Wall clock time and date at job start Mon Mar 30 2020 05:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86803 * 120.00432 * 2 1 4 4 H 1.48500 * 109.47323 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46722 * 300.00327 * 3 2 1 6 6 H 1.48494 * 109.46814 * 59.99705 * 3 2 1 7 7 C 1.37880 * 119.99979 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00383 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99823 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47196 * 180.02562 * 9 7 2 11 11 C 1.34770 * 120.00157 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00007 * 359.97438 * 11 10 9 13 13 C 1.50701 * 120.00204 * 179.97438 * 11 10 9 14 14 N 1.46903 * 109.47245 * 179.97438 * 13 11 10 15 15 C 1.46893 * 110.99924 * 179.97438 * 14 13 11 16 16 C 1.50706 * 109.47176 * 179.97438 * 15 14 13 17 17 O 1.21279 * 119.99507 * 0.02562 * 16 15 14 18 18 N 1.34774 * 120.00020 * 180.02562 * 16 15 14 19 19 C 1.46496 * 119.99544 * 180.02562 * 18 16 15 20 20 C 1.53005 * 109.47059 * 180.02562 * 19 18 16 21 21 C 1.53004 * 117.49759 * 243.62370 * 20 19 18 22 22 C 1.52996 * 117.50145 * 175.00164 * 20 19 18 23 23 H 0.97001 * 119.99793 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.46785 * 60.00030 * 9 7 2 25 25 H 1.08998 * 109.46887 * 300.00381 * 9 7 2 26 26 H 0.97003 * 119.99785 * 359.97438 * 10 9 7 27 27 H 1.08993 * 109.46849 * 60.00251 * 13 11 10 28 28 H 1.09003 * 109.46941 * 299.99576 * 13 11 10 29 29 H 1.00904 * 110.99923 * 56.04791 * 14 13 11 30 30 H 1.09001 * 109.46739 * 60.00281 * 15 14 13 31 31 H 1.09000 * 109.47767 * 300.00540 * 15 14 13 32 32 H 0.96994 * 119.99756 * 0.02562 * 18 16 15 33 33 H 1.08996 * 109.47366 * 299.99598 * 19 18 16 34 34 H 1.08992 * 109.47635 * 60.00246 * 19 18 16 35 35 H 1.09001 * 115.54850 * 29.32521 * 20 19 18 36 36 H 1.08996 * 117.49992 * 359.97438 * 21 20 19 37 37 H 1.09001 * 117.49660 * 145.01544 * 21 20 19 38 38 H 1.09007 * 117.49716 * 214.97980 * 22 20 19 39 39 H 1.08993 * 117.49910 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2028 -3.6128 -0.0005 11 6 1.7536 -4.8834 -0.0011 12 8 0.5612 -5.1050 -0.0011 13 6 2.7328 -6.0289 -0.0016 14 7 1.9983 -7.3011 -0.0015 15 6 2.9227 -8.4427 -0.0027 16 6 2.1346 -9.7272 -0.0019 17 8 0.9222 -9.6948 -0.0010 18 7 2.7770 -10.9120 -0.0022 19 6 2.0109 -12.1606 -0.0020 20 6 2.9736 -13.3498 -0.0018 21 6 2.9496 -14.2784 -1.2176 22 6 2.3675 -14.7495 0.1166 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8896 26 1 3.1565 -3.4355 -0.0009 27 1 3.3595 -5.9715 0.8883 28 1 3.3594 -5.9708 -0.8917 29 1 1.3615 -7.3510 -0.7827 30 1 3.5513 -8.4020 0.8869 31 1 3.5500 -8.4014 -0.8931 32 1 3.7466 -10.9378 -0.0026 33 1 1.3833 -12.2017 0.8882 34 1 1.3826 -12.2016 -0.8917 35 1 3.9358 -13.1755 0.4798 36 1 2.2476 -14.0425 -2.0173 37 1 3.8961 -14.7152 -1.5360 38 1 2.9311 -15.4963 0.6760 39 1 1.2829 -14.8233 0.1949 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393071519.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:16 Heat of formation + Delta-G solvation = -50.501072 kcal Electronic energy + Delta-G solvation = -19206.823168 eV Core-core repulsion = 15957.077776 eV Total energy + Delta-G solvation = -3249.745392 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.95052 -38.77884 -37.91311 -35.32182 -34.36448 -34.06672 -32.29810 -29.57099 -27.76852 -26.47514 -24.16497 -22.87286 -22.21063 -21.42991 -20.53468 -19.66900 -17.81008 -16.86464 -16.74338 -16.26227 -15.82216 -15.38047 -15.16016 -14.91131 -14.58897 -14.29223 -13.98454 -13.79252 -13.62303 -13.15203 -12.69638 -12.24427 -12.18068 -12.01479 -11.89708 -11.88427 -11.44125 -11.00927 -10.93873 -10.88439 -10.67906 -10.30537 -9.97180 -9.35896 -9.30030 -9.01166 -8.72040 -8.41470 -7.83684 -6.14718 -4.21698 2.51784 2.74879 3.24472 3.29927 3.31389 3.34372 3.41803 3.88475 4.16227 4.32455 4.40207 4.45870 4.53386 4.60490 4.77022 5.03688 5.12231 5.15658 5.21234 5.23401 5.35299 5.39553 5.41172 5.47345 5.61653 5.62439 5.68639 6.16313 6.73676 7.21944 7.34926 7.38598 7.48075 7.55621 7.69658 7.99496 8.08297 8.66186 8.81318 9.15315 9.45042 10.95541 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.081866 B = 0.002225 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 341.941445 B =12581.914801 C =12818.528451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.062 3.938 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.250 3.750 10 N -0.715 5.715 11 C 0.495 3.505 12 O -0.538 6.538 13 C 0.041 3.959 14 N -0.657 5.657 15 C 0.043 3.957 16 C 0.510 3.490 17 O -0.516 6.516 18 N -0.734 5.734 19 C 0.151 3.849 20 C -0.171 4.171 21 C -0.178 4.178 22 C -0.171 4.171 23 H 0.265 0.735 24 H 0.026 0.974 25 H 0.027 0.973 26 H 0.389 0.611 27 H 0.098 0.902 28 H 0.056 0.944 29 H 0.361 0.639 30 H 0.103 0.897 31 H 0.059 0.941 32 H 0.400 0.600 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.110 0.890 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.608 -25.941 -1.301 28.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.581 4.581 8 H 0.082 0.918 9 C 0.129 3.871 10 N -0.364 5.364 11 C 0.279 3.721 12 O -0.416 6.416 13 C -0.091 4.091 14 N -0.291 5.291 15 C -0.090 4.090 16 C 0.296 3.704 17 O -0.390 6.390 18 N -0.389 5.389 19 C 0.027 3.973 20 C -0.189 4.189 21 C -0.215 4.215 22 C -0.208 4.208 23 H 0.075 0.925 24 H 0.044 0.956 25 H 0.045 0.955 26 H 0.222 0.778 27 H 0.116 0.884 28 H 0.073 0.927 29 H 0.182 0.818 30 H 0.121 0.879 31 H 0.077 0.923 32 H 0.234 0.766 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.128 0.872 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 10.547 -25.918 -0.628 27.989 hybrid contribution 1.803 0.990 -0.852 2.226 sum 12.350 -24.928 -1.480 27.859 Atomic orbital electron populations 1.69988 1.06108 1.27176 1.48931 1.24967 0.94918 0.99475 0.94757 0.86355 0.79777 0.82987 0.77735 1.19667 1.20831 1.20800 1.21270 0.93283 0.90468 1.53110 0.91848 1.19103 0.88318 0.81896 0.97785 1.46426 1.11045 1.06038 1.72902 1.20281 0.89531 0.84194 0.78106 1.90700 1.16608 1.84597 1.49668 1.21864 0.95724 0.89182 1.02359 1.59793 1.17621 0.98883 1.52836 1.21800 0.94913 0.89412 1.02880 1.20645 0.88721 0.84943 0.76134 1.90769 1.13914 1.87108 1.47190 1.45944 1.10263 1.05467 1.77196 1.20851 0.92906 0.80996 1.02510 1.22468 1.01179 0.91387 1.03877 1.23105 1.03169 1.03414 0.91765 1.22964 1.01297 0.96092 1.00492 0.92497 0.95569 0.95485 0.77817 0.88385 0.92659 0.81772 0.87928 0.92315 0.76617 0.91006 0.91330 0.87154 0.88449 0.88601 0.88402 0.88331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.39 13.29 55.43 0.74 -25.65 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.54 -14.84 9.28 -34.44 -0.32 -15.16 16 8 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 9 C 0.25 6.73 5.43 -5.19 -0.03 6.70 16 10 N -0.71 -15.08 5.55 -61.47 -0.34 -15.42 16 11 C 0.50 10.05 7.87 -10.99 -0.09 9.96 16 12 O -0.54 -13.60 16.20 5.55 0.09 -13.51 16 13 C 0.04 0.57 6.17 -4.97 -0.03 0.54 16 14 N -0.66 -9.70 5.75 -116.34 -0.67 -10.37 16 15 C 0.04 0.42 6.17 -4.98 -0.03 0.39 16 16 C 0.51 5.96 7.87 -10.98 -0.09 5.88 16 17 O -0.52 -8.71 16.20 5.56 0.09 -8.62 16 18 N -0.73 -5.75 5.56 -60.30 -0.33 -6.08 16 19 C 0.15 1.19 5.96 -4.04 -0.02 1.16 16 20 C -0.17 -0.91 5.85 -90.62 -0.53 -1.44 16 21 C -0.18 -0.88 10.18 -26.73 -0.27 -1.15 16 22 C -0.17 -0.85 10.25 -26.73 -0.27 -1.12 16 23 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 24 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.39 6.87 8.32 -40.82 -0.34 6.53 16 27 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.36 5.95 8.13 -39.29 -0.32 5.63 16 30 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.40 1.83 8.40 -40.82 -0.34 1.49 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.61 7.88 -51.93 -0.41 0.20 16 35 H 0.11 0.47 8.04 -51.93 -0.42 0.05 16 36 H 0.10 0.51 8.03 -51.93 -0.42 0.09 16 37 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 339.99 15.07 5.12 5.12 Total: -1.00 -36.38 339.99 -8.11 -44.49 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -6.01 Total: 6.70 kcal Atomic # 6 Polarization: 9.19 SS G_CDS: -1.78 Total: 7.41 kcal Atomic # 7 Polarization: -56.91 SS G_CDS: -0.61 Total: -57.52 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: 0.18 Total: -22.13 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -36.38 -8.11 -44.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393071519.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.008 kcal (2) G-P(sol) polarization free energy of solvation -36.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds