Wall clock time and date at job start Mon Mar 30 2020 05:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99920 * 2 1 4 4 H 1.48496 * 109.46987 * 270.00172 * 3 2 1 5 5 H 1.48500 * 109.47073 * 29.99935 * 3 2 1 6 6 H 1.48500 * 109.47242 * 149.99919 * 3 2 1 7 7 C 1.37873 * 120.00249 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99766 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00129 * 180.02562 * 7 2 1 10 10 O 1.42902 * 109.47205 * 180.02562 * 9 7 2 11 11 C 1.42898 * 114.00186 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47319 * 180.02562 * 11 10 9 13 13 N 1.46497 * 109.47195 * 64.99855 * 12 11 10 14 14 C 1.47244 * 125.40553 * 90.00114 * 13 12 11 15 15 C 1.53645 * 103.80608 * 182.75644 * 14 13 12 16 16 H 1.09003 * 111.49806 * 113.47371 * 15 14 13 17 17 C 1.53181 * 110.80067 * 238.19690 * 15 14 13 18 18 N 1.47084 * 108.61603 * 164.85724 * 17 15 14 19 19 C 1.46729 * 112.36058 * 295.19631 * 18 17 15 20 20 C 1.53682 * 109.82428 * 63.78061 * 19 18 17 21 21 N 1.47053 * 106.98028 * 309.43677 * 20 19 18 22 22 C 1.33186 * 128.68180 * 232.20228 * 21 20 19 23 23 O 1.21586 * 123.20467 * 347.83982 * 22 21 20 24 24 H 0.97001 * 119.99927 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47017 * 60.00460 * 9 7 2 26 26 H 1.08999 * 109.47472 * 300.00137 * 9 7 2 27 27 H 1.09002 * 109.47259 * 300.00293 * 11 10 9 28 28 H 1.09001 * 109.47074 * 60.00315 * 11 10 9 29 29 H 1.09001 * 109.47630 * 185.00204 * 12 11 10 30 30 H 1.09004 * 109.47346 * 305.00335 * 12 11 10 31 31 H 1.08997 * 110.55760 * 301.33585 * 14 13 12 32 32 H 1.09000 * 110.55647 * 64.17989 * 14 13 12 33 33 H 1.08993 * 109.61514 * 284.59814 * 17 15 14 34 34 H 1.09000 * 109.61218 * 45.12243 * 17 15 14 35 35 H 1.00899 * 111.00386 * 170.24141 * 18 17 15 36 36 H 1.09006 * 109.41194 * 183.88398 * 19 18 17 37 37 H 1.08996 * 109.41594 * 303.74180 * 19 18 17 38 38 H 1.08997 * 109.95323 * 68.80860 * 20 19 18 39 39 H 1.08999 * 109.95135 * 190.07571 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 8 3.9880 -2.5412 0.0010 11 6 5.4125 -2.6541 0.0009 12 6 5.8070 -4.1323 0.0002 13 7 5.3690 -4.7540 -1.2519 14 6 6.1648 -4.8353 -2.4881 15 6 5.2164 -5.5102 -3.4910 16 1 4.9372 -4.8307 -4.2962 17 6 5.8322 -6.8021 -4.0371 18 7 4.7737 -7.5873 -4.6902 19 6 3.7483 -8.0387 -3.7427 20 6 3.0225 -6.8243 -3.1425 21 7 4.0592 -5.9013 -2.6568 22 6 4.1806 -5.3450 -1.4528 23 8 3.2979 -5.3673 -0.6169 24 1 -0.4850 0.8401 0.0004 25 1 3.8745 -0.6800 0.8912 26 1 3.8753 -0.6803 -0.8888 27 1 5.8153 -2.1704 -0.8890 28 1 5.8153 -2.1706 0.8910 29 1 6.8899 -4.2195 0.0897 30 1 5.3312 -4.6358 0.8417 31 1 6.4397 -3.8384 -2.8326 32 1 7.0539 -5.4460 -2.3314 33 1 6.6082 -6.5593 -4.7629 34 1 6.2617 -7.3779 -3.2173 35 1 5.1632 -8.3662 -5.1996 36 1 3.0280 -8.6708 -4.2623 37 1 4.2201 -8.6092 -2.9428 38 1 2.4187 -6.3363 -3.9075 39 1 2.3894 -7.1416 -2.3139 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385401558.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:16 Heat of formation + Delta-G solvation = -68.061968 kcal Electronic energy + Delta-G solvation = -21433.281842 eV Core-core repulsion = 18182.774952 eV Total energy + Delta-G solvation = -3250.506890 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.24937 -38.91513 -38.32933 -36.94026 -35.04898 -34.48969 -32.92380 -30.84064 -29.36822 -28.78956 -25.87479 -24.16750 -23.87193 -23.50112 -21.86927 -20.47105 -19.10554 -18.03289 -17.94327 -17.43962 -16.86738 -16.63706 -16.45086 -16.27976 -15.99346 -15.22372 -15.17678 -14.99348 -14.82121 -14.56695 -14.14414 -13.78929 -13.73108 -13.17457 -13.03238 -12.77129 -12.65330 -12.43815 -12.35277 -12.22934 -12.15485 -11.84245 -11.37700 -11.13851 -10.95653 -10.34311 -10.13610 -9.55767 -9.20330 -8.40166 -6.49230 1.28094 1.34029 1.44976 1.45237 2.18882 2.26838 2.83991 2.91275 3.09310 3.15646 3.64607 3.71262 3.84146 4.07786 4.17668 4.19356 4.28214 4.30005 4.45252 4.45805 4.52616 4.60061 4.61569 4.71771 4.80356 4.83497 4.88258 4.97106 5.05998 5.22990 5.40520 5.82455 5.85054 5.92486 5.96247 6.48217 6.55745 6.67855 6.80111 7.15859 7.64300 8.78545 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.025913 B = 0.004768 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.277837 B = 5871.643336 C = 6320.763700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.008 3.992 3 Si 0.967 3.033 4 H -0.257 1.257 5 H -0.270 1.270 6 H -0.242 1.242 7 C -0.547 4.547 8 H 0.011 0.989 9 C 0.183 3.817 10 O -0.401 6.401 11 C 0.023 3.977 12 C 0.159 3.841 13 N -0.634 5.634 14 C 0.099 3.901 15 C 0.114 3.886 16 H 0.095 0.905 17 C 0.064 3.936 18 N -0.698 5.698 19 C 0.060 3.940 20 C 0.145 3.855 21 N -0.641 5.641 22 C 0.685 3.315 23 O -0.631 6.631 24 H 0.274 0.726 25 H 0.014 0.986 26 H 0.008 0.992 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.149 0.851 30 H 0.060 0.940 31 H 0.097 0.903 32 H 0.117 0.883 33 H 0.122 0.878 34 H 0.041 0.959 35 H 0.365 0.635 36 H 0.111 0.889 37 H 0.032 0.968 38 H 0.070 0.930 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.605 -13.844 -11.218 28.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.189 4.189 3 Si 0.787 3.213 4 H -0.181 1.181 5 H -0.195 1.195 6 H -0.165 1.165 7 C -0.585 4.585 8 H 0.029 0.971 9 C 0.107 3.893 10 O -0.321 6.321 11 C -0.055 4.055 12 C 0.037 3.963 13 N -0.372 5.372 14 C -0.024 4.024 15 C 0.010 3.990 16 H 0.113 0.887 17 C -0.066 4.066 18 N -0.332 5.332 19 C -0.070 4.070 20 C 0.023 3.977 21 N -0.379 5.379 22 C 0.387 3.613 23 O -0.511 6.511 24 H 0.083 0.917 25 H 0.031 0.969 26 H 0.025 0.975 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.167 0.833 30 H 0.079 0.921 31 H 0.115 0.885 32 H 0.135 0.865 33 H 0.140 0.860 34 H 0.059 0.941 35 H 0.186 0.814 36 H 0.129 0.871 37 H 0.050 0.950 38 H 0.088 0.912 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 20.434 -13.394 -10.879 26.745 hybrid contribution -0.259 0.213 0.706 0.782 sum 20.175 -13.181 -10.173 26.159 Atomic orbital electron populations 1.70077 1.08563 1.28878 1.51097 1.26011 0.95926 1.03803 0.93176 0.85452 0.79357 0.76538 0.79927 1.18118 1.19461 1.16548 1.21170 0.91454 0.93304 1.52586 0.97052 1.20248 0.92954 0.81352 0.94733 1.88102 1.21267 1.27561 1.95156 1.23287 0.82430 0.98579 1.01154 1.21430 1.01477 0.89740 0.83645 1.47315 1.15290 1.60385 1.14228 1.22621 0.94824 1.03001 0.81937 1.22522 0.84916 0.97771 0.93745 0.88681 1.22366 0.93339 0.92134 0.98764 1.59682 1.15471 1.29303 1.28700 1.22230 0.95630 0.94413 0.94775 1.21678 0.88912 0.89049 0.98060 1.47458 1.27716 1.50470 1.12280 1.16132 0.83308 0.79055 0.82801 1.90936 1.43849 1.66591 1.49768 0.91733 0.96850 0.97454 0.92577 0.91191 0.83305 0.92108 0.88465 0.86489 0.85997 0.94069 0.81374 0.87133 0.94999 0.91175 0.91365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -63.81 13.96 21.45 0.30 -63.51 16 2 C 0.01 0.51 5.47 84.65 0.46 0.97 16 3 Si 0.97 45.74 27.47 68.60 1.88 47.63 16 4 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 5 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.24 -10.43 6.54 99.48 0.65 -9.78 16 7 C -0.55 -36.99 9.99 25.60 0.26 -36.74 16 8 H 0.01 0.88 8.06 -2.91 -0.02 0.86 16 9 C 0.18 10.07 4.76 71.24 0.34 10.40 16 10 O -0.40 -21.14 9.74 -148.98 -1.45 -22.59 16 11 C 0.02 0.81 6.28 71.98 0.45 1.26 16 12 C 0.16 4.51 6.39 86.38 0.55 5.06 16 13 N -0.63 -19.43 2.93 -839.08 -2.46 -21.89 16 14 C 0.10 1.78 7.31 86.45 0.63 2.42 16 15 C 0.11 2.34 4.11 45.00 0.19 2.53 16 16 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 17 C 0.06 0.80 5.97 86.33 0.52 1.32 16 18 N -0.70 -9.61 6.72 -512.29 -3.44 -13.05 16 19 C 0.06 1.03 6.70 86.57 0.58 1.61 16 20 C 0.15 3.99 7.12 86.50 0.62 4.60 16 21 N -0.64 -20.11 3.03 -811.03 -2.45 -22.56 16 22 C 0.69 27.85 8.09 179.72 1.45 29.31 16 23 O -0.63 -34.33 16.93 -3.99 -0.07 -34.40 16 24 H 0.27 16.73 8.31 -92.71 -0.77 15.96 16 25 H 0.01 0.71 7.20 -2.39 -0.02 0.69 16 26 H 0.01 0.40 7.57 -2.39 -0.02 0.38 16 27 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.15 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.06 2.08 7.96 -2.39 -0.02 2.06 16 31 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.12 1.19 7.65 -2.39 -0.02 1.17 16 33 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.04 0.53 7.98 -2.39 -0.02 0.51 16 35 H 0.37 2.99 8.90 -89.69 -0.80 2.19 16 36 H 0.11 1.41 8.14 -2.38 -0.02 1.39 16 37 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.07 2.16 7.93 -2.39 -0.02 2.14 16 Total: -1.00 -97.96 318.53 -1.46 -99.42 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: 0.19 Total: 8.20 kcal Atomic # 6 Polarization: 16.70 SS G_CDS: 6.04 Total: 22.74 kcal Atomic # 7 Polarization: -112.95 SS G_CDS: -8.05 Total: -121.01 kcal Atomic # 8 Polarization: -55.47 SS G_CDS: -1.52 Total: -56.99 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 1.88 Total: 47.63 kcal Total: -97.96 -1.46 -99.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385401558.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.361 kcal (2) G-P(sol) polarization free energy of solvation -97.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds