Wall clock time and date at job start Mon Mar 30 2020 05:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86803 * 120.00432 * 2 1 4 4 H 1.48500 * 109.47323 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46722 * 300.00327 * 3 2 1 6 6 H 1.48494 * 109.46814 * 59.99705 * 3 2 1 7 7 C 1.37880 * 119.99979 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00383 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99823 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47196 * 180.02562 * 9 7 2 11 11 C 1.34770 * 120.00157 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00007 * 359.97438 * 11 10 9 13 13 C 1.50701 * 120.00204 * 179.97438 * 11 10 9 14 14 N 1.46903 * 109.47245 * 179.97438 * 13 11 10 15 15 C 1.46893 * 110.99924 * 179.97438 * 14 13 11 16 16 C 1.50706 * 109.47176 * 179.97438 * 15 14 13 17 17 O 1.21279 * 119.99507 * 0.02562 * 16 15 14 18 18 N 1.34774 * 120.00020 * 180.02562 * 16 15 14 19 19 C 1.46496 * 119.99544 * 180.02562 * 18 16 15 20 20 C 1.53005 * 109.47059 * 180.02562 * 19 18 16 21 21 C 1.53004 * 117.49759 * 243.62370 * 20 19 18 22 22 C 1.52996 * 117.50145 * 175.00164 * 20 19 18 23 23 H 0.97001 * 119.99793 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.46785 * 60.00030 * 9 7 2 25 25 H 1.08998 * 109.46887 * 300.00381 * 9 7 2 26 26 H 0.97003 * 119.99785 * 359.97438 * 10 9 7 27 27 H 1.08993 * 109.46849 * 60.00251 * 13 11 10 28 28 H 1.09003 * 109.46941 * 299.99576 * 13 11 10 29 29 H 1.00904 * 110.99923 * 56.04791 * 14 13 11 30 30 H 1.09001 * 109.46739 * 60.00281 * 15 14 13 31 31 H 1.09000 * 109.47767 * 300.00540 * 15 14 13 32 32 H 0.96994 * 119.99756 * 0.02562 * 18 16 15 33 33 H 1.08996 * 109.47366 * 299.99598 * 19 18 16 34 34 H 1.08992 * 109.47635 * 60.00246 * 19 18 16 35 35 H 1.09001 * 115.54850 * 29.32521 * 20 19 18 36 36 H 1.08996 * 117.49992 * 359.97438 * 21 20 19 37 37 H 1.09001 * 117.49660 * 145.01544 * 21 20 19 38 38 H 1.09007 * 117.49716 * 214.97980 * 22 20 19 39 39 H 1.08993 * 117.49910 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2028 -3.6128 -0.0005 11 6 1.7536 -4.8834 -0.0011 12 8 0.5612 -5.1050 -0.0011 13 6 2.7328 -6.0289 -0.0016 14 7 1.9983 -7.3011 -0.0015 15 6 2.9227 -8.4427 -0.0027 16 6 2.1346 -9.7272 -0.0019 17 8 0.9222 -9.6948 -0.0010 18 7 2.7770 -10.9120 -0.0022 19 6 2.0109 -12.1606 -0.0020 20 6 2.9736 -13.3498 -0.0018 21 6 2.9496 -14.2784 -1.2176 22 6 2.3675 -14.7495 0.1166 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8896 26 1 3.1565 -3.4355 -0.0009 27 1 3.3595 -5.9715 0.8883 28 1 3.3594 -5.9708 -0.8917 29 1 1.3615 -7.3510 -0.7827 30 1 3.5513 -8.4020 0.8869 31 1 3.5500 -8.4014 -0.8931 32 1 3.7466 -10.9378 -0.0026 33 1 1.3833 -12.2017 0.8882 34 1 1.3826 -12.2016 -0.8917 35 1 3.9358 -13.1755 0.4798 36 1 2.2476 -14.0425 -2.0173 37 1 3.8961 -14.7152 -1.5360 38 1 2.9311 -15.4963 0.6760 39 1 1.2829 -14.8233 0.1949 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393071519.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:15 Heat of formation + Delta-G solvation = -81.612659 kcal Electronic energy + Delta-G solvation = -19208.172268 eV Core-core repulsion = 15957.077776 eV Total energy + Delta-G solvation = -3251.094492 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.88215 -40.37209 -38.46472 -36.52086 -35.94003 -35.16241 -34.33204 -30.73323 -29.29137 -27.66747 -25.43286 -24.01372 -23.24945 -22.01877 -21.47626 -21.18330 -19.18485 -18.18708 -17.62084 -17.27684 -17.22937 -16.95475 -16.41592 -16.14570 -15.82824 -15.18761 -15.08794 -14.87897 -14.61773 -14.31926 -14.18901 -13.96093 -13.82750 -13.13472 -12.87457 -12.86364 -12.70536 -12.40327 -12.36699 -12.20682 -11.47761 -11.44730 -11.15833 -10.95099 -10.81172 -10.65427 -10.07014 -9.81694 -9.39241 -8.28370 -6.45373 1.43917 1.45551 1.59006 1.64639 1.81476 1.98494 2.34142 2.58379 2.87872 3.06569 3.33671 3.70306 3.82131 3.98675 3.99288 4.10780 4.25976 4.34788 4.39286 4.47355 4.55997 4.66394 4.72564 4.80827 5.03314 5.12413 5.19102 5.24804 5.25644 5.47675 5.50300 5.68819 5.85091 5.87725 6.16125 6.60864 6.66832 6.96637 7.24597 7.30232 7.55942 8.84255 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.081866 B = 0.002225 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 341.941445 B =12581.914801 C =12818.528451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.988 3.012 4 H -0.250 1.250 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.554 4.554 8 H 0.088 0.912 9 C 0.265 3.735 10 N -0.707 5.707 11 C 0.488 3.512 12 O -0.597 6.597 13 C 0.061 3.939 14 N -0.690 5.690 15 C 0.048 3.952 16 C 0.505 3.495 17 O -0.580 6.580 18 N -0.713 5.713 19 C 0.150 3.850 20 C -0.168 4.168 21 C -0.176 4.176 22 C -0.174 4.174 23 H 0.268 0.732 24 H -0.015 1.015 25 H -0.017 1.017 26 H 0.411 0.589 27 H 0.133 0.867 28 H 0.097 0.903 29 H 0.345 0.655 30 H 0.133 0.867 31 H 0.098 0.902 32 H 0.420 0.580 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.130 0.870 36 H 0.090 0.910 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.929 -26.419 -1.290 31.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.200 4.200 3 Si 0.811 3.189 4 H -0.173 1.173 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.592 4.592 8 H 0.106 0.894 9 C 0.142 3.858 10 N -0.358 5.358 11 C 0.275 3.725 12 O -0.478 6.478 13 C -0.071 4.071 14 N -0.324 5.324 15 C -0.084 4.084 16 C 0.292 3.708 17 O -0.459 6.459 18 N -0.367 5.367 19 C 0.026 3.974 20 C -0.186 4.186 21 C -0.213 4.213 22 C -0.211 4.211 23 H 0.077 0.923 24 H 0.003 0.997 25 H 0.001 0.999 26 H 0.247 0.753 27 H 0.150 0.850 28 H 0.115 0.885 29 H 0.164 0.836 30 H 0.151 0.849 31 H 0.116 0.884 32 H 0.257 0.743 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.147 0.853 36 H 0.108 0.892 37 H 0.128 0.872 38 H 0.129 0.871 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 14.997 -26.454 -0.610 30.416 hybrid contribution 0.422 1.019 -0.858 1.397 sum 15.420 -25.435 -1.468 29.781 Atomic orbital electron populations 1.70161 1.08422 1.28486 1.50124 1.26135 0.95789 1.04136 0.93911 0.85063 0.79166 0.77098 0.77570 1.17305 1.20561 1.20591 1.21678 0.94441 0.90430 1.52629 0.89422 1.18524 0.88823 0.84601 0.93857 1.46132 1.11198 1.05347 1.73101 1.21565 0.90021 0.85164 0.75766 1.90676 1.19808 1.85435 1.51878 1.21800 0.93693 0.85812 1.05789 1.59742 1.19289 1.00573 1.52761 1.21935 0.94028 0.86398 1.06014 1.21132 0.88103 0.86475 0.75132 1.90751 1.16690 1.88006 1.50464 1.45781 1.11257 1.04472 1.75213 1.20814 0.93498 0.82106 1.00989 1.22406 1.01230 0.90329 1.04654 1.23158 1.03648 1.03020 0.91464 1.23052 1.01225 0.96089 1.00763 0.92310 0.99717 0.99878 0.75328 0.84975 0.88532 0.83581 0.84886 0.88450 0.74271 0.92723 0.92907 0.85251 0.89199 0.87168 0.87057 0.89002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.33 13.29 21.45 0.28 -57.05 16 2 C 0.00 -0.03 5.46 84.66 0.46 0.44 16 3 Si 0.99 42.45 29.54 68.60 2.03 44.48 16 4 H -0.25 -9.76 7.11 99.48 0.71 -9.06 16 5 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 6 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 7 C -0.55 -30.29 9.28 25.60 0.24 -30.05 16 8 H 0.09 4.26 7.60 -2.91 -0.02 4.24 16 9 C 0.27 14.86 5.43 85.64 0.46 15.32 16 10 N -0.71 -29.69 5.55 -466.78 -2.59 -32.28 16 11 C 0.49 19.76 7.87 87.66 0.69 20.45 16 12 O -0.60 -31.55 16.20 -3.04 -0.05 -31.60 16 13 C 0.06 1.50 6.17 85.56 0.53 2.03 16 14 N -0.69 -19.34 5.75 -521.98 -3.00 -22.34 16 15 C 0.05 0.79 6.17 85.56 0.53 1.31 16 16 C 0.50 11.27 7.87 87.66 0.69 11.96 16 17 O -0.58 -20.28 16.20 -3.02 -0.05 -20.33 16 18 N -0.71 -9.90 5.56 -463.07 -2.57 -12.48 16 19 C 0.15 2.30 5.96 86.38 0.51 2.82 16 20 C -0.17 -1.50 5.85 -10.79 -0.06 -1.57 16 21 C -0.18 -1.46 10.18 30.60 0.31 -1.15 16 22 C -0.17 -1.49 10.25 30.59 0.31 -1.18 16 23 H 0.27 15.33 8.31 -92.71 -0.77 14.55 16 24 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 25 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 26 H 0.41 13.59 8.32 -92.71 -0.77 12.82 16 27 H 0.13 2.45 8.14 -2.39 -0.02 2.43 16 28 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.35 11.48 8.13 -89.69 -0.73 10.76 16 30 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.42 2.45 8.40 -92.71 -0.78 1.67 16 33 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.05 0.98 7.88 -2.39 -0.02 0.96 16 35 H 0.13 0.69 8.04 -2.39 -0.02 0.67 16 36 H 0.09 0.88 8.03 -2.39 -0.02 0.86 16 37 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.11 0.67 8.14 -2.38 -0.02 0.65 16 39 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -86.09 339.99 -2.48 -88.56 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: -1.20 Total: 22.64 kcal Atomic # 6 Polarization: 15.71 SS G_CDS: 4.68 Total: 20.38 kcal Atomic # 7 Polarization: -116.27 SS G_CDS: -7.88 Total: -124.15 kcal Atomic # 8 Polarization: -51.82 SS G_CDS: -0.10 Total: -51.92 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -86.09 -2.48 -88.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393071519.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.952 kcal (2) G-P(sol) polarization free energy of solvation -86.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds