Wall clock time and date at job start Mon Mar 30 2020 05:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47076 * 2 1 4 4 N 1.46897 * 109.47212 * 120.00009 * 2 1 3 5 5 C 1.47902 * 110.99818 * 176.14225 * 4 2 1 6 6 C 1.54003 * 107.22520 * 214.25610 * 5 4 2 7 7 C 1.54600 * 105.13693 * 1.12504 * 6 5 4 8 8 H 1.08997 * 110.72456 * 263.42269 * 7 6 5 9 9 N 1.46499 * 110.72007 * 140.31493 * 7 6 5 10 10 C 1.34786 * 119.99959 * 86.45441 * 9 7 6 11 11 O 1.21441 * 119.99403 * 0.02562 * 10 9 7 12 12 C 1.48828 * 119.99995 * 180.02562 * 10 9 7 13 13 O 1.21496 * 120.00076 * 359.97438 * 12 10 9 14 14 N 1.34778 * 119.99858 * 180.02562 * 12 10 9 15 15 C 1.36118 * 119.99979 * 179.97438 * 14 12 10 16 16 H 1.07996 * 120.00041 * 0.02562 * 15 14 12 17 17 C 1.39588 * 119.99755 * 179.97438 * 15 14 12 18 18 N 1.31016 * 120.00226 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99722 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47023 * 60.00901 * 19 17 15 21 21 H 1.48500 * 109.46875 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47377 * 300.00496 * 19 17 15 23 23 C 1.48815 * 111.18493 * 58.80628 * 4 2 1 24 24 H 1.08996 * 109.46825 * 294.25131 * 1 2 3 25 25 H 1.08998 * 109.47092 * 54.25179 * 1 2 3 26 26 H 1.08998 * 109.47132 * 174.25073 * 1 2 3 27 27 H 1.09004 * 109.47079 * 240.00277 * 2 1 3 28 28 H 1.09004 * 109.47204 * 299.99935 * 3 2 1 29 29 H 1.08997 * 109.47349 * 60.00129 * 3 2 1 30 30 H 1.09004 * 109.46984 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.91903 * 94.81027 * 5 4 2 32 32 H 1.08998 * 109.92239 * 333.70544 * 5 4 2 33 33 H 1.08992 * 110.30814 * 120.04478 * 6 5 4 34 34 H 1.09003 * 110.30750 * 242.21476 * 6 5 4 35 35 H 0.96998 * 120.00793 * 266.45510 * 9 7 6 36 36 H 0.97003 * 120.00160 * 359.97438 * 14 12 10 37 37 H 0.97001 * 119.99784 * 179.97438 * 18 17 15 38 38 H 1.09003 * 110.52015 * 41.07554 * 23 4 2 39 39 H 1.08991 * 110.84195 * 278.09270 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4953 -0.7931 1.1880 6 6 3.8663 -2.1310 1.8544 7 6 2.5154 -2.7906 2.2152 8 1 2.2542 -2.5911 3.2544 9 7 2.5584 -4.2327 1.9611 10 6 3.0249 -5.0704 2.9085 11 8 3.4090 -4.6295 3.9728 12 6 3.0691 -6.5354 2.6501 13 8 2.6844 -6.9764 1.5853 14 7 3.5351 -7.3730 3.5976 15 6 3.5751 -8.7129 3.3615 16 1 3.2339 -9.1049 2.4148 17 6 4.0582 -9.5803 4.3427 18 7 4.4726 -9.1048 5.4910 19 14 4.1137 -11.4191 4.0184 20 1 4.9807 -11.6885 2.8432 21 1 4.6633 -12.1154 5.2094 22 1 2.7410 -11.9154 3.7451 23 6 1.5214 -2.0937 1.2525 24 1 -0.3633 0.4221 0.9370 25 1 -0.3633 0.6004 -0.8340 26 1 -0.3633 -1.0225 -0.1029 27 1 1.8934 -0.5138 -0.8900 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1301 1.4425 -0.0005 31 1 3.9283 0.0343 1.7501 32 1 3.8608 -0.7759 0.1612 33 1 4.4202 -2.7599 1.1575 34 1 4.4538 -1.9548 2.7554 35 1 2.2513 -4.5849 1.1111 36 1 3.8419 -7.0210 4.4478 37 1 4.8079 -9.7077 6.1730 38 1 1.5594 -2.5505 0.2635 39 1 0.5084 -2.1301 1.6529 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389869552.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:31 Heat of formation + Delta-G solvation = -95.987382 kcal Electronic energy + Delta-G solvation = -20535.421879 eV Core-core repulsion = 17283.704052 eV Total energy + Delta-G solvation = -3251.717827 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.48868 -40.24628 -38.98563 -36.64155 -36.04505 -33.99320 -33.39643 -30.30742 -29.67248 -27.95492 -27.46436 -24.85053 -23.23407 -21.78520 -21.47883 -20.69746 -20.36060 -18.80434 -17.84144 -17.39412 -17.09671 -16.50336 -16.33779 -15.76782 -15.38397 -15.32649 -15.04136 -14.63519 -14.55191 -14.24751 -13.67311 -13.55062 -13.23218 -13.00628 -12.93891 -12.90895 -12.62541 -12.57614 -12.28677 -12.23875 -12.12305 -11.90031 -11.74994 -11.66266 -11.63873 -10.29734 -10.27379 -10.22336 -9.44430 -8.66713 -6.11818 0.58390 1.40528 1.48883 1.53328 1.74596 2.27693 2.35819 2.92023 3.14397 3.29793 3.48052 3.66223 3.97371 4.01095 4.12098 4.14109 4.22042 4.29471 4.44204 4.58787 4.76691 4.84354 4.86636 4.95191 4.96475 5.00495 5.02677 5.09034 5.24157 5.27308 5.37385 5.41397 5.66739 5.83269 6.07288 6.16047 6.37276 6.80001 7.00257 7.26806 7.78673 8.48872 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.052225 B = 0.003287 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.017753 B = 8517.314673 C = 8775.849983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.064 3.936 3 C -0.140 4.140 4 N -0.516 5.516 5 C 0.047 3.953 6 C -0.143 4.143 7 C 0.137 3.863 8 H 0.087 0.913 9 N -0.687 5.687 10 C 0.522 3.478 11 O -0.563 6.563 12 C 0.389 3.611 13 O -0.617 6.617 14 N -0.510 5.510 15 C -0.346 4.346 16 H 0.100 0.900 17 C -0.005 4.005 18 N -0.896 5.896 19 Si 1.010 2.990 20 H -0.264 1.264 21 H -0.267 1.267 22 H -0.263 1.263 23 C 0.041 3.959 24 H 0.060 0.940 25 H 0.074 0.926 26 H 0.052 0.948 27 H 0.043 0.957 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.089 0.911 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.416 0.584 36 H 0.401 0.599 37 H 0.289 0.711 38 H 0.061 0.939 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.373 16.966 -9.520 19.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.044 4.044 3 C -0.198 4.198 4 N -0.242 5.242 5 C -0.081 4.081 6 C -0.182 4.182 7 C 0.033 3.967 8 H 0.105 0.895 9 N -0.340 5.340 10 C 0.305 3.695 11 O -0.442 6.442 12 C 0.174 3.826 13 O -0.507 6.507 14 N -0.144 5.144 15 C -0.476 4.476 16 H 0.117 0.883 17 C -0.209 4.209 18 N -0.533 5.533 19 Si 0.831 3.169 20 H -0.188 1.188 21 H -0.191 1.191 22 H -0.188 1.188 23 C -0.087 4.087 24 H 0.079 0.921 25 H 0.093 0.907 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.107 0.893 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.253 0.747 36 H 0.235 0.765 37 H 0.099 0.901 38 H 0.079 0.921 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.458 17.276 -8.828 19.907 hybrid contribution 0.514 -1.307 -0.430 1.469 sum -3.944 15.969 -9.258 18.875 Atomic orbital electron populations 1.21860 0.93448 1.02140 1.02779 1.21942 0.96568 0.95881 0.90007 1.21808 1.01055 0.94243 1.02660 1.64907 1.06815 1.13413 1.39047 1.22789 0.88482 0.96726 1.00097 1.22827 0.97145 0.96827 1.01397 1.21972 0.96301 0.77653 1.00823 0.89518 1.45575 1.63494 1.06536 1.18354 1.20068 0.77733 0.87654 0.84020 1.90685 1.48608 1.78851 1.26037 1.19588 0.89161 0.87357 0.86496 1.90542 1.55700 1.78143 1.26288 1.41657 1.50243 1.06953 1.15510 1.19955 1.42631 0.81779 1.03242 0.88260 1.26555 0.94203 1.06277 0.93859 1.69547 1.38285 1.39474 1.06010 0.84753 0.79442 0.74267 0.78465 1.18813 1.19105 1.18805 1.23363 0.98749 0.88556 0.98019 0.92112 0.90731 0.92874 0.93854 0.90835 0.92150 0.92643 0.89261 0.92460 0.91323 0.91136 0.74718 0.76474 0.90053 0.92062 0.88521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 8.88 71.98 0.64 -1.34 16 2 C 0.06 0.98 2.37 44.92 0.11 1.09 16 3 C -0.14 -1.79 9.16 71.98 0.66 -1.13 16 4 N -0.52 -9.93 5.11 -857.07 -4.38 -14.31 16 5 C 0.05 0.90 5.50 86.45 0.48 1.37 16 6 C -0.14 -3.54 6.67 31.48 0.21 -3.33 16 7 C 0.14 3.78 3.35 46.20 0.15 3.93 16 8 H 0.09 2.71 7.69 -2.39 -0.02 2.69 16 9 N -0.69 -23.00 5.14 -438.74 -2.25 -25.26 16 10 C 0.52 22.80 7.86 87.08 0.68 23.49 16 11 O -0.56 -26.66 16.19 -3.53 -0.06 -26.72 16 12 C 0.39 19.97 7.82 87.08 0.68 20.65 16 13 O -0.62 -33.39 16.03 -3.70 -0.06 -33.45 16 14 N -0.51 -28.09 5.25 -308.88 -1.62 -29.71 16 15 C -0.35 -19.50 9.67 84.35 0.82 -18.69 16 16 H 0.10 5.71 7.15 -2.91 -0.02 5.69 16 17 C 0.00 -0.24 5.51 85.14 0.47 0.23 16 18 N -0.90 -48.25 13.03 21.77 0.28 -47.97 16 19 Si 1.01 40.67 29.56 68.60 2.03 42.69 16 20 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 21 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 22 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 23 C 0.04 0.87 5.01 86.59 0.43 1.30 16 24 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.05 0.75 7.24 -2.39 -0.02 0.74 16 27 H 0.04 0.67 7.98 -2.39 -0.02 0.65 16 28 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 29 H 0.06 0.83 8.14 -2.39 -0.02 0.82 16 30 H 0.05 0.70 7.29 -2.38 -0.02 0.69 16 31 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.06 0.98 7.63 -2.39 -0.02 0.96 16 33 H 0.07 1.77 8.05 -2.39 -0.02 1.75 16 34 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.42 12.95 7.98 -92.71 -0.74 12.21 16 36 H 0.40 22.35 7.35 -92.71 -0.68 21.66 16 37 H 0.29 14.28 8.30 -92.71 -0.77 13.52 16 38 H 0.06 1.19 7.89 -2.39 -0.02 1.17 16 39 H 0.10 1.93 7.81 -2.39 -0.02 1.91 16 Total: -1.00 -64.45 324.65 -1.09 -65.54 By element: Atomic # 1 Polarization: 41.96 SS G_CDS: -0.35 Total: 41.61 kcal Atomic # 6 Polarization: 22.25 SS G_CDS: 5.33 Total: 27.58 kcal Atomic # 7 Polarization: -109.27 SS G_CDS: -7.97 Total: -117.25 kcal Atomic # 8 Polarization: -60.05 SS G_CDS: -0.12 Total: -60.17 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.69 kcal Total: -64.45 -1.09 -65.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389869552.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.447 kcal (2) G-P(sol) polarization free energy of solvation -64.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds