Wall clock time and date at job start Mon Mar 30 2020 05:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99920 * 2 1 4 4 H 1.48496 * 109.46987 * 270.00172 * 3 2 1 5 5 H 1.48500 * 109.47073 * 29.99935 * 3 2 1 6 6 H 1.48500 * 109.47242 * 149.99919 * 3 2 1 7 7 C 1.37873 * 120.00249 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99766 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00129 * 180.02562 * 7 2 1 10 10 O 1.42902 * 109.47205 * 180.02562 * 9 7 2 11 11 C 1.42898 * 114.00186 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47319 * 180.02562 * 11 10 9 13 13 N 1.46497 * 109.47195 * 64.99855 * 12 11 10 14 14 C 1.47244 * 125.40553 * 90.00114 * 13 12 11 15 15 C 1.53645 * 103.80608 * 182.75644 * 14 13 12 16 16 H 1.09003 * 111.49806 * 113.47371 * 15 14 13 17 17 C 1.53181 * 110.80067 * 238.19690 * 15 14 13 18 18 N 1.47084 * 108.61603 * 164.85724 * 17 15 14 19 19 C 1.46729 * 112.36058 * 295.19631 * 18 17 15 20 20 C 1.53682 * 109.82428 * 63.78061 * 19 18 17 21 21 N 1.47053 * 106.98028 * 309.43677 * 20 19 18 22 22 C 1.33186 * 128.68180 * 232.20228 * 21 20 19 23 23 O 1.21586 * 123.20467 * 347.83982 * 22 21 20 24 24 H 0.97001 * 119.99927 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47017 * 60.00460 * 9 7 2 26 26 H 1.08999 * 109.47472 * 300.00137 * 9 7 2 27 27 H 1.09002 * 109.47259 * 300.00293 * 11 10 9 28 28 H 1.09001 * 109.47074 * 60.00315 * 11 10 9 29 29 H 1.09001 * 109.47630 * 185.00204 * 12 11 10 30 30 H 1.09004 * 109.47346 * 305.00335 * 12 11 10 31 31 H 1.08997 * 110.55760 * 301.33585 * 14 13 12 32 32 H 1.09000 * 110.55647 * 64.17989 * 14 13 12 33 33 H 1.08993 * 109.61514 * 284.59814 * 17 15 14 34 34 H 1.09000 * 109.61218 * 45.12243 * 17 15 14 35 35 H 1.00899 * 111.00386 * 170.24141 * 18 17 15 36 36 H 1.09006 * 109.41194 * 183.88398 * 19 18 17 37 37 H 1.08996 * 109.41594 * 303.74180 * 19 18 17 38 38 H 1.08997 * 109.95323 * 68.80860 * 20 19 18 39 39 H 1.08999 * 109.95135 * 190.07571 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 8 3.9880 -2.5412 0.0010 11 6 5.4125 -2.6541 0.0009 12 6 5.8070 -4.1323 0.0002 13 7 5.3690 -4.7540 -1.2519 14 6 6.1648 -4.8353 -2.4881 15 6 5.2164 -5.5102 -3.4910 16 1 4.9372 -4.8307 -4.2962 17 6 5.8322 -6.8021 -4.0371 18 7 4.7737 -7.5873 -4.6902 19 6 3.7483 -8.0387 -3.7427 20 6 3.0225 -6.8243 -3.1425 21 7 4.0592 -5.9013 -2.6568 22 6 4.1806 -5.3450 -1.4528 23 8 3.2979 -5.3673 -0.6169 24 1 -0.4850 0.8401 0.0004 25 1 3.8745 -0.6800 0.8912 26 1 3.8753 -0.6803 -0.8888 27 1 5.8153 -2.1704 -0.8890 28 1 5.8153 -2.1706 0.8910 29 1 6.8899 -4.2195 0.0897 30 1 5.3312 -4.6358 0.8417 31 1 6.4397 -3.8384 -2.8326 32 1 7.0539 -5.4460 -2.3314 33 1 6.6082 -6.5593 -4.7629 34 1 6.2617 -7.3779 -3.2173 35 1 5.1632 -8.3662 -5.1996 36 1 3.0280 -8.6708 -4.2623 37 1 4.2201 -8.6092 -2.9428 38 1 2.4187 -6.3363 -3.9075 39 1 2.3894 -7.1416 -2.3139 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385401558.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:17 Heat of formation + Delta-G solvation = -34.038189 kcal Electronic energy + Delta-G solvation = -21431.806460 eV Core-core repulsion = 18182.774952 eV Total energy + Delta-G solvation = -3249.031508 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.09805 -37.63251 -36.74913 -35.61648 -33.60019 -32.53368 -31.83056 -29.29769 -27.81180 -27.43150 -24.87903 -23.05114 -22.38058 -21.71501 -20.85098 -19.32147 -16.93917 -16.86565 -16.67063 -16.04601 -15.62521 -15.30311 -15.16626 -14.83224 -14.37529 -14.27104 -14.01816 -13.61521 -13.39252 -13.05109 -12.66442 -12.38188 -12.20079 -12.14735 -11.71363 -11.44417 -11.36912 -11.29954 -10.91799 -10.75034 -10.63847 -9.77857 -9.59995 -9.05500 -9.03645 -8.74851 -8.56257 -8.36235 -8.18083 -6.00659 -3.98447 2.57516 3.29554 3.35830 3.37824 3.57199 3.79432 3.86918 4.43240 4.49330 4.53605 4.63421 4.71852 4.93263 5.05015 5.10399 5.24036 5.26035 5.29533 5.41483 5.45562 5.53732 5.59394 5.70978 5.79367 5.90404 5.93319 6.11444 6.30076 6.60347 6.66401 6.91173 6.97597 7.08192 7.14723 7.70466 7.92643 8.15241 8.79648 9.03053 9.16524 9.58922 11.12822 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.025913 B = 0.004768 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.277837 B = 5871.643336 C = 6320.763700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.071 3.929 3 Si 0.875 3.125 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.511 4.511 8 H 0.084 0.916 9 C 0.169 3.831 10 O -0.361 6.361 11 C 0.036 3.964 12 C 0.158 3.842 13 N -0.632 5.632 14 C 0.099 3.901 15 C 0.123 3.877 16 H 0.098 0.902 17 C 0.055 3.945 18 N -0.693 5.693 19 C 0.044 3.956 20 C 0.157 3.843 21 N -0.636 5.636 22 C 0.705 3.295 23 O -0.554 6.554 24 H 0.265 0.735 25 H 0.000 1.000 26 H -0.007 1.007 27 H 0.036 0.964 28 H 0.047 0.953 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.039 0.961 35 H 0.346 0.654 36 H 0.088 0.912 37 H 0.034 0.966 38 H 0.075 0.925 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.204 -14.921 -9.564 24.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.131 4.131 3 Si 0.702 3.298 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.549 4.549 8 H 0.102 0.898 9 C 0.094 3.906 10 O -0.279 6.279 11 C -0.043 4.043 12 C 0.036 3.964 13 N -0.371 5.371 14 C -0.025 4.025 15 C 0.018 3.982 16 H 0.116 0.884 17 C -0.075 4.075 18 N -0.325 5.325 19 C -0.086 4.086 20 C 0.035 3.965 21 N -0.376 5.376 22 C 0.407 3.593 23 O -0.428 6.428 24 H 0.075 0.925 25 H 0.018 0.982 26 H 0.011 0.989 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.104 0.896 30 H 0.108 0.892 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.057 0.943 35 H 0.165 0.835 36 H 0.106 0.894 37 H 0.053 0.947 38 H 0.094 0.906 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 15.959 -14.424 -9.156 23.379 hybrid contribution 1.180 0.652 0.236 1.369 sum 17.139 -13.772 -8.919 23.727 Atomic orbital electron populations 1.69893 1.06022 1.26823 1.50871 1.24774 0.94783 0.98576 0.94926 0.86861 0.80341 0.83966 0.78600 1.20089 1.20823 1.19209 1.20931 0.88334 0.95367 1.50308 0.89829 1.20572 0.96314 0.79883 0.93854 1.88127 1.16294 1.28652 1.94837 1.22815 0.86420 0.95862 0.99220 1.21246 0.98380 0.92243 0.84542 1.47147 1.15936 1.61583 1.12432 1.22239 0.94509 1.01196 0.84599 1.22158 0.86166 0.95812 0.94082 0.88392 1.22367 0.93183 0.94074 0.97865 1.59745 1.15337 1.28374 1.29024 1.22414 0.95043 0.96602 0.94521 1.21518 0.88531 0.87519 0.98973 1.47255 1.26347 1.51146 1.12855 1.15556 0.82840 0.78651 0.82301 1.91005 1.41036 1.63632 1.47086 0.92523 0.98200 0.98920 0.94554 0.93467 0.89635 0.89249 0.90129 0.90710 0.89509 0.94323 0.83509 0.89383 0.94746 0.90647 0.88862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -29.13 13.96 55.43 0.77 -28.35 16 2 C 0.07 2.19 5.47 -17.82 -0.10 2.09 16 3 Si 0.88 22.37 27.47 -169.99 -4.67 17.70 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.27 -6.52 6.54 56.52 0.37 -6.16 16 7 C -0.51 -16.39 9.99 -34.44 -0.34 -16.73 16 8 H 0.08 3.01 8.06 -52.48 -0.42 2.59 16 9 C 0.17 4.62 4.76 36.00 0.17 4.80 16 10 O -0.36 -9.23 9.74 -35.23 -0.34 -9.57 16 11 C 0.04 0.66 6.28 37.16 0.23 0.89 16 12 C 0.16 2.36 6.39 -4.04 -0.03 2.34 16 13 N -0.63 -9.96 2.93 -179.09 -0.52 -10.48 16 14 C 0.10 1.06 7.31 -3.30 -0.02 1.04 16 15 C 0.12 1.38 4.11 -66.72 -0.27 1.11 16 16 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 17 C 0.06 0.45 5.97 -3.63 -0.02 0.43 16 18 N -0.69 -5.72 6.72 -113.28 -0.76 -6.48 16 19 C 0.04 0.40 6.70 -3.56 -0.02 0.38 16 20 C 0.16 2.02 7.12 -3.39 -0.02 2.00 16 21 N -0.64 -9.70 3.03 -170.04 -0.51 -10.22 16 22 C 0.70 13.63 8.09 -88.81 -0.72 12.92 16 23 O -0.55 -13.74 16.93 5.29 0.09 -13.65 16 24 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 25 H 0.00 0.01 7.20 -51.93 -0.37 -0.36 16 26 H -0.01 -0.18 7.57 -51.93 -0.39 -0.57 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.09 1.49 7.96 -51.93 -0.41 1.07 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.58 7.65 -51.93 -0.40 0.19 16 33 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.04 0.33 7.98 -51.93 -0.41 -0.09 16 35 H 0.35 2.04 8.90 -39.29 -0.35 1.69 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.09 1.29 7.93 -51.93 -0.41 0.88 16 LS Contribution 318.53 15.07 4.80 4.80 Total: -1.00 -40.05 318.53 -8.45 -48.49 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: -6.15 Total: -3.48 kcal Atomic # 6 Polarization: 12.39 SS G_CDS: -1.15 Total: 11.25 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: -1.03 Total: -55.53 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.25 Total: -23.22 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.67 Total: 17.70 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -40.05 -8.45 -48.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385401558.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.456 kcal (2) G-P(sol) polarization free energy of solvation -40.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds