.25 83.66 0.94 2.01 16 17 C -0.22 -5.15 5.30 24.64 0.13 -5.02 16 18 C 0.14 2.32 5.50 85.56 0.47 2.79 16 19 N -0.56 -9.26 5.01 -953.48 -4.78 -14.04 16 20 C 0.02 0.26 9.32 127.69 1.19 1.46 16 21 C 0.02 0.28 9.57 127.69 1.22 1.50 16 22 S 0.16 4.28 21.85 -56.49 -1.23 3.05 16 23 H 0.07 3.58 6.07 -2.38 -0.01 3.57 16 24 H 0.02 1.11 7.45 -2.39 -0.02 1.09 16 25 H 0.03 1.44 8.13 -2.39 -0.02 1.42 16 26 H 0.26 14.31 8.31 -92.70 -0.77 13.54 16 27 H 0.33 14.39 8.46 -89.70 -0.76 13.63 16 28 H 0.09 3.18 8.06 -2.39 -0.02 3.16 16 29 H 0.05 1.80 7.44 -2.39 -0.02 1.78 16 30 H 0.19 4.01 8.06 -2.91 -0.02 3.98 16 31 H 0.05 0.85 8.12 -2.38 -0.02 0.83 16 32 H 0.11 1.51 8.06 -2.39 -0.02 1.49 16 33 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.08 1.14 8.12 -2.39 -0.02 1.12 16 35 H 0.06 1.12 6.14 -2.39 -0.01 1.10 16 36 H 0.08 0.73 8.12 -2.39 -0.02 0.71 16 37 H 0.08 0.76 8.12 -2.38 -0.02 0.74 16 38 H 0.03 0.33 8.14 -2.39 -0.02 0.31 16 Total: -1.00 -62.14 325.91 -2.06 -64.21 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: 0.29 Total: 17.69 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: 6.52 Total: -13.08 kcal Atomic # 7 Polarization: -108.24 SS G_CDS: -9.66 Total: -117.90 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 16 Polarization: 4.28 SS G_CDS: -1.23 Total: 3.05 kcal Total: -62.14 -2.06 -64.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381339595.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.169 kcal (2) G-P(sol) polarization free energy of solvation -62.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds