Wall clock time and date at job start Mon Mar 30 2020 05:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.30158 * 2 1 4 4 N 1.45759 * 109.29983 * 119.37981 * 2 1 3 5 5 C 1.33350 * 124.10717 * 139.40825 * 4 2 1 6 6 O 1.21282 * 118.24784 * 177.73584 * 5 4 2 7 7 C 1.50172 * 123.50958 * 357.75472 * 5 4 2 8 8 C 1.53007 * 110.00408 * 17.47139 * 7 5 4 9 9 C 1.52918 * 109.30265 * 240.41251 * 2 1 3 10 10 H 1.08993 * 109.60404 * 308.85946 * 9 2 1 11 11 N 1.46901 * 109.59929 * 69.18246 * 9 2 1 12 12 C 1.46896 * 110.99831 * 204.67462 * 11 9 2 13 13 C 1.50709 * 109.47179 * 179.97438 * 12 11 9 14 14 O 1.21281 * 119.99753 * 0.02562 * 13 12 11 15 15 N 1.34778 * 120.00069 * 180.02562 * 13 12 11 16 16 C 1.46493 * 119.99700 * 180.02562 * 15 13 12 17 17 C 1.50706 * 109.47128 * 179.97438 * 16 15 13 18 18 H 1.08005 * 119.99758 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00102 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00217 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99766 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47057 * 179.97438 * 21 19 17 23 23 H 1.48500 * 109.47389 * 300.00068 * 21 19 17 24 24 H 1.48504 * 109.47102 * 60.00417 * 21 19 17 25 25 H 1.09000 * 109.47344 * 179.58403 * 1 2 3 26 26 H 1.09000 * 109.47009 * 299.58451 * 1 2 3 27 27 H 1.09001 * 109.46947 * 59.57962 * 1 2 3 28 28 H 0.96999 * 117.94850 * 319.38849 * 4 2 1 29 29 H 1.09001 * 109.40292 * 137.70782 * 7 5 4 30 30 H 1.09001 * 109.40564 * 257.53954 * 7 5 4 31 31 H 1.09008 * 109.80208 * 191.53323 * 8 7 5 32 32 H 1.09004 * 109.51481 * 71.02795 * 8 7 5 33 33 H 1.00899 * 111.00212 * 80.72157 * 11 9 2 34 34 H 1.09000 * 109.47274 * 60.00200 * 12 11 9 35 35 H 1.08997 * 109.47798 * 299.99999 * 12 11 9 36 36 H 0.96998 * 120.00160 * 359.97438 * 15 13 12 37 37 H 1.09001 * 109.47786 * 60.00101 * 16 15 13 38 38 H 1.09006 * 109.47401 * 299.99686 * 16 15 13 39 39 H 0.97001 * 119.99646 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8903 1.0287 0.0000 4 7 2.0117 -0.6749 1.1987 5 6 3.0502 -1.5112 1.2198 6 8 3.3862 -1.9824 2.2856 7 6 3.8261 -1.9005 -0.0056 8 6 3.5519 -0.9069 -1.1364 9 6 2.0355 -0.7126 -1.2550 10 1 1.5484 -1.6834 -1.3456 11 7 1.7342 0.1024 -2.4395 12 6 1.6494 -0.7325 -3.6452 13 6 1.3391 0.1362 -4.8370 14 8 1.2026 1.3330 -4.6958 15 7 1.2134 -0.4168 -6.0596 16 6 0.9124 0.4277 -7.2181 17 6 0.8253 -0.4287 -8.4551 18 1 0.9793 -1.4955 -8.3852 19 6 0.5491 0.1494 -9.6759 20 7 0.3621 1.4484 -9.7610 21 14 0.4419 -0.9121 -11.2091 22 1 0.1354 -0.0562 -12.3833 23 1 1.7386 -1.6030 -11.4246 24 1 -0.6343 -1.9211 -11.0384 25 1 -0.3634 -1.0276 -0.0075 26 1 -0.3633 0.5074 0.8937 27 1 -0.3633 0.5204 -0.8862 28 1 1.5481 -0.5049 2.0336 29 1 4.8913 -1.9019 0.2256 30 1 3.5235 -2.8980 -0.3241 31 1 3.9464 -1.2971 -2.0746 32 1 4.0272 0.0467 -0.9064 33 1 2.4157 0.8373 -2.5557 34 1 0.8590 -1.4725 -3.5199 35 1 2.6008 -1.2403 -3.8032 36 1 1.3230 -1.3740 -6.1726 37 1 1.7030 1.1675 -7.3438 38 1 -0.0389 0.9359 -7.0599 39 1 0.4181 1.9997 -8.9648 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000392924155.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:12 Heat of formation + Delta-G solvation = -89.259489 kcal Electronic energy + Delta-G solvation = -20343.422386 eV Core-core repulsion = 17091.996302 eV Total energy + Delta-G solvation = -3251.426084 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.75970 -39.09788 -37.69593 -35.02434 -34.40561 -32.99474 -32.48354 -30.80347 -28.16071 -26.55077 -24.83781 -23.44670 -22.56062 -22.16360 -20.14022 -19.52779 -17.56486 -17.41902 -16.57207 -16.28909 -15.85476 -15.62736 -15.09705 -14.85062 -14.44948 -14.20362 -13.99008 -13.77612 -13.25325 -12.97701 -12.83584 -12.69581 -12.34015 -12.31886 -12.11859 -11.74277 -11.70628 -11.39991 -11.31682 -11.07631 -10.81950 -10.19956 -10.06601 -9.41521 -9.29732 -8.84627 -8.74663 -8.61261 -8.07349 -6.56586 -4.30781 2.35935 2.90345 3.17833 3.34110 3.35798 3.53819 3.56246 4.16754 4.18618 4.20877 4.41480 4.44686 4.66065 4.87315 4.89442 5.00075 5.13964 5.19924 5.22186 5.27029 5.38030 5.41778 5.45467 5.56612 5.64537 5.75570 6.03263 6.47729 6.59100 6.93360 7.04153 7.13024 7.15825 7.23239 7.59376 7.91919 8.20666 8.38841 8.65541 8.89128 9.43106 10.83584 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.043428 B = 0.003010 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.594172 B = 9299.057009 C = 9621.973911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.147 3.853 3 H 0.080 0.920 4 N -0.714 5.714 5 C 0.519 3.481 6 O -0.564 6.564 7 C -0.131 4.131 8 C -0.159 4.159 9 C 0.079 3.921 10 H 0.089 0.911 11 N -0.660 5.660 12 C 0.042 3.958 13 C 0.496 3.504 14 O -0.544 6.544 15 N -0.709 5.709 16 C 0.241 3.759 17 C -0.625 4.625 18 H 0.057 0.943 19 C 0.023 3.977 20 N -0.901 5.901 21 Si 1.075 2.925 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.286 1.286 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.089 0.911 28 H 0.400 0.600 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.355 0.645 34 H 0.099 0.901 35 H 0.058 0.942 36 H 0.392 0.608 37 H 0.016 0.984 38 H 0.017 0.983 39 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.976 -6.691 17.898 19.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.041 3.959 3 H 0.097 0.903 4 N -0.366 5.366 5 C 0.306 3.694 6 O -0.443 6.443 7 C -0.171 4.171 8 C -0.198 4.198 9 C -0.032 4.032 10 H 0.108 0.892 11 N -0.291 5.291 12 C -0.091 4.091 13 C 0.280 3.720 14 O -0.422 6.422 15 N -0.358 5.358 16 C 0.120 3.880 17 C -0.663 4.663 18 H 0.075 0.925 19 C -0.183 4.183 20 N -0.535 5.535 21 Si 0.903 3.097 22 H -0.205 1.205 23 H -0.213 1.213 24 H -0.213 1.213 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.108 0.892 28 H 0.235 0.765 29 H 0.120 0.880 30 H 0.119 0.881 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.176 0.824 34 H 0.117 0.883 35 H 0.076 0.924 36 H 0.225 0.775 37 H 0.034 0.966 38 H 0.035 0.965 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.199 -6.020 16.746 18.081 hybrid contribution 1.055 -0.666 1.682 2.094 sum 4.254 -6.686 18.428 20.060 Atomic orbital electron populations 1.22081 0.93279 1.02680 1.03462 1.20869 0.95510 0.96123 0.83366 0.90251 1.45694 1.32271 1.46450 1.12217 1.20206 0.80214 0.77982 0.91006 1.90762 1.67662 1.54250 1.31600 1.21558 1.01678 1.01084 0.92811 1.22488 0.97743 1.00389 0.99229 1.21864 0.93518 0.97336 0.90528 0.89238 1.60011 1.55540 1.12751 1.00838 1.21859 1.01892 0.95827 0.89511 1.20368 0.78363 0.88870 0.84349 1.90670 1.50881 1.15365 1.85306 1.46267 1.69992 1.11770 1.07730 1.19157 0.95538 0.91006 0.82328 1.22061 1.55490 0.95247 0.93508 0.92486 1.25883 0.93218 0.97649 1.01573 1.70767 1.44462 1.04858 1.33457 0.83451 0.76579 0.74585 0.75133 1.20529 1.21278 1.21259 0.92416 0.92521 0.89191 0.76452 0.88028 0.88128 0.90170 0.90594 0.82416 0.88326 0.92442 0.77479 0.96598 0.96495 0.91681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.21 9.31 37.16 0.35 -0.86 16 2 C 0.15 1.14 3.33 -68.37 -0.23 0.91 16 3 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 4 N -0.71 -5.93 5.12 -54.85 -0.28 -6.21 16 5 C 0.52 5.33 7.72 -11.87 -0.09 5.24 16 6 O -0.56 -8.12 17.78 5.56 0.10 -8.02 16 7 C -0.13 -0.99 6.03 -28.13 -0.17 -1.16 16 8 C -0.16 -1.12 5.32 -26.55 -0.14 -1.26 16 9 C 0.08 0.63 1.88 -67.58 -0.13 0.50 16 10 H 0.09 0.70 7.77 -51.93 -0.40 0.30 16 11 N -0.66 -7.03 5.51 -107.85 -0.59 -7.62 16 12 C 0.04 0.49 5.97 -4.97 -0.03 0.46 16 13 C 0.50 8.92 7.87 -10.98 -0.09 8.84 16 14 O -0.54 -12.03 16.20 5.56 0.09 -11.94 16 15 N -0.71 -13.98 5.55 -61.47 -0.34 -14.32 16 16 C 0.24 6.14 4.74 -5.19 -0.02 6.12 16 17 C -0.62 -16.73 9.28 -34.44 -0.32 -17.05 16 18 H 0.06 1.44 7.60 -52.48 -0.40 1.04 16 19 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 20 N -0.90 -26.84 13.65 55.43 0.76 -26.08 16 21 Si 1.08 23.86 29.90 -169.99 -5.08 18.78 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.29 -6.02 7.11 56.52 0.40 -5.62 16 24 H -0.29 -6.02 7.11 56.52 0.40 -5.62 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.09 0.84 7.88 -51.93 -0.41 0.43 16 28 H 0.40 3.06 8.66 -40.82 -0.35 2.70 16 29 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.53 7.38 -51.92 -0.38 0.15 16 32 H 0.08 0.54 8.13 -51.93 -0.42 0.12 16 33 H 0.36 4.02 8.18 -39.29 -0.32 3.70 16 34 H 0.10 1.01 8.06 -51.93 -0.42 0.59 16 35 H 0.06 0.55 7.39 -51.93 -0.38 0.17 16 36 H 0.39 6.61 8.32 -40.82 -0.34 6.27 16 37 H 0.02 0.45 8.01 -51.93 -0.42 0.03 16 38 H 0.02 0.48 8.01 -51.93 -0.42 0.06 16 39 H 0.27 8.21 7.22 -40.82 -0.29 7.92 16 LS Contribution 325.27 15.07 4.90 4.90 Total: -1.00 -33.89 325.27 -7.29 -41.18 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -5.87 Total: 7.08 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -0.97 Total: 2.27 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: -0.46 Total: -54.24 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: 0.19 Total: -19.96 kcal Atomic # 14 Polarization: 23.86 SS G_CDS: -5.08 Total: 18.78 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.89 -7.29 -41.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000392924155.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.080 kcal (2) G-P(sol) polarization free energy of solvation -33.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds