Wall clock time and date at job start Mon Mar 30 2020 05:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.30158 * 2 1 4 4 N 1.45759 * 109.29983 * 119.37981 * 2 1 3 5 5 C 1.33350 * 124.10717 * 139.40825 * 4 2 1 6 6 O 1.21282 * 118.24784 * 177.73584 * 5 4 2 7 7 C 1.50172 * 123.50958 * 357.75472 * 5 4 2 8 8 C 1.53007 * 110.00408 * 17.47139 * 7 5 4 9 9 C 1.52918 * 109.30265 * 240.41251 * 2 1 3 10 10 H 1.08993 * 109.60404 * 308.85946 * 9 2 1 11 11 N 1.46901 * 109.59929 * 69.18246 * 9 2 1 12 12 C 1.46896 * 110.99831 * 204.67462 * 11 9 2 13 13 C 1.50709 * 109.47179 * 179.97438 * 12 11 9 14 14 O 1.21281 * 119.99753 * 0.02562 * 13 12 11 15 15 N 1.34778 * 120.00069 * 180.02562 * 13 12 11 16 16 C 1.46493 * 119.99700 * 180.02562 * 15 13 12 17 17 C 1.50706 * 109.47128 * 179.97438 * 16 15 13 18 18 H 1.08005 * 119.99758 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00102 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00217 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99766 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47057 * 179.97438 * 21 19 17 23 23 H 1.48500 * 109.47389 * 300.00068 * 21 19 17 24 24 H 1.48504 * 109.47102 * 60.00417 * 21 19 17 25 25 H 1.09000 * 109.47344 * 179.58403 * 1 2 3 26 26 H 1.09000 * 109.47009 * 299.58451 * 1 2 3 27 27 H 1.09001 * 109.46947 * 59.57962 * 1 2 3 28 28 H 0.96999 * 117.94850 * 319.38849 * 4 2 1 29 29 H 1.09001 * 109.40292 * 137.70782 * 7 5 4 30 30 H 1.09001 * 109.40564 * 257.53954 * 7 5 4 31 31 H 1.09008 * 109.80208 * 191.53323 * 8 7 5 32 32 H 1.09004 * 109.51481 * 71.02795 * 8 7 5 33 33 H 1.00899 * 111.00212 * 80.72157 * 11 9 2 34 34 H 1.09000 * 109.47274 * 60.00200 * 12 11 9 35 35 H 1.08997 * 109.47798 * 299.99999 * 12 11 9 36 36 H 0.96998 * 120.00160 * 359.97438 * 15 13 12 37 37 H 1.09001 * 109.47786 * 60.00101 * 16 15 13 38 38 H 1.09006 * 109.47401 * 299.99686 * 16 15 13 39 39 H 0.97001 * 119.99646 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8903 1.0287 0.0000 4 7 2.0117 -0.6749 1.1987 5 6 3.0502 -1.5112 1.2198 6 8 3.3862 -1.9824 2.2856 7 6 3.8261 -1.9005 -0.0056 8 6 3.5519 -0.9069 -1.1364 9 6 2.0355 -0.7126 -1.2550 10 1 1.5484 -1.6834 -1.3456 11 7 1.7342 0.1024 -2.4395 12 6 1.6494 -0.7325 -3.6452 13 6 1.3391 0.1362 -4.8370 14 8 1.2026 1.3330 -4.6958 15 7 1.2134 -0.4168 -6.0596 16 6 0.9124 0.4277 -7.2181 17 6 0.8253 -0.4287 -8.4551 18 1 0.9793 -1.4955 -8.3852 19 6 0.5491 0.1494 -9.6759 20 7 0.3621 1.4484 -9.7610 21 14 0.4419 -0.9121 -11.2091 22 1 0.1354 -0.0562 -12.3833 23 1 1.7386 -1.6030 -11.4246 24 1 -0.6343 -1.9211 -11.0384 25 1 -0.3634 -1.0276 -0.0075 26 1 -0.3633 0.5074 0.8937 27 1 -0.3633 0.5204 -0.8862 28 1 1.5481 -0.5049 2.0336 29 1 4.8913 -1.9019 0.2256 30 1 3.5235 -2.8980 -0.3241 31 1 3.9464 -1.2971 -2.0746 32 1 4.0272 0.0467 -0.9064 33 1 2.4157 0.8373 -2.5557 34 1 0.8590 -1.4725 -3.5199 35 1 2.6008 -1.2403 -3.8032 36 1 1.3230 -1.3740 -6.1726 37 1 1.7030 1.1675 -7.3438 38 1 -0.0389 0.9359 -7.0599 39 1 0.4181 1.9997 -8.9648 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000392924155.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:11 Heat of formation + Delta-G solvation = -117.782764 kcal Electronic energy + Delta-G solvation = -20344.659248 eV Core-core repulsion = 17091.996302 eV Total energy + Delta-G solvation = -3252.662946 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.51916 -40.53934 -38.60145 -36.44844 -35.71594 -34.42232 -33.66923 -31.61335 -29.52800 -27.86659 -25.95942 -24.55635 -23.96756 -22.90160 -21.49335 -20.45599 -19.33052 -18.23592 -17.72480 -17.33145 -17.05033 -16.57199 -16.35901 -15.75926 -15.61232 -15.37468 -15.25446 -14.93974 -14.54328 -14.28571 -14.05435 -13.87262 -13.50595 -13.39612 -13.08099 -13.01876 -12.70675 -12.52020 -12.40002 -12.08708 -11.93221 -11.91236 -11.00450 -10.88303 -10.75574 -10.74052 -10.13209 -9.92943 -9.41119 -8.78014 -6.53790 1.57233 1.58300 1.65279 1.74096 1.84226 2.12013 2.40140 2.58956 3.09583 3.17190 3.55943 3.57632 3.79851 3.90365 4.00619 4.25121 4.32353 4.35155 4.39587 4.45943 4.60706 4.80585 4.81685 4.87150 4.97829 4.99089 5.06512 5.11343 5.38354 5.47837 5.56101 5.77886 5.84292 6.10666 6.23458 6.33828 6.35517 6.85952 7.16617 7.26733 7.46482 8.61497 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.043428 B = 0.003010 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.594172 B = 9299.057009 C = 9621.973911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.149 3.851 3 H 0.079 0.921 4 N -0.704 5.704 5 C 0.514 3.486 6 O -0.611 6.611 7 C -0.125 4.125 8 C -0.151 4.151 9 C 0.083 3.917 10 H 0.100 0.900 11 N -0.671 5.671 12 C 0.059 3.941 13 C 0.493 3.507 14 O -0.591 6.591 15 N -0.706 5.706 16 C 0.254 3.746 17 C -0.629 4.629 18 H 0.077 0.923 19 C -0.034 4.034 20 N -0.932 5.932 21 Si 1.128 2.872 22 H -0.288 1.288 23 H -0.263 1.263 24 H -0.264 1.264 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.402 0.598 29 H 0.107 0.893 30 H 0.116 0.884 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.351 0.649 34 H 0.123 0.877 35 H 0.091 0.909 36 H 0.410 0.590 37 H -0.017 1.017 38 H -0.019 1.019 39 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.456 -9.212 17.993 20.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.044 3.956 3 H 0.097 0.903 4 N -0.355 5.355 5 C 0.303 3.697 6 O -0.494 6.494 7 C -0.165 4.165 8 C -0.191 4.191 9 C -0.027 4.027 10 H 0.118 0.882 11 N -0.303 5.303 12 C -0.073 4.073 13 C 0.280 3.720 14 O -0.471 6.471 15 N -0.357 5.357 16 C 0.130 3.870 17 C -0.667 4.667 18 H 0.095 0.905 19 C -0.232 4.232 20 N -0.568 5.568 21 Si 0.948 3.052 22 H -0.214 1.214 23 H -0.188 1.188 24 H -0.188 1.188 25 H 0.079 0.921 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.238 0.762 29 H 0.125 0.875 30 H 0.135 0.865 31 H 0.111 0.889 32 H 0.093 0.907 33 H 0.171 0.829 34 H 0.141 0.859 35 H 0.109 0.891 36 H 0.246 0.754 37 H 0.000 1.000 38 H -0.001 1.001 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.676 -8.572 16.882 19.287 hybrid contribution 0.882 0.185 1.743 1.962 sum 4.557 -8.387 18.626 20.929 Atomic orbital electron populations 1.22016 0.93072 1.02767 1.03170 1.20861 0.95563 0.96017 0.83132 0.90311 1.45665 1.31642 1.45599 1.12581 1.20723 0.80269 0.77469 0.91238 1.90745 1.69043 1.56165 1.33449 1.21558 1.01558 1.01884 0.91515 1.22428 0.96777 1.00303 0.99554 1.21861 0.94434 0.97220 0.89205 0.88151 1.59964 1.56023 1.13134 1.01204 1.21777 1.04270 0.94589 0.86628 1.21535 0.76331 0.88990 0.85153 1.90652 1.52494 1.17967 1.86003 1.46033 1.70540 1.12081 1.07048 1.18620 0.92620 0.91020 0.84692 1.22456 1.54192 0.96293 0.93752 0.90480 1.27614 0.92097 0.97858 1.05632 1.70911 1.47108 1.06191 1.32551 0.82807 0.78299 0.73328 0.70807 1.21406 1.18770 1.18844 0.92081 0.91545 0.90797 0.76162 0.87504 0.86546 0.88881 0.90740 0.82919 0.85867 0.89104 0.75446 0.99951 1.00094 0.93659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.31 71.98 0.67 -1.41 16 2 C 0.15 2.03 3.33 45.10 0.15 2.18 16 3 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 4 N -0.70 -10.57 5.12 -446.64 -2.29 -12.86 16 5 C 0.51 9.77 7.72 87.71 0.68 10.45 16 6 O -0.61 -17.24 17.78 -3.04 -0.05 -17.30 16 7 C -0.12 -1.55 6.03 29.68 0.18 -1.37 16 8 C -0.15 -1.66 5.32 30.71 0.16 -1.50 16 9 C 0.08 1.09 1.88 45.00 0.08 1.18 16 10 H 0.10 1.16 7.77 -2.39 -0.02 1.14 16 11 N -0.67 -12.77 5.51 -495.13 -2.73 -15.50 16 12 C 0.06 1.19 5.97 85.56 0.51 1.71 16 13 C 0.49 17.25 7.87 87.66 0.69 17.94 16 14 O -0.59 -26.56 16.20 -3.03 -0.05 -26.61 16 15 N -0.71 -27.35 5.55 -466.77 -2.59 -29.94 16 16 C 0.25 13.31 4.74 85.64 0.41 13.71 16 17 C -0.63 -33.48 9.28 25.60 0.24 -33.24 16 18 H 0.08 3.72 7.60 -2.91 -0.02 3.69 16 19 C -0.03 -1.85 5.46 84.65 0.46 -1.39 16 20 N -0.93 -56.98 13.65 21.45 0.29 -56.69 16 21 Si 1.13 46.74 29.90 68.60 2.05 48.79 16 22 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 23 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 24 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 25 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.07 1.30 7.88 -2.39 -0.02 1.28 16 28 H 0.40 5.67 8.66 -92.71 -0.80 4.87 16 29 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.09 0.84 7.38 -2.38 -0.02 0.83 16 32 H 0.07 0.87 8.13 -2.39 -0.02 0.85 16 33 H 0.35 7.37 8.18 -89.69 -0.73 6.64 16 34 H 0.12 1.99 8.06 -2.39 -0.02 1.97 16 35 H 0.09 1.32 7.39 -2.39 -0.02 1.30 16 36 H 0.41 12.87 8.32 -92.71 -0.77 12.10 16 37 H -0.02 -1.01 8.01 -2.39 -0.02 -1.03 16 38 H -0.02 -1.11 8.01 -2.38 -0.02 -1.13 16 39 H 0.25 16.10 7.22 -92.71 -0.67 15.43 16 Total: -1.00 -76.57 325.27 -2.26 -78.83 By element: Atomic # 1 Polarization: 24.14 SS G_CDS: -1.13 Total: 23.02 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: 4.23 Total: 8.25 kcal Atomic # 7 Polarization: -107.67 SS G_CDS: -7.32 Total: -114.98 kcal Atomic # 8 Polarization: -43.80 SS G_CDS: -0.10 Total: -43.91 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.05 Total: 48.79 kcal Total: -76.57 -2.26 -78.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000392924155.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.949 kcal (2) G-P(sol) polarization free energy of solvation -76.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds