Wall clock time and date at job start Mon Mar 30 2020 04:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47398 * 2 1 4 4 C 1.31031 * 119.99507 * 120.00344 * 3 2 1 5 5 N 1.35699 * 125.59557 * 180.30691 * 4 3 2 6 6 H 0.96996 * 122.73662 * 359.97438 * 5 4 3 7 7 C 1.36587 * 114.52476 * 180.18511 * 5 4 3 8 8 C 1.50699 * 122.00464 * 179.81190 * 7 5 4 9 9 N 1.46902 * 109.47426 * 274.73660 * 8 7 5 10 10 C 1.46904 * 110.99737 * 66.04648 * 9 8 7 11 11 C 1.46894 * 110.99995 * 190.00400 * 9 8 7 12 12 H 1.09002 * 109.47104 * 299.99727 * 11 9 8 13 13 C 1.52997 * 109.47515 * 59.99995 * 11 9 8 14 14 C 1.50708 * 109.46991 * 180.02562 * 11 9 8 15 15 H 1.08000 * 119.99723 * 359.97438 * 14 11 9 16 16 C 1.37873 * 119.99930 * 179.97438 * 14 11 9 17 17 N 1.31509 * 120.00195 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 119.99968 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.46809 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46948 * 120.00245 * 18 16 14 21 21 H 1.48497 * 109.47378 * 240.00531 * 18 16 14 22 22 C 1.31048 * 115.98266 * 359.54169 * 7 5 4 23 23 S 1.75902 * 109.97261 * 0.24763 * 22 7 5 24 24 H 1.08998 * 109.47373 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.46683 * 299.99691 * 1 2 3 26 26 H 1.08999 * 109.47336 * 59.99133 * 1 2 3 27 27 H 1.09007 * 109.46683 * 240.00309 * 2 1 3 28 28 H 1.08999 * 109.47336 * 120.00866 * 2 1 3 29 29 H 1.08999 * 109.47031 * 154.73524 * 8 7 5 30 30 H 1.09007 * 109.47247 * 34.73952 * 8 7 5 31 31 H 1.09003 * 109.46649 * 183.95663 * 10 9 8 32 32 H 1.08997 * 109.47179 * 303.95694 * 10 9 8 33 33 H 1.09001 * 109.46814 * 63.95866 * 10 9 8 34 34 H 1.09002 * 109.47153 * 59.99762 * 13 11 9 35 35 H 1.09001 * 109.46832 * 299.99953 * 13 11 9 36 36 H 1.09004 * 109.47261 * 179.97438 * 13 11 9 37 37 H 0.97006 * 120.00358 * 179.97438 * 17 16 14 38 38 H 1.08006 * 125.01253 * 180.27144 * 22 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.7718 1.8096 0.9827 5 7 3.2796 3.0624 1.1004 6 1 3.1179 3.7578 0.4438 7 6 4.0408 3.2631 2.2166 8 6 4.6901 4.5905 2.5124 9 7 5.9813 4.6701 1.8165 10 6 5.7937 4.6898 0.3596 11 6 6.7496 5.8393 2.2643 12 1 6.1838 6.7473 2.0560 13 6 7.0088 5.7337 3.7685 14 6 8.0646 5.8877 1.5296 15 1 8.3056 5.1259 0.8031 16 6 8.9599 6.9046 1.7851 17 7 8.6666 7.8321 2.6702 18 14 10.5901 6.9643 0.8750 19 1 10.6774 5.8139 -0.0600 20 1 10.6829 8.2328 0.1084 21 1 11.7057 6.8940 1.8525 22 6 4.1681 2.2337 3.0174 23 16 3.2855 0.8565 2.3705 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5140 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5140 0.8899 29 1 4.8498 4.6855 3.5865 30 1 4.0419 5.3967 2.1689 31 1 6.7665 4.6781 -0.1321 32 1 5.2220 3.8133 0.0550 33 1 5.2536 5.5928 0.0751 34 1 7.5746 4.8256 3.9768 35 1 6.0575 5.6989 4.2995 36 1 7.5793 6.6011 4.1007 37 1 9.2967 8.5473 2.8502 38 1 4.7314 2.2314 3.9390 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390611828.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:02 Heat of formation + Delta-G solvation = 36.656510 kcal Electronic energy + Delta-G solvation = -18415.603781 eV Core-core repulsion = 15612.390696 eV Total energy + Delta-G solvation = -2803.213085 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.126 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.12131 -38.53931 -36.76928 -34.77764 -32.69378 -31.10503 -30.50021 -28.82613 -26.79592 -25.67870 -24.29934 -22.60376 -21.70911 -21.04084 -18.84154 -18.29983 -17.99335 -17.13161 -16.33863 -16.15556 -15.75801 -15.66784 -15.07793 -15.01274 -14.50723 -14.25569 -14.01026 -13.67396 -13.55926 -12.97764 -12.92660 -12.86176 -12.61704 -12.52250 -12.37420 -12.13761 -12.07246 -11.96881 -11.75252 -11.24874 -10.86070 -10.57944 -10.49874 -10.25838 -9.01316 -8.24705 -8.10159 -6.21838 0.29772 0.58990 0.90536 1.29397 1.41346 1.44776 1.55023 1.82125 2.43183 3.17939 3.41181 3.69299 3.90819 4.15244 4.16845 4.38518 4.44194 4.53263 4.60170 4.65759 4.73136 4.81461 4.90022 4.95266 5.03178 5.07042 5.08453 5.25328 5.26781 5.52079 5.68702 5.72636 5.79988 6.06784 6.27915 6.32096 6.65285 6.74356 6.91545 7.47283 8.94585 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.037755 B = 0.003942 C = 0.003783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.445591 B = 7101.744438 C = 7399.259808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.059 3.941 3 N -0.600 5.600 4 C 0.354 3.646 5 N -0.616 5.616 6 H 0.425 0.575 7 C 0.137 3.863 8 C 0.106 3.894 9 N -0.535 5.535 10 C 0.037 3.963 11 C 0.218 3.782 12 H -0.029 1.029 13 C -0.125 4.125 14 C -0.519 4.519 15 H 0.057 0.943 16 C 0.015 3.985 17 N -0.917 5.917 18 Si 0.955 3.045 19 H -0.270 1.270 20 H -0.283 1.283 21 H -0.281 1.281 22 C -0.249 4.249 23 S -0.002 6.002 24 H 0.084 0.916 25 H 0.045 0.955 26 H 0.058 0.942 27 H 0.086 0.914 28 H 0.046 0.954 29 H 0.112 0.888 30 H 0.046 0.954 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.015 0.985 34 H 0.034 0.966 35 H 0.040 0.960 36 H 0.059 0.941 37 H 0.261 0.739 38 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.714 -12.077 -0.479 17.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.072 4.072 3 N -0.336 5.336 4 C -0.031 4.031 5 N -0.241 5.241 6 H 0.265 0.735 7 C 0.025 3.975 8 C -0.025 4.025 9 N -0.260 5.260 10 C -0.111 4.111 11 C 0.111 3.889 12 H -0.011 1.011 13 C -0.183 4.183 14 C -0.557 4.557 15 H 0.075 0.925 16 C -0.184 4.184 17 N -0.557 5.557 18 Si 0.781 3.219 19 H -0.195 1.195 20 H -0.209 1.209 21 H -0.207 1.207 22 C -0.389 4.389 23 S 0.236 5.764 24 H 0.103 0.897 25 H 0.064 0.936 26 H 0.077 0.923 27 H 0.104 0.896 28 H 0.064 0.936 29 H 0.130 0.870 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.034 0.966 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -12.987 -13.446 -0.654 18.705 hybrid contribution 1.001 2.292 -0.721 2.603 sum -11.986 -11.154 -1.375 16.431 Atomic orbital electron populations 1.21721 0.93036 1.02847 1.01897 1.22071 0.97200 0.86527 1.01370 1.71856 1.21061 1.18457 1.22207 1.24575 0.94950 0.89017 0.94526 1.41668 1.47777 1.10852 1.23800 0.73498 1.19038 0.93757 0.98090 0.86637 1.21012 0.89797 0.89770 1.01901 1.62116 1.15036 1.43768 1.05091 1.22252 1.01265 0.98694 0.88896 1.19081 0.91548 0.84712 0.93543 1.01104 1.21706 0.99149 1.01124 0.96336 1.21445 1.02202 1.09598 1.22453 0.92465 1.25614 1.01397 0.95313 0.96080 1.70000 1.37161 1.14141 1.34418 0.85555 0.80017 0.77771 0.78570 1.19454 1.20877 1.20664 1.24303 1.12524 0.93977 1.08112 1.85094 1.55872 1.15965 1.19454 0.89693 0.93571 0.92301 0.89596 0.93598 0.86958 0.93606 0.92213 0.91798 0.96599 0.94705 0.94136 0.92184 0.92941 0.79271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 10.24 71.98 0.74 -1.71 16 2 C 0.06 1.29 7.06 86.38 0.61 1.90 16 3 N -0.60 -16.47 10.66 -348.10 -3.71 -20.18 16 4 C 0.35 9.65 8.36 179.90 1.50 11.16 16 5 N -0.62 -16.35 4.56 -185.90 -0.85 -17.20 16 6 H 0.42 10.56 8.46 -92.71 -0.78 9.78 16 7 C 0.14 3.75 5.56 41.73 0.23 3.98 16 8 C 0.11 3.25 5.19 85.56 0.44 3.69 16 9 N -0.54 -20.80 4.61 -906.02 -4.18 -24.98 16 10 C 0.04 1.37 8.96 127.69 1.14 2.52 16 11 C 0.22 10.28 2.06 44.17 0.09 10.37 16 12 H -0.03 -1.50 8.14 -2.39 -0.02 -1.52 16 13 C -0.13 -5.60 8.77 71.98 0.63 -4.97 16 14 C -0.52 -27.34 7.93 25.60 0.20 -27.13 16 15 H 0.06 3.04 6.39 -2.91 -0.02 3.02 16 16 C 0.01 0.79 5.30 84.65 0.45 1.24 16 17 N -0.92 -50.88 11.32 21.44 0.24 -50.63 16 18 Si 0.95 42.70 29.54 68.60 2.03 44.73 16 19 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 20 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 21 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 22 C -0.25 -6.38 10.79 67.73 0.73 -5.65 16 23 S 0.00 -0.06 21.44 -56.49 -1.21 -1.27 16 24 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 26 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 28 H 0.05 0.97 6.22 -2.39 -0.01 0.96 16 29 H 0.11 3.30 5.76 -2.39 -0.01 3.28 16 30 H 0.05 1.36 8.12 -2.38 -0.02 1.34 16 31 H 0.06 2.43 6.23 -2.39 -0.01 2.42 16 32 H 0.06 2.05 5.93 -2.39 -0.01 2.04 16 33 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.03 1.53 8.14 -2.39 -0.02 1.52 16 35 H 0.04 1.52 6.20 -2.39 -0.01 1.50 16 36 H 0.06 3.04 6.07 -2.38 -0.01 3.02 16 37 H 0.26 13.82 8.31 -92.70 -0.77 13.05 16 38 H 0.19 4.29 8.06 -2.91 -0.02 4.27 16 Total: -1.00 -58.12 316.43 -0.62 -58.74 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: 0.28 Total: 15.39 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: 6.78 Total: -4.61 kcal Atomic # 7 Polarization: -104.49 SS G_CDS: -8.50 Total: -112.99 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Atomic # 16 Polarization: -0.06 SS G_CDS: -1.21 Total: -1.27 kcal Total: -58.12 -0.62 -58.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390611828.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.398 kcal (2) G-P(sol) polarization free energy of solvation -58.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds