Wall clock time and date at job start Mon Mar 30 2020 05:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.12855 * 2 1 4 4 N 1.45751 * 109.29888 * 119.48661 * 2 1 3 5 5 C 1.33356 * 124.10788 * 101.21916 * 4 2 1 6 6 O 1.21280 * 118.24228 * 182.22360 * 5 4 2 7 7 C 1.50166 * 123.50877 * 2.23656 * 5 4 2 8 8 C 1.53056 * 109.89528 * 342.42211 * 7 5 4 9 9 C 1.52920 * 109.30103 * 240.51835 * 2 1 3 10 10 H 1.09002 * 109.59943 * 170.51764 * 9 2 1 11 11 N 1.46901 * 109.60081 * 50.19920 * 9 2 1 12 12 C 1.46902 * 110.99844 * 154.99667 * 11 9 2 13 13 C 1.50702 * 109.47027 * 179.97438 * 12 11 9 14 14 O 1.21283 * 120.00262 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99928 * 179.72353 * 13 12 11 16 16 C 1.46499 * 120.00199 * 180.27479 * 15 13 12 17 17 C 1.50694 * 109.47550 * 180.02562 * 16 15 13 18 18 H 1.08008 * 119.99963 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00446 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00374 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99796 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47502 * 89.99760 * 21 19 17 23 23 H 1.48498 * 109.47116 * 209.99875 * 21 19 17 24 24 H 1.48503 * 109.46936 * 329.99405 * 21 19 17 25 25 H 1.09005 * 109.46991 * 179.47706 * 1 2 3 26 26 H 1.08997 * 109.47378 * 299.47676 * 1 2 3 27 27 H 1.09007 * 109.46897 * 59.48011 * 1 2 3 28 28 H 0.97000 * 117.94382 * 281.23680 * 4 2 1 29 29 H 1.09007 * 109.39929 * 102.55006 * 7 5 4 30 30 H 1.09000 * 109.40439 * 222.37915 * 7 5 4 31 31 H 1.08994 * 109.65768 * 289.15196 * 8 7 5 32 32 H 1.09003 * 109.68094 * 168.62924 * 8 7 5 33 33 H 1.00902 * 111.00235 * 31.04904 * 11 9 2 34 34 H 1.09004 * 109.47131 * 60.00016 * 12 11 9 35 35 H 1.08994 * 109.47471 * 299.99766 * 12 11 9 36 36 H 0.97000 * 120.00317 * 0.28382 * 15 13 12 37 37 H 1.08998 * 109.47134 * 300.00670 * 16 15 13 38 38 H 1.09002 * 109.46857 * 59.99862 * 16 15 13 39 39 H 0.97000 * 120.00464 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8872 1.0298 0.0000 4 7 2.0117 -0.6771 1.1974 5 6 2.4616 -1.9323 1.2169 6 8 2.7991 -2.4046 2.2818 7 6 2.5730 -2.7922 -0.0092 8 6 1.7189 -2.2058 -1.1359 9 6 2.0355 -0.7103 -1.2564 10 1 3.1122 -0.5681 -1.3486 11 7 1.3623 -0.1578 -2.4394 12 6 2.1803 -0.3436 -3.6454 13 6 1.4586 0.2337 -4.8357 14 8 0.3703 0.7496 -4.6935 15 7 2.0254 0.1821 -6.0575 16 6 1.3266 0.7487 -7.2137 17 6 2.1678 0.5624 -8.4500 18 1 3.1270 0.0707 -8.3815 19 6 1.7126 1.0187 -9.6689 20 7 2.4470 0.8566 -10.7477 21 14 0.0533 1.8685 -9.7876 22 1 0.2297 3.3292 -9.5866 23 1 -0.5348 1.6208 -11.1284 24 1 -0.8540 1.3309 -8.7421 25 1 -0.3633 -1.0277 -0.0094 26 1 -0.3634 0.5057 0.8946 27 1 -0.3633 0.5219 -0.8853 28 1 2.0043 -0.1838 2.0326 29 1 3.6144 -2.8341 -0.3286 30 1 2.2242 -3.7987 0.2215 31 1 0.6626 -2.3398 -0.9029 32 1 1.9546 -2.7076 -2.0744 33 1 1.1340 0.8157 -2.3039 34 1 2.3532 -1.4077 -3.8067 35 1 3.1361 0.1646 -3.5180 36 1 2.8959 -0.2302 -6.1713 37 1 0.3709 0.2413 -7.3450 38 1 1.1535 1.8121 -7.0483 39 1 2.1266 1.1772 -11.6053 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000392924160.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:18 Heat of formation + Delta-G solvation = -105.600491 kcal Electronic energy + Delta-G solvation = -20416.305428 eV Core-core repulsion = 17164.170745 eV Total energy + Delta-G solvation = -3252.134683 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.55078 -40.46539 -38.63489 -36.17809 -35.54020 -34.36885 -33.57367 -31.67641 -30.18907 -28.00224 -26.13695 -24.58402 -23.81250 -22.69275 -21.43493 -19.81057 -19.03605 -18.15032 -17.93524 -17.30235 -17.13314 -16.64261 -16.51102 -16.09925 -15.62489 -15.42690 -14.96275 -14.73211 -14.63393 -14.46050 -14.30609 -13.94710 -13.52855 -13.18435 -13.01201 -12.84895 -12.71273 -12.62553 -12.46657 -11.92095 -11.80384 -11.72240 -11.63240 -10.90372 -10.78639 -10.72964 -10.15639 -9.87525 -9.41154 -8.38552 -6.45322 1.34068 1.36956 1.49008 1.59832 1.81446 2.17629 2.29487 2.46126 2.97265 3.17778 3.52436 3.68533 3.82402 3.98105 4.08566 4.25524 4.38257 4.40806 4.46661 4.54524 4.65583 4.81704 4.83508 4.92986 4.98131 5.06796 5.07497 5.25796 5.29219 5.48580 5.57280 5.79139 5.88098 6.12114 6.29943 6.35884 6.56819 6.92418 7.18250 7.18599 7.49087 8.76165 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.046094 B = 0.003162 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.305024 B = 8853.331350 C = 9248.062242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.138 3.862 3 H 0.105 0.895 4 N -0.703 5.703 5 C 0.516 3.484 6 O -0.610 6.610 7 C -0.130 4.130 8 C -0.112 4.112 9 C 0.080 3.920 10 H 0.071 0.929 11 N -0.669 5.669 12 C 0.053 3.947 13 C 0.497 3.503 14 O -0.585 6.585 15 N -0.708 5.708 16 C 0.233 3.767 17 C -0.546 4.546 18 H 0.060 0.940 19 C 0.025 3.975 20 N -0.933 5.933 21 Si 0.938 3.062 22 H -0.265 1.265 23 H -0.276 1.276 24 H -0.259 1.259 25 H 0.053 0.947 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.404 0.596 29 H 0.116 0.884 30 H 0.106 0.894 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.353 0.647 34 H 0.122 0.878 35 H 0.088 0.912 36 H 0.409 0.591 37 H 0.010 0.990 38 H 0.011 0.989 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.209 -2.800 21.518 21.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.033 3.967 3 H 0.123 0.877 4 N -0.353 5.353 5 C 0.305 3.695 6 O -0.493 6.493 7 C -0.170 4.170 8 C -0.150 4.150 9 C -0.030 4.030 10 H 0.089 0.911 11 N -0.303 5.303 12 C -0.078 4.078 13 C 0.285 3.715 14 O -0.466 6.466 15 N -0.359 5.359 16 C 0.109 3.891 17 C -0.583 4.583 18 H 0.078 0.922 19 C -0.175 4.175 20 N -0.572 5.572 21 Si 0.762 3.238 22 H -0.190 1.190 23 H -0.201 1.201 24 H -0.184 1.184 25 H 0.072 0.928 26 H 0.082 0.918 27 H 0.094 0.906 28 H 0.240 0.760 29 H 0.134 0.866 30 H 0.125 0.875 31 H 0.091 0.909 32 H 0.106 0.894 33 H 0.173 0.827 34 H 0.140 0.860 35 H 0.105 0.895 36 H 0.244 0.756 37 H 0.028 0.972 38 H 0.029 0.971 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.758 -3.302 21.606 21.870 hybrid contribution 0.369 1.099 -0.283 1.194 sum -0.389 -2.203 21.323 21.440 Atomic orbital electron populations 1.22195 0.94115 1.02706 1.02817 1.21128 0.95284 0.96733 0.83589 0.87718 1.45512 1.63662 1.13467 1.12655 1.20722 0.75157 0.82440 0.91182 1.90743 1.52351 1.72679 1.33563 1.21653 1.04042 0.99489 0.91783 1.21715 1.00421 0.94231 0.98641 1.21780 0.97347 0.95389 0.88437 0.91142 1.60153 1.44499 1.24972 1.00706 1.21834 0.94931 1.03675 0.87401 1.21342 0.86033 0.79121 0.85037 1.90644 1.22895 1.47060 1.85972 1.46025 1.23085 1.59501 1.07293 1.19042 0.92731 0.93261 0.84063 1.21327 1.05485 1.39673 0.91864 0.92215 1.25616 1.00861 0.95909 0.95155 1.69983 1.39664 1.47546 0.99988 0.85852 0.80179 0.79674 0.78142 1.18998 1.20102 1.18367 0.92761 0.91808 0.90579 0.76027 0.86632 0.87535 0.90940 0.89410 0.82673 0.86043 0.89472 0.75571 0.97176 0.97099 0.91914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 9.04 71.98 0.65 -1.44 16 2 C 0.14 1.55 3.33 45.11 0.15 1.70 16 3 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 4 N -0.70 -9.66 5.03 -446.66 -2.25 -11.91 16 5 C 0.52 9.69 7.71 87.71 0.68 10.37 16 6 O -0.61 -17.10 17.78 -3.03 -0.05 -17.15 16 7 C -0.13 -1.71 6.03 29.70 0.18 -1.53 16 8 C -0.11 -1.42 5.52 30.73 0.17 -1.25 16 9 C 0.08 1.00 2.26 45.00 0.10 1.10 16 10 H 0.07 0.74 7.79 -2.39 -0.02 0.72 16 11 N -0.67 -11.76 5.10 -495.11 -2.52 -14.29 16 12 C 0.05 1.02 5.97 85.56 0.51 1.53 16 13 C 0.50 16.03 7.87 87.66 0.69 16.72 16 14 O -0.59 -23.80 16.20 -3.04 -0.05 -23.85 16 15 N -0.71 -25.66 5.55 -466.79 -2.59 -28.25 16 16 C 0.23 10.91 4.50 85.63 0.38 11.30 16 17 C -0.55 -29.18 9.83 25.60 0.25 -28.93 16 18 H 0.06 3.35 7.84 -2.91 -0.02 3.32 16 19 C 0.02 1.37 5.47 84.66 0.46 1.83 16 20 N -0.93 -54.87 13.96 21.45 0.30 -54.58 16 21 Si 0.94 43.14 27.47 68.60 1.88 45.03 16 22 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 23 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 24 H -0.26 -11.81 6.54 99.48 0.65 -11.16 16 25 H 0.05 0.83 6.51 -2.38 -0.02 0.81 16 26 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.08 1.16 6.90 -2.38 -0.02 1.15 16 28 H 0.40 4.99 8.80 -92.71 -0.82 4.18 16 29 H 0.12 1.19 8.14 -2.38 -0.02 1.17 16 30 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.07 1.08 6.38 -2.39 -0.02 1.06 16 32 H 0.09 1.04 7.41 -2.39 -0.02 1.02 16 33 H 0.35 6.48 7.34 -89.69 -0.66 5.82 16 34 H 0.12 1.88 7.42 -2.38 -0.02 1.86 16 35 H 0.09 1.24 8.06 -2.39 -0.02 1.22 16 36 H 0.41 12.66 8.32 -92.71 -0.77 11.89 16 37 H 0.01 0.51 7.20 -2.39 -0.02 0.50 16 38 H 0.01 0.54 7.57 -2.39 -0.02 0.52 16 39 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -72.86 317.79 -2.26 -75.12 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: -1.21 Total: 18.49 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: 4.23 Total: 11.39 kcal Atomic # 7 Polarization: -101.96 SS G_CDS: -7.06 Total: -109.02 kcal Atomic # 8 Polarization: -40.90 SS G_CDS: -0.10 Total: -41.00 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 1.88 Total: 45.03 kcal Total: -72.86 -2.26 -75.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000392924160.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.483 kcal (2) G-P(sol) polarization free energy of solvation -72.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds