Wall clock time and date at job start Mon Mar 30 2020 04:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47398 * 2 1 4 4 C 1.31031 * 119.99507 * 120.00344 * 3 2 1 5 5 N 1.35699 * 125.59557 * 180.30691 * 4 3 2 6 6 H 0.96996 * 122.73662 * 359.97438 * 5 4 3 7 7 C 1.36587 * 114.52476 * 180.18511 * 5 4 3 8 8 C 1.50699 * 122.00464 * 179.81190 * 7 5 4 9 9 N 1.46902 * 109.47426 * 274.73660 * 8 7 5 10 10 C 1.46904 * 110.99737 * 66.04648 * 9 8 7 11 11 C 1.46894 * 110.99995 * 190.00400 * 9 8 7 12 12 H 1.09002 * 109.47104 * 299.99727 * 11 9 8 13 13 C 1.52997 * 109.47515 * 59.99995 * 11 9 8 14 14 C 1.50708 * 109.46991 * 180.02562 * 11 9 8 15 15 H 1.08000 * 119.99723 * 359.97438 * 14 11 9 16 16 C 1.37873 * 119.99930 * 179.97438 * 14 11 9 17 17 N 1.31509 * 120.00195 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 119.99968 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.46809 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46948 * 120.00245 * 18 16 14 21 21 H 1.48497 * 109.47378 * 240.00531 * 18 16 14 22 22 C 1.31048 * 115.98266 * 359.54169 * 7 5 4 23 23 S 1.75902 * 109.97261 * 0.24763 * 22 7 5 24 24 H 1.08998 * 109.47373 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.46683 * 299.99691 * 1 2 3 26 26 H 1.08999 * 109.47336 * 59.99133 * 1 2 3 27 27 H 1.09007 * 109.46683 * 240.00309 * 2 1 3 28 28 H 1.08999 * 109.47336 * 120.00866 * 2 1 3 29 29 H 1.08999 * 109.47031 * 154.73524 * 8 7 5 30 30 H 1.09007 * 109.47247 * 34.73952 * 8 7 5 31 31 H 1.09003 * 109.46649 * 183.95663 * 10 9 8 32 32 H 1.08997 * 109.47179 * 303.95694 * 10 9 8 33 33 H 1.09001 * 109.46814 * 63.95866 * 10 9 8 34 34 H 1.09002 * 109.47153 * 59.99762 * 13 11 9 35 35 H 1.09001 * 109.46832 * 299.99953 * 13 11 9 36 36 H 1.09004 * 109.47261 * 179.97438 * 13 11 9 37 37 H 0.97006 * 120.00358 * 179.97438 * 17 16 14 38 38 H 1.08006 * 125.01253 * 180.27144 * 22 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.7718 1.8096 0.9827 5 7 3.2796 3.0624 1.1004 6 1 3.1179 3.7578 0.4438 7 6 4.0408 3.2631 2.2166 8 6 4.6901 4.5905 2.5124 9 7 5.9813 4.6701 1.8165 10 6 5.7937 4.6898 0.3596 11 6 6.7496 5.8393 2.2643 12 1 6.1838 6.7473 2.0560 13 6 7.0088 5.7337 3.7685 14 6 8.0646 5.8877 1.5296 15 1 8.3056 5.1259 0.8031 16 6 8.9599 6.9046 1.7851 17 7 8.6666 7.8321 2.6702 18 14 10.5901 6.9643 0.8750 19 1 10.6774 5.8139 -0.0600 20 1 10.6829 8.2328 0.1084 21 1 11.7057 6.8940 1.8525 22 6 4.1681 2.2337 3.0174 23 16 3.2855 0.8565 2.3705 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5140 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5140 0.8899 29 1 4.8498 4.6855 3.5865 30 1 4.0419 5.3967 2.1689 31 1 6.7665 4.6781 -0.1321 32 1 5.2220 3.8133 0.0550 33 1 5.2536 5.5928 0.0751 34 1 7.5746 4.8256 3.9768 35 1 6.0575 5.6989 4.2995 36 1 7.5793 6.6011 4.1007 37 1 9.2967 8.5473 2.8502 38 1 4.7314 2.2314 3.9390 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390611828.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:03 Heat of formation + Delta-G solvation = 54.337829 kcal Electronic energy + Delta-G solvation = -18414.837061 eV Core-core repulsion = 15612.390696 eV Total energy + Delta-G solvation = -2802.446366 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.126 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.97478 -37.02906 -35.66980 -32.94427 -31.54342 -29.49049 -29.31505 -27.41204 -25.00324 -24.27692 -23.07586 -21.48486 -20.41077 -19.52357 -17.65720 -17.03037 -16.30466 -15.53932 -15.01445 -14.97986 -14.49680 -14.09409 -13.80946 -13.64540 -13.40386 -12.75688 -12.60749 -12.40772 -12.13962 -12.04863 -11.46304 -11.34064 -11.11683 -11.03318 -10.77303 -10.74997 -10.32215 -10.20395 -10.10378 -9.93767 -9.51288 -9.22280 -8.98201 -8.51087 -7.40103 -7.16557 -6.09632 -4.14496 1.36226 1.68775 1.99558 2.41544 2.88773 3.25247 3.33691 3.37986 4.34754 4.67307 4.90120 5.02771 5.11412 5.23255 5.24612 5.37589 5.44257 5.66144 5.74586 5.85797 5.88909 5.98920 6.01085 6.05883 6.20799 6.62596 6.69292 6.80295 6.92605 7.00114 7.13327 7.36292 7.54975 7.73818 7.77839 8.03131 8.18726 8.43375 8.91401 9.51157 10.97133 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.037755 B = 0.003942 C = 0.003783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.445591 B = 7101.744438 C = 7399.259808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.066 3.934 3 N -0.583 5.583 4 C 0.369 3.631 5 N -0.616 5.616 6 H 0.422 0.578 7 C 0.144 3.856 8 C 0.101 3.899 9 N -0.529 5.529 10 C 0.031 3.969 11 C 0.213 3.787 12 H 0.001 0.999 13 C -0.136 4.136 14 C -0.505 4.505 15 H 0.065 0.935 16 C 0.060 3.940 17 N -0.892 5.892 18 Si 0.897 3.103 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.283 1.283 22 C -0.249 4.249 23 S -0.025 6.025 24 H 0.060 0.940 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.078 0.922 28 H 0.044 0.956 29 H 0.106 0.894 30 H 0.039 0.961 31 H 0.081 0.919 32 H 0.043 0.957 33 H 0.014 0.986 34 H 0.037 0.963 35 H 0.009 0.991 36 H 0.087 0.913 37 H 0.261 0.739 38 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.091 -10.720 -0.432 16.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.065 4.065 3 N -0.319 5.319 4 C -0.016 4.016 5 N -0.240 5.240 6 H 0.262 0.738 7 C 0.033 3.967 8 C -0.030 4.030 9 N -0.254 5.254 10 C -0.118 4.118 11 C 0.107 3.893 12 H 0.019 0.981 13 C -0.194 4.194 14 C -0.544 4.544 15 H 0.083 0.917 16 C -0.141 4.141 17 N -0.532 5.532 18 Si 0.725 3.275 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.390 4.390 23 S 0.213 5.787 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.097 0.903 28 H 0.062 0.938 29 H 0.124 0.876 30 H 0.057 0.943 31 H 0.099 0.901 32 H 0.061 0.939 33 H 0.033 0.967 34 H 0.056 0.944 35 H 0.028 0.972 36 H 0.106 0.894 37 H 0.071 0.929 38 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -12.345 -12.068 -0.598 17.274 hybrid contribution 0.892 1.943 -0.720 2.256 sum -11.453 -10.125 -1.318 15.344 Atomic orbital electron populations 1.21751 0.94487 1.01426 1.02445 1.21892 0.95984 0.87689 1.00938 1.71867 1.21173 1.16954 1.21893 1.24439 0.94535 0.88763 0.93899 1.41705 1.47793 1.10691 1.23848 0.73769 1.19312 0.92886 0.98637 0.85899 1.21065 0.91390 0.88511 1.02049 1.62235 1.12904 1.45891 1.04335 1.22336 1.02210 0.97686 0.89549 1.19310 0.92349 0.84489 0.93126 0.98110 1.21891 0.98043 1.02732 0.96708 1.21156 1.00920 1.09867 1.22422 0.91723 1.24919 0.98464 0.95455 0.95309 1.69887 1.36210 1.13679 1.33376 0.86452 0.83537 0.77864 0.79650 1.19715 1.21125 1.20950 1.24022 1.13164 0.93864 1.07915 1.85181 1.56414 1.16830 1.20304 0.92069 0.92869 0.91967 0.90347 0.93826 0.87554 0.94272 0.90061 0.93865 0.96721 0.94370 0.97195 0.89422 0.92933 0.80561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 10.24 37.16 0.38 -1.04 16 2 C 0.07 0.78 7.06 -4.04 -0.03 0.76 16 3 N -0.58 -8.45 10.66 -61.38 -0.65 -9.10 16 4 C 0.37 5.33 8.36 -89.33 -0.75 4.58 16 5 N -0.62 -8.64 4.56 -10.11 -0.05 -8.69 16 6 H 0.42 5.51 8.46 -40.82 -0.35 5.17 16 7 C 0.14 2.11 5.56 -82.21 -0.46 1.65 16 8 C 0.10 1.62 5.19 -4.98 -0.03 1.60 16 9 N -0.53 -10.45 4.61 -237.72 -1.10 -11.55 16 10 C 0.03 0.57 8.96 60.07 0.54 1.11 16 11 C 0.21 5.01 2.06 -68.87 -0.14 4.86 16 12 H 0.00 0.03 8.14 -51.93 -0.42 -0.39 16 13 C -0.14 -3.06 8.77 37.16 0.33 -2.74 16 14 C -0.51 -13.21 7.93 -34.44 -0.27 -13.49 16 15 H 0.06 1.71 6.39 -52.49 -0.34 1.37 16 16 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 17 N -0.89 -24.48 11.32 55.43 0.63 -23.86 16 18 Si 0.90 20.76 29.54 -169.99 -5.02 15.73 16 19 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 20 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 C -0.25 -3.47 10.79 29.00 0.31 -3.16 16 23 S -0.03 -0.34 21.44 -107.50 -2.30 -2.64 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.55 8.14 -51.92 -0.42 0.13 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.08 0.87 8.14 -51.92 -0.42 0.44 16 28 H 0.04 0.51 6.22 -51.93 -0.32 0.18 16 29 H 0.11 1.67 5.76 -51.93 -0.30 1.37 16 30 H 0.04 0.61 8.12 -51.92 -0.42 0.19 16 31 H 0.08 1.65 6.23 -51.93 -0.32 1.33 16 32 H 0.04 0.72 5.93 -51.93 -0.31 0.41 16 33 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.01 0.18 6.20 -51.93 -0.32 -0.14 16 36 H 0.09 2.21 6.07 -51.93 -0.32 1.89 16 37 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 38 H 0.18 2.23 8.06 -52.48 -0.42 1.80 16 LS Contribution 316.43 15.07 4.77 4.77 Total: -1.00 -27.67 316.43 -9.45 -37.11 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -5.51 Total: 2.59 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -0.21 Total: -4.37 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: -1.17 Total: -53.19 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: -0.34 SS G_CDS: -2.30 Total: -2.64 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -27.67 -9.45 -37.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390611828.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.451 kcal (2) G-P(sol) polarization free energy of solvation -27.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds