Wall clock time and date at job start Mon Mar 30 2020 04:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.46513 * 2 1 4 4 C 1.31028 * 119.99832 * 120.00173 * 3 2 1 5 5 N 1.35685 * 125.59914 * 179.97438 * 4 3 2 6 6 H 0.97005 * 122.73313 * 0.03168 * 5 4 3 7 7 C 1.36590 * 114.53209 * 180.02562 * 5 4 3 8 8 C 1.50697 * 122.00958 * 180.02562 * 7 5 4 9 9 N 1.46897 * 109.47561 * 84.99609 * 8 7 5 10 10 C 1.46903 * 111.00038 * 293.95654 * 9 8 7 11 11 C 1.46894 * 111.00175 * 169.99583 * 9 8 7 12 12 H 1.08998 * 109.46828 * 60.00939 * 11 9 8 13 13 C 1.52997 * 109.47515 * 300.00375 * 11 9 8 14 14 C 1.50706 * 109.47162 * 179.97438 * 11 9 8 15 15 H 1.07998 * 119.99629 * 0.02562 * 14 11 9 16 16 C 1.37875 * 119.99955 * 179.97438 * 14 11 9 17 17 N 1.31510 * 120.00308 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 119.99908 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47233 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46997 * 120.00173 * 18 16 14 21 21 H 1.48501 * 109.47364 * 240.00497 * 18 16 14 22 22 C 1.31045 * 115.97869 * 0.26689 * 7 5 4 23 23 S 1.75912 * 109.97056 * 359.60588 * 22 7 5 24 24 H 1.09010 * 109.46698 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47296 * 299.99237 * 1 2 3 26 26 H 1.09000 * 109.47262 * 60.00226 * 1 2 3 27 27 H 1.09003 * 109.47508 * 240.00620 * 2 1 3 28 28 H 1.09000 * 109.47262 * 119.99774 * 2 1 3 29 29 H 1.09004 * 109.47214 * 324.99393 * 8 7 5 30 30 H 1.08999 * 109.47026 * 204.99875 * 8 7 5 31 31 H 1.08995 * 109.46799 * 296.04180 * 10 9 8 32 32 H 1.08994 * 109.47282 * 56.04232 * 10 9 8 33 33 H 1.08999 * 109.46910 * 176.04341 * 10 9 8 34 34 H 1.09002 * 109.47153 * 59.99762 * 13 11 9 35 35 H 1.09001 * 109.46832 * 299.99953 * 13 11 9 36 36 H 1.09004 * 109.47261 * 179.97438 * 13 11 9 37 37 H 0.96998 * 120.00365 * 179.97438 * 17 16 14 38 38 H 1.08005 * 125.01435 * 179.69284 * 22 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.7715 1.8099 0.9827 5 7 3.2843 3.0609 1.0971 6 1 3.1260 3.7550 0.4382 7 6 4.0414 3.2633 2.2158 8 6 4.6914 4.5905 2.5111 9 7 3.7299 5.4651 3.1955 10 6 2.6113 5.8133 2.3092 11 6 4.3899 6.6726 3.7095 12 1 4.8354 7.2236 2.8813 13 6 5.4828 6.2729 4.7028 14 6 3.3742 7.5437 4.4030 15 1 2.3418 7.2313 4.4568 16 6 3.7633 8.7389 4.9696 17 7 5.0205 9.1191 4.9045 18 14 2.5045 9.8183 5.8297 19 1 1.1702 9.1696 5.7661 20 1 2.8979 10.0019 7.2499 21 1 2.4448 11.1411 5.1576 22 6 4.1727 2.2326 3.0143 23 16 3.2849 0.8571 2.3708 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8934 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 5.0060 5.0567 1.5774 30 1 5.5603 4.4352 3.1505 31 1 2.9837 6.3941 1.4653 32 1 2.1405 4.9011 1.9428 33 1 1.8799 6.4031 2.8617 34 1 6.2173 5.6431 4.2008 35 1 5.0372 5.7219 5.5310 36 1 5.9728 7.1689 5.0839 37 1 5.2942 9.9602 5.3028 38 1 4.7409 2.2286 3.9328 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390611827.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:00 Heat of formation + Delta-G solvation = 36.747604 kcal Electronic energy + Delta-G solvation = -18445.302663 eV Core-core repulsion = 15642.093528 eV Total energy + Delta-G solvation = -2803.209135 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.12251 -38.53869 -36.76819 -34.77687 -32.69511 -31.10508 -30.50310 -28.82430 -26.79505 -25.67872 -24.30186 -22.60275 -21.70691 -21.04571 -18.83934 -18.29932 -17.99182 -17.11713 -16.41440 -16.10434 -15.75421 -15.59240 -15.24830 -14.89483 -14.54210 -14.24831 -14.00172 -13.62384 -13.58873 -12.97709 -12.96796 -12.84578 -12.61291 -12.54845 -12.34997 -12.11297 -12.08723 -11.96672 -11.76227 -11.24508 -10.86042 -10.57952 -10.49748 -10.25640 -9.01204 -8.24653 -8.10063 -6.21720 0.29792 0.59137 0.90353 1.29357 1.41458 1.44911 1.55118 1.82413 2.43308 3.18070 3.41237 3.69286 3.90853 4.15380 4.16980 4.38199 4.44220 4.53078 4.60305 4.65765 4.72978 4.81368 4.89634 4.95276 5.03141 5.06794 5.08528 5.25376 5.26706 5.52208 5.68753 5.72739 5.80037 6.06775 6.27966 6.32192 6.65391 6.74417 6.91655 7.47413 8.94728 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.031961 B = 0.004116 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.843787 B = 6801.512194 C = 7244.332543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.060 3.940 3 N -0.600 5.600 4 C 0.355 3.645 5 N -0.616 5.616 6 H 0.425 0.575 7 C 0.137 3.863 8 C 0.106 3.894 9 N -0.535 5.535 10 C 0.037 3.963 11 C 0.217 3.783 12 H -0.028 1.028 13 C -0.125 4.125 14 C -0.518 4.518 15 H 0.057 0.943 16 C 0.015 3.985 17 N -0.917 5.917 18 Si 0.954 3.046 19 H -0.270 1.270 20 H -0.281 1.281 21 H -0.283 1.283 22 C -0.249 4.249 23 S -0.002 6.002 24 H 0.085 0.915 25 H 0.041 0.959 26 H 0.058 0.942 27 H 0.090 0.910 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.113 0.887 31 H 0.015 0.985 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.040 0.960 35 H 0.034 0.966 36 H 0.059 0.941 37 H 0.261 0.739 38 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.549 -15.666 -6.715 17.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.070 4.070 3 N -0.336 5.336 4 C -0.031 4.031 5 N -0.241 5.241 6 H 0.265 0.735 7 C 0.025 3.975 8 C -0.025 4.025 9 N -0.260 5.260 10 C -0.111 4.111 11 C 0.111 3.889 12 H -0.011 1.011 13 C -0.183 4.183 14 C -0.557 4.557 15 H 0.075 0.925 16 C -0.184 4.184 17 N -0.557 5.557 18 Si 0.781 3.219 19 H -0.195 1.195 20 H -0.207 1.207 21 H -0.209 1.209 22 C -0.389 4.389 23 S 0.236 5.764 24 H 0.104 0.896 25 H 0.061 0.939 26 H 0.077 0.923 27 H 0.108 0.892 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.130 0.870 31 H 0.034 0.966 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.059 0.941 35 H 0.053 0.947 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -3.248 -16.885 -6.628 18.428 hybrid contribution 0.210 2.572 -0.234 2.591 sum -3.038 -14.313 -6.862 16.161 Atomic orbital electron populations 1.21733 0.93346 1.02833 1.01780 1.22066 0.96990 0.86526 1.01462 1.71858 1.20689 1.18419 1.22638 1.24569 0.94942 0.89092 0.94457 1.41670 1.48004 1.10925 1.23501 0.73496 1.19039 0.94557 0.97130 0.86792 1.21010 0.95289 0.87579 0.98603 1.62111 1.09869 1.18530 1.35483 1.22251 0.94813 0.99409 0.94645 1.19082 0.92444 0.85043 0.92334 1.01098 1.21705 0.97463 1.00197 0.98938 1.21442 0.95201 1.03594 1.35441 0.92474 1.25611 0.96932 0.98939 0.96900 1.69998 1.16724 1.22743 1.46270 0.85557 0.79556 0.78542 0.78268 1.19469 1.20664 1.20858 1.24304 1.13065 0.94406 1.07143 1.85096 1.55875 1.15652 1.19780 0.89616 0.93949 0.92274 0.89231 0.93606 0.93606 0.86953 0.96598 0.91798 0.92214 0.94143 0.94711 0.92182 0.92941 0.79266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 10.24 71.98 0.74 -1.88 16 2 C 0.06 1.31 7.07 86.38 0.61 1.92 16 3 N -0.60 -16.46 10.66 -348.11 -3.71 -20.17 16 4 C 0.35 9.65 8.36 179.90 1.50 11.16 16 5 N -0.62 -16.35 4.56 -185.92 -0.85 -17.20 16 6 H 0.42 10.57 8.43 -92.70 -0.78 9.78 16 7 C 0.14 3.75 5.57 41.73 0.23 3.98 16 8 C 0.11 3.25 5.19 85.56 0.44 3.69 16 9 N -0.54 -20.78 4.61 -906.07 -4.18 -24.96 16 10 C 0.04 1.37 8.96 127.69 1.14 2.51 16 11 C 0.22 10.27 2.06 44.17 0.09 10.36 16 12 H -0.03 -1.49 8.14 -2.39 -0.02 -1.51 16 13 C -0.12 -5.60 8.76 71.98 0.63 -4.96 16 14 C -0.52 -27.31 7.93 25.60 0.20 -27.11 16 15 H 0.06 3.04 6.39 -2.91 -0.02 3.02 16 16 C 0.02 0.81 5.30 84.65 0.45 1.25 16 17 N -0.92 -50.87 11.32 21.45 0.24 -50.63 16 18 Si 0.95 42.68 29.54 68.60 2.03 44.71 16 19 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 20 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 22 C -0.25 -6.38 10.79 67.74 0.73 -5.65 16 23 S 0.00 -0.06 21.44 -56.49 -1.21 -1.27 16 24 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 25 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.05 0.97 6.22 -2.39 -0.01 0.96 16 29 H 0.05 1.36 8.12 -2.38 -0.02 1.34 16 30 H 0.11 3.30 5.76 -2.39 -0.01 3.28 16 31 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.06 2.05 5.91 -2.39 -0.01 2.04 16 33 H 0.06 2.43 6.23 -2.39 -0.01 2.42 16 34 H 0.04 1.51 6.20 -2.39 -0.01 1.50 16 35 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.06 3.04 6.07 -2.38 -0.01 3.02 16 37 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 38 H 0.19 4.28 8.06 -2.91 -0.02 4.26 16 Total: -1.00 -58.10 316.38 -0.62 -58.72 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: 0.28 Total: 15.53 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: 6.78 Total: -4.73 kcal Atomic # 7 Polarization: -104.46 SS G_CDS: -8.50 Total: -112.96 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Atomic # 16 Polarization: -0.06 SS G_CDS: -1.21 Total: -1.27 kcal Total: -58.10 -0.62 -58.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390611827.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.471 kcal (2) G-P(sol) polarization free energy of solvation -58.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds