Wall clock time and date at job start Mon Mar 30 2020 05:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.12855 * 2 1 4 4 N 1.45751 * 109.29888 * 119.48661 * 2 1 3 5 5 C 1.33356 * 124.10788 * 101.21916 * 4 2 1 6 6 O 1.21280 * 118.24228 * 182.22360 * 5 4 2 7 7 C 1.50166 * 123.50877 * 2.23656 * 5 4 2 8 8 C 1.53056 * 109.89528 * 342.42211 * 7 5 4 9 9 C 1.52920 * 109.30103 * 240.51835 * 2 1 3 10 10 H 1.09002 * 109.59943 * 170.51764 * 9 2 1 11 11 N 1.46901 * 109.60081 * 50.19920 * 9 2 1 12 12 C 1.46902 * 110.99844 * 154.99667 * 11 9 2 13 13 C 1.50702 * 109.47027 * 179.97438 * 12 11 9 14 14 O 1.21283 * 120.00262 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99928 * 179.72353 * 13 12 11 16 16 C 1.46499 * 120.00199 * 180.27479 * 15 13 12 17 17 C 1.50694 * 109.47550 * 180.02562 * 16 15 13 18 18 H 1.08008 * 119.99963 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00446 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00374 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99796 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47502 * 89.99760 * 21 19 17 23 23 H 1.48498 * 109.47116 * 209.99875 * 21 19 17 24 24 H 1.48503 * 109.46936 * 329.99405 * 21 19 17 25 25 H 1.09005 * 109.46991 * 179.47706 * 1 2 3 26 26 H 1.08997 * 109.47378 * 299.47676 * 1 2 3 27 27 H 1.09007 * 109.46897 * 59.48011 * 1 2 3 28 28 H 0.97000 * 117.94382 * 281.23680 * 4 2 1 29 29 H 1.09007 * 109.39929 * 102.55006 * 7 5 4 30 30 H 1.09000 * 109.40439 * 222.37915 * 7 5 4 31 31 H 1.08994 * 109.65768 * 289.15196 * 8 7 5 32 32 H 1.09003 * 109.68094 * 168.62924 * 8 7 5 33 33 H 1.00902 * 111.00235 * 31.04904 * 11 9 2 34 34 H 1.09004 * 109.47131 * 60.00016 * 12 11 9 35 35 H 1.08994 * 109.47471 * 299.99766 * 12 11 9 36 36 H 0.97000 * 120.00317 * 0.28382 * 15 13 12 37 37 H 1.08998 * 109.47134 * 300.00670 * 16 15 13 38 38 H 1.09002 * 109.46857 * 59.99862 * 16 15 13 39 39 H 0.97000 * 120.00464 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8872 1.0298 0.0000 4 7 2.0117 -0.6771 1.1974 5 6 2.4616 -1.9323 1.2169 6 8 2.7991 -2.4046 2.2818 7 6 2.5730 -2.7922 -0.0092 8 6 1.7189 -2.2058 -1.1359 9 6 2.0355 -0.7103 -1.2564 10 1 3.1122 -0.5681 -1.3486 11 7 1.3623 -0.1578 -2.4394 12 6 2.1803 -0.3436 -3.6454 13 6 1.4586 0.2337 -4.8357 14 8 0.3703 0.7496 -4.6935 15 7 2.0254 0.1821 -6.0575 16 6 1.3266 0.7487 -7.2137 17 6 2.1678 0.5624 -8.4500 18 1 3.1270 0.0707 -8.3815 19 6 1.7126 1.0187 -9.6689 20 7 2.4470 0.8566 -10.7477 21 14 0.0533 1.8685 -9.7876 22 1 0.2297 3.3292 -9.5866 23 1 -0.5348 1.6208 -11.1284 24 1 -0.8540 1.3309 -8.7421 25 1 -0.3633 -1.0277 -0.0094 26 1 -0.3634 0.5057 0.8946 27 1 -0.3633 0.5219 -0.8853 28 1 2.0043 -0.1838 2.0326 29 1 3.6144 -2.8341 -0.3286 30 1 2.2242 -3.7987 0.2215 31 1 0.6626 -2.3398 -0.9029 32 1 1.9546 -2.7076 -2.0744 33 1 1.1340 0.8157 -2.3039 34 1 2.3532 -1.4077 -3.8067 35 1 3.1361 0.1646 -3.5180 36 1 2.8959 -0.2302 -6.1713 37 1 0.3709 0.2413 -7.3450 38 1 1.1535 1.8121 -7.0483 39 1 2.1266 1.1772 -11.6053 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000392924160.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:19 Heat of formation + Delta-G solvation = -77.421374 kcal Electronic energy + Delta-G solvation = -20415.083489 eV Core-core repulsion = 17164.170745 eV Total energy + Delta-G solvation = -3250.912744 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.82617 -39.12143 -37.76982 -34.89026 -34.27033 -32.91098 -32.40096 -30.87446 -28.59343 -26.99873 -25.19439 -23.90907 -22.26557 -21.74827 -20.00619 -19.03929 -17.50273 -17.40602 -16.80364 -16.09101 -16.02935 -15.58907 -15.35204 -14.81072 -14.51330 -14.27004 -14.01750 -13.88551 -13.61150 -13.14123 -12.79102 -12.55267 -12.36040 -12.33847 -12.06697 -11.80601 -11.77481 -11.15653 -11.10526 -11.05852 -10.80074 -10.01446 -10.00729 -9.54516 -9.45952 -9.28878 -8.82250 -8.67220 -8.20388 -6.25530 -4.28237 2.35911 2.89109 3.15016 3.23734 3.30450 3.38677 3.52329 4.07240 4.19147 4.29764 4.32128 4.44115 4.68348 4.85080 4.94987 5.05370 5.09431 5.11303 5.27317 5.30534 5.39737 5.43136 5.51069 5.57531 5.66691 5.86724 6.09343 6.43960 6.58970 6.77998 7.01088 7.02333 7.11077 7.16620 7.34479 7.91039 8.08429 8.45731 8.70476 8.86991 9.34377 10.86384 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.046094 B = 0.003162 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.305024 B = 8853.331350 C = 9248.062242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.134 3.866 3 H 0.085 0.915 4 N -0.713 5.713 5 C 0.520 3.480 6 O -0.562 6.562 7 C -0.136 4.136 8 C -0.116 4.116 9 C 0.077 3.923 10 H 0.056 0.944 11 N -0.659 5.659 12 C 0.039 3.961 13 C 0.499 3.501 14 O -0.546 6.546 15 N -0.706 5.706 16 C 0.222 3.778 17 C -0.545 4.545 18 H 0.079 0.921 19 C 0.077 3.923 20 N -0.892 5.892 21 Si 0.877 3.123 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.260 1.260 25 H 0.064 0.936 26 H 0.055 0.945 27 H 0.084 0.916 28 H 0.399 0.601 29 H 0.100 0.900 30 H 0.103 0.897 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.354 0.646 34 H 0.100 0.900 35 H 0.059 0.941 36 H 0.396 0.604 37 H 0.026 0.974 38 H 0.020 0.980 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.188 -3.047 20.517 20.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.029 3.971 3 H 0.103 0.897 4 N -0.365 5.365 5 C 0.308 3.692 6 O -0.441 6.441 7 C -0.176 4.176 8 C -0.154 4.154 9 C -0.033 4.033 10 H 0.074 0.926 11 N -0.292 5.292 12 C -0.093 4.093 13 C 0.283 3.717 14 O -0.424 6.424 15 N -0.356 5.356 16 C 0.100 3.900 17 C -0.583 4.583 18 H 0.097 0.903 19 C -0.126 4.126 20 N -0.529 5.529 21 Si 0.704 3.296 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.185 1.185 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.103 0.897 28 H 0.235 0.765 29 H 0.118 0.882 30 H 0.122 0.878 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.175 0.825 34 H 0.118 0.882 35 H 0.076 0.924 36 H 0.230 0.770 37 H 0.043 0.957 38 H 0.038 0.962 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.792 -3.558 20.593 20.913 hybrid contribution 0.358 1.185 -0.006 1.238 sum -0.434 -2.373 20.587 20.728 Atomic orbital electron populations 1.22250 0.93738 1.03412 1.02819 1.21073 0.95700 0.95984 0.84357 0.89718 1.45541 1.64891 1.14011 1.12031 1.20280 0.75862 0.81926 0.91134 1.90761 1.49960 1.71624 1.31797 1.21667 1.03091 0.99883 0.92998 1.21752 1.00975 0.94182 0.98483 1.21764 0.96756 0.95560 0.89225 0.92604 1.60184 1.43960 1.24813 1.00289 1.21904 0.94848 1.02702 0.89863 1.20348 0.86491 0.80398 0.84468 1.90662 1.20901 1.45439 1.85386 1.46172 1.22582 1.59135 1.07679 1.19478 0.93537 0.93702 0.83329 1.21090 1.05936 1.40693 0.90567 0.90273 1.24804 0.97436 0.95072 0.95332 1.69877 1.37750 1.46007 0.99298 0.86808 0.84361 0.80463 0.78000 1.19874 1.20890 1.18460 0.91724 0.92633 0.89745 0.76520 0.88182 0.87837 0.90016 0.90054 0.82542 0.88173 0.92357 0.77044 0.95659 0.96218 0.92220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.21 9.04 37.16 0.34 -0.88 16 2 C 0.13 0.93 3.33 -68.37 -0.23 0.70 16 3 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 4 N -0.71 -5.59 5.03 -54.86 -0.28 -5.87 16 5 C 0.52 5.27 7.71 -11.87 -0.09 5.18 16 6 O -0.56 -8.01 17.78 5.56 0.10 -7.91 16 7 C -0.14 -1.05 6.03 -28.11 -0.17 -1.22 16 8 C -0.12 -0.89 5.52 -26.52 -0.15 -1.03 16 9 C 0.08 0.60 2.26 -67.58 -0.15 0.45 16 10 H 0.06 0.41 7.79 -51.93 -0.40 0.01 16 11 N -0.66 -6.72 5.10 -107.84 -0.55 -7.27 16 12 C 0.04 0.44 5.97 -4.97 -0.03 0.41 16 13 C 0.50 8.51 7.87 -10.98 -0.09 8.42 16 14 O -0.55 -11.40 16.20 5.55 0.09 -11.31 16 15 N -0.71 -13.26 5.55 -61.47 -0.34 -13.60 16 16 C 0.22 5.24 4.50 -5.20 -0.02 5.22 16 17 C -0.55 -14.54 9.83 -34.44 -0.34 -14.88 16 18 H 0.08 2.19 7.84 -52.48 -0.41 1.78 16 19 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 20 N -0.89 -26.06 13.96 55.43 0.77 -25.29 16 21 Si 0.88 21.00 27.47 -169.99 -4.67 16.33 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 25 H 0.06 0.53 6.51 -51.93 -0.34 0.20 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.08 0.71 6.90 -51.93 -0.36 0.35 16 28 H 0.40 2.80 8.80 -40.82 -0.36 2.44 16 29 H 0.10 0.66 8.14 -51.92 -0.42 0.24 16 30 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 0.68 6.38 -51.93 -0.33 0.35 16 32 H 0.08 0.61 7.41 -51.93 -0.38 0.23 16 33 H 0.35 3.69 7.34 -39.29 -0.29 3.40 16 34 H 0.10 0.98 7.42 -51.93 -0.39 0.60 16 35 H 0.06 0.55 8.06 -51.93 -0.42 0.13 16 36 H 0.40 6.45 8.32 -40.82 -0.34 6.11 16 37 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 38 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 39 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 317.79 15.07 4.79 4.79 Total: -1.00 -33.56 317.79 -6.76 -40.32 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -5.64 Total: 5.38 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -1.03 Total: 4.42 kcal Atomic # 7 Polarization: -51.63 SS G_CDS: -0.39 Total: -52.02 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: 0.19 Total: -19.22 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.67 Total: 16.33 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.56 -6.76 -40.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000392924160.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.102 kcal (2) G-P(sol) polarization free energy of solvation -33.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds