Wall clock time and date at job start Mon Mar 30 2020 04:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.46513 * 2 1 4 4 C 1.31028 * 119.99832 * 120.00173 * 3 2 1 5 5 N 1.35685 * 125.59914 * 179.97438 * 4 3 2 6 6 H 0.97005 * 122.73313 * 0.03168 * 5 4 3 7 7 C 1.36590 * 114.53209 * 180.02562 * 5 4 3 8 8 C 1.50697 * 122.00958 * 180.02562 * 7 5 4 9 9 N 1.46897 * 109.47561 * 84.99609 * 8 7 5 10 10 C 1.46903 * 111.00038 * 293.95654 * 9 8 7 11 11 C 1.46894 * 111.00175 * 169.99583 * 9 8 7 12 12 H 1.08998 * 109.46828 * 60.00939 * 11 9 8 13 13 C 1.52997 * 109.47515 * 300.00375 * 11 9 8 14 14 C 1.50706 * 109.47162 * 179.97438 * 11 9 8 15 15 H 1.07998 * 119.99629 * 0.02562 * 14 11 9 16 16 C 1.37875 * 119.99955 * 179.97438 * 14 11 9 17 17 N 1.31510 * 120.00308 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 119.99908 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47233 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46997 * 120.00173 * 18 16 14 21 21 H 1.48501 * 109.47364 * 240.00497 * 18 16 14 22 22 C 1.31045 * 115.97869 * 0.26689 * 7 5 4 23 23 S 1.75912 * 109.97056 * 359.60588 * 22 7 5 24 24 H 1.09010 * 109.46698 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47296 * 299.99237 * 1 2 3 26 26 H 1.09000 * 109.47262 * 60.00226 * 1 2 3 27 27 H 1.09003 * 109.47508 * 240.00620 * 2 1 3 28 28 H 1.09000 * 109.47262 * 119.99774 * 2 1 3 29 29 H 1.09004 * 109.47214 * 324.99393 * 8 7 5 30 30 H 1.08999 * 109.47026 * 204.99875 * 8 7 5 31 31 H 1.08995 * 109.46799 * 296.04180 * 10 9 8 32 32 H 1.08994 * 109.47282 * 56.04232 * 10 9 8 33 33 H 1.08999 * 109.46910 * 176.04341 * 10 9 8 34 34 H 1.09002 * 109.47153 * 59.99762 * 13 11 9 35 35 H 1.09001 * 109.46832 * 299.99953 * 13 11 9 36 36 H 1.09004 * 109.47261 * 179.97438 * 13 11 9 37 37 H 0.96998 * 120.00365 * 179.97438 * 17 16 14 38 38 H 1.08005 * 125.01435 * 179.69284 * 22 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.7715 1.8099 0.9827 5 7 3.2843 3.0609 1.0971 6 1 3.1260 3.7550 0.4382 7 6 4.0414 3.2633 2.2158 8 6 4.6914 4.5905 2.5111 9 7 3.7299 5.4651 3.1955 10 6 2.6113 5.8133 2.3092 11 6 4.3899 6.6726 3.7095 12 1 4.8354 7.2236 2.8813 13 6 5.4828 6.2729 4.7028 14 6 3.3742 7.5437 4.4030 15 1 2.3418 7.2313 4.4568 16 6 3.7633 8.7389 4.9696 17 7 5.0205 9.1191 4.9045 18 14 2.5045 9.8183 5.8297 19 1 1.1702 9.1696 5.7661 20 1 2.8979 10.0019 7.2499 21 1 2.4448 11.1411 5.1576 22 6 4.1727 2.2326 3.0143 23 16 3.2849 0.8571 2.3708 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8934 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 5.0060 5.0567 1.5774 30 1 5.5603 4.4352 3.1505 31 1 2.9837 6.3941 1.4653 32 1 2.1405 4.9011 1.9428 33 1 1.8799 6.4031 2.8617 34 1 6.2173 5.6431 4.2008 35 1 5.0372 5.7219 5.5310 36 1 5.9728 7.1689 5.0839 37 1 5.2942 9.9602 5.3028 38 1 4.7409 2.2286 3.9328 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390611827.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:01 Heat of formation + Delta-G solvation = 54.412510 kcal Electronic energy + Delta-G solvation = -18444.536655 eV Core-core repulsion = 15642.093528 eV Total energy + Delta-G solvation = -2802.443127 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.126 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.97611 -37.02843 -35.66509 -32.94338 -31.53799 -29.48516 -29.31311 -27.41052 -25.00194 -24.27319 -23.07177 -21.48162 -20.40919 -19.52759 -17.65393 -17.02918 -16.30316 -15.48464 -15.21582 -14.80973 -14.48357 -14.11615 -13.81813 -13.63902 -13.40232 -12.72199 -12.60525 -12.41332 -12.12058 -12.04717 -11.47926 -11.31758 -11.10186 -11.03327 -10.77325 -10.74944 -10.32737 -10.20482 -10.10279 -9.93296 -9.51323 -9.22147 -8.98141 -8.51032 -7.40082 -7.16512 -6.09600 -4.14461 1.36248 1.68907 1.99398 2.41417 2.89116 3.25275 3.33729 3.38005 4.34788 4.67785 4.90035 5.04376 5.12003 5.23600 5.26052 5.38095 5.44095 5.67857 5.75486 5.86181 5.89119 5.99208 6.01233 6.09560 6.20824 6.62636 6.69290 6.80322 6.92642 7.00121 7.13341 7.36386 7.55006 7.73849 7.77919 8.03141 8.18767 8.43410 8.91444 9.51195 10.97189 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.031961 B = 0.004116 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.843787 B = 6801.512194 C = 7244.332543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.067 3.933 3 N -0.583 5.583 4 C 0.369 3.631 5 N -0.616 5.616 6 H 0.422 0.578 7 C 0.145 3.855 8 C 0.101 3.899 9 N -0.529 5.529 10 C 0.031 3.969 11 C 0.212 3.788 12 H 0.001 0.999 13 C -0.136 4.136 14 C -0.505 4.505 15 H 0.065 0.935 16 C 0.060 3.940 17 N -0.893 5.893 18 Si 0.897 3.103 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.285 1.285 22 C -0.249 4.249 23 S -0.026 6.026 24 H 0.060 0.940 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.077 0.923 28 H 0.043 0.957 29 H 0.039 0.961 30 H 0.106 0.894 31 H 0.014 0.986 32 H 0.043 0.957 33 H 0.081 0.919 34 H 0.009 0.991 35 H 0.037 0.963 36 H 0.087 0.913 37 H 0.261 0.739 38 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.047 -14.259 -6.587 15.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.064 4.064 3 N -0.319 5.319 4 C -0.016 4.016 5 N -0.240 5.240 6 H 0.262 0.738 7 C 0.033 3.967 8 C -0.030 4.030 9 N -0.254 5.254 10 C -0.118 4.118 11 C 0.107 3.893 12 H 0.019 0.981 13 C -0.194 4.194 14 C -0.544 4.544 15 H 0.083 0.917 16 C -0.141 4.141 17 N -0.532 5.532 18 Si 0.725 3.275 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.211 1.211 22 C -0.390 4.390 23 S 0.213 5.787 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.096 0.904 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.124 0.876 31 H 0.033 0.967 32 H 0.061 0.939 33 H 0.099 0.901 34 H 0.028 0.972 35 H 0.056 0.944 36 H 0.106 0.894 37 H 0.071 0.929 38 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -2.735 -15.455 -6.486 16.983 hybrid contribution 0.065 2.234 -0.212 2.245 sum -2.670 -13.221 -6.699 15.060 Atomic orbital electron populations 1.21755 0.94415 1.01435 1.02593 1.21888 0.96103 0.87645 1.00797 1.71869 1.20800 1.16911 1.22329 1.24433 0.94529 0.88831 0.93843 1.41706 1.48022 1.10754 1.23554 0.73765 1.19312 0.93605 0.97710 0.86098 1.21063 0.95857 0.87579 0.98515 1.62230 1.09109 1.19959 1.34056 1.22336 0.95513 0.98738 0.95203 1.19311 0.92717 0.84035 0.93221 0.98110 1.21891 0.97272 1.01044 0.99161 1.21154 0.94935 1.02865 1.35402 0.91726 1.24918 0.95382 0.97693 0.96144 1.69885 1.15391 1.22392 1.45492 0.86454 0.81568 0.80179 0.79307 1.19722 1.20951 1.21116 1.24023 1.13639 0.94257 1.07055 1.85184 1.56460 1.16502 1.20593 0.92076 0.92719 0.91956 0.90443 0.93846 0.94273 0.87553 0.96722 0.93856 0.90061 0.97202 0.94368 0.89422 0.92932 0.80564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 10.24 37.16 0.38 -1.11 16 2 C 0.07 0.79 7.07 -4.04 -0.03 0.76 16 3 N -0.58 -8.45 10.66 -61.38 -0.65 -9.11 16 4 C 0.37 5.33 8.36 -89.34 -0.75 4.58 16 5 N -0.62 -8.64 4.56 -10.12 -0.05 -8.69 16 6 H 0.42 5.52 8.43 -40.82 -0.34 5.17 16 7 C 0.14 2.11 5.57 -82.20 -0.46 1.65 16 8 C 0.10 1.62 5.19 -4.98 -0.03 1.60 16 9 N -0.53 -10.44 4.61 -237.74 -1.10 -11.54 16 10 C 0.03 0.57 8.96 60.07 0.54 1.11 16 11 C 0.21 5.00 2.06 -68.87 -0.14 4.86 16 12 H 0.00 0.03 8.14 -51.93 -0.42 -0.39 16 13 C -0.14 -3.06 8.76 37.16 0.33 -2.74 16 14 C -0.51 -13.20 7.93 -34.44 -0.27 -13.48 16 15 H 0.06 1.70 6.39 -52.49 -0.34 1.37 16 16 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 17 N -0.89 -24.48 11.32 55.43 0.63 -23.85 16 18 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 19 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 C -0.25 -3.47 10.79 29.00 0.31 -3.16 16 23 S -0.03 -0.34 21.44 -107.50 -2.30 -2.64 16 24 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.04 0.50 6.22 -51.93 -0.32 0.18 16 29 H 0.04 0.61 8.12 -51.93 -0.42 0.19 16 30 H 0.11 1.67 5.76 -51.93 -0.30 1.37 16 31 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.04 0.72 5.91 -51.93 -0.31 0.41 16 33 H 0.08 1.65 6.23 -51.93 -0.32 1.32 16 34 H 0.01 0.18 6.20 -51.93 -0.32 -0.14 16 35 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.09 2.21 6.07 -51.93 -0.32 1.89 16 37 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 38 H 0.18 2.22 8.06 -52.48 -0.42 1.80 16 LS Contribution 316.38 15.07 4.77 4.77 Total: -1.00 -27.65 316.38 -9.45 -37.10 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -5.51 Total: 2.67 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -0.21 Total: -4.43 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: -1.17 Total: -53.19 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: -0.34 SS G_CDS: -2.30 Total: -2.64 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -27.65 -9.45 -37.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390611827.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.508 kcal (2) G-P(sol) polarization free energy of solvation -27.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds