Wall clock time and date at job start Mon Mar 30 2020 05:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46900 * 110.99656 * 2 1 4 4 C 1.46899 * 111.00347 * 123.95050 * 2 1 3 5 5 C 1.53002 * 109.47145 * 296.05231 * 4 2 1 6 6 C 1.52996 * 109.47307 * 176.04512 * 4 2 1 7 7 C 1.50706 * 109.46841 * 56.04390 * 4 2 1 8 8 N 1.29942 * 126.28779 * 359.97438 * 7 4 2 9 9 O 1.21306 * 110.24801 * 179.97438 * 8 7 4 10 10 C 1.33635 * 109.81294 * 0.02562 * 9 8 7 11 11 C 1.50694 * 126.55076 * 179.97438 * 10 9 8 12 12 C 1.53004 * 109.47412 * 270.02588 * 11 10 9 13 13 H 1.08998 * 109.47285 * 305.00031 * 12 11 10 14 14 O 1.42896 * 109.46914 * 65.00139 * 12 11 10 15 15 C 1.50700 * 109.47208 * 184.99886 * 12 11 10 16 16 H 1.08002 * 119.99770 * 0.02562 * 15 12 11 17 17 C 1.37871 * 120.00083 * 180.02562 * 15 12 11 18 18 N 1.31514 * 120.00147 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 120.00278 * 180.02562 * 17 15 12 20 20 H 1.48500 * 109.46986 * 270.00126 * 19 17 15 21 21 H 1.48496 * 109.47029 * 30.00143 * 19 17 15 22 22 H 1.48499 * 109.47352 * 149.99973 * 19 17 15 23 23 N 1.31128 * 106.89789 * 0.22708 * 10 9 8 24 24 H 1.09000 * 109.47178 * 296.04740 * 1 2 3 25 25 H 1.08997 * 109.47513 * 56.04665 * 1 2 3 26 26 H 1.09002 * 109.47051 * 176.05291 * 1 2 3 27 27 H 1.09000 * 109.47079 * 183.95696 * 3 2 1 28 28 H 1.09000 * 109.47252 * 303.95063 * 3 2 1 29 29 H 1.08989 * 109.47616 * 63.95348 * 3 2 1 30 30 H 1.08999 * 109.47177 * 180.02562 * 5 4 2 31 31 H 1.09009 * 109.46985 * 299.99576 * 5 4 2 32 32 H 1.08993 * 109.47719 * 59.99408 * 5 4 2 33 33 H 1.08995 * 109.47192 * 300.00373 * 6 4 2 34 34 H 1.09009 * 109.46857 * 60.00403 * 6 4 2 35 35 H 1.08999 * 109.47305 * 179.97438 * 6 4 2 36 36 H 1.09004 * 109.47461 * 150.02427 * 11 10 9 37 37 H 1.09005 * 109.47220 * 30.02865 * 11 10 9 38 38 H 0.96699 * 114.00348 * 60.00046 * 14 12 11 39 39 H 0.97005 * 119.99661 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.5869 -0.0836 2.4447 6 6 3.5217 -0.8263 1.0492 7 6 1.4346 -2.1643 1.1043 8 7 0.6121 -2.6421 0.2191 9 8 0.3502 -3.7995 0.4709 10 6 1.0002 -4.1812 1.5744 11 6 0.9463 -5.5405 2.2228 12 6 -0.1891 -5.5721 3.2478 13 1 -0.0594 -4.7563 3.9590 14 8 -1.4415 -5.4239 2.5760 15 6 -0.1659 -6.8875 3.9828 16 1 0.5840 -7.6269 3.7430 17 6 -1.1019 -7.1472 4.9612 18 7 -2.0154 -6.2471 5.2528 19 14 -1.0728 -8.7774 5.8727 20 1 -1.9178 -9.7629 5.1516 21 1 0.3227 -9.2800 5.9436 22 1 -1.6002 -8.5854 7.2476 23 7 1.6894 -3.1453 1.9884 24 1 -0.3633 0.4513 0.9233 25 1 -0.3634 0.5739 -0.8524 26 1 -0.3633 -1.0253 -0.0707 27 1 3.0827 1.3433 -0.0709 28 1 1.5898 1.9163 -0.8525 29 1 1.7043 1.8724 0.9232 30 1 1.9780 -0.6516 3.2888 31 1 1.9925 0.9279 2.4688 32 1 0.4996 -0.0406 2.5077 33 1 3.8128 -1.3123 0.1180 34 1 3.9274 0.1852 1.0733 35 1 3.9125 -1.3942 1.8935 36 1 1.8934 -5.7421 2.7233 37 1 0.7693 -6.2997 1.4609 38 1 -1.6240 -6.1168 1.9267 39 1 -2.0303 -5.4003 4.7797 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395475225.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:04 Heat of formation + Delta-G solvation = 24.000503 kcal Electronic energy + Delta-G solvation = -21439.172329 eV Core-core repulsion = 18192.657567 eV Total energy + Delta-G solvation = -3246.514762 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -45.14384 -39.14557 -36.66720 -35.21740 -32.82676 -32.23279 -31.82639 -29.54442 -28.16300 -27.06173 -25.33185 -24.82168 -23.41584 -22.50251 -21.23489 -19.31114 -17.73518 -17.41767 -16.85926 -16.25270 -15.24314 -15.12930 -14.76286 -14.32098 -14.05656 -13.83401 -13.72368 -13.67079 -12.87708 -12.70364 -12.49636 -12.22445 -12.04763 -11.91462 -11.66922 -11.53925 -11.42035 -11.37212 -11.15306 -11.01577 -10.80621 -10.47247 -10.30893 -10.17088 -9.82178 -9.20661 -8.57194 -8.47278 -8.22022 -6.45959 -4.32001 1.60348 2.60698 3.31825 3.38538 3.41164 3.50895 3.56853 3.85869 4.43405 4.52323 4.74383 4.82765 5.04146 5.16107 5.23911 5.32844 5.39875 5.45296 5.47675 5.55603 5.65261 5.67959 5.71620 5.75886 5.81305 5.94428 5.99104 6.11581 6.14003 6.17162 6.40775 6.42384 6.83593 6.90582 7.24640 7.78899 8.22337 8.61169 8.73550 8.94417 9.54516 10.94145 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.037822 B = 0.004186 C = 0.004158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.125487 B = 6686.914018 C = 6732.387098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 N -0.530 5.530 3 C 0.019 3.981 4 C 0.202 3.798 5 C -0.177 4.177 6 C -0.134 4.134 7 C 0.175 3.825 8 N -0.377 5.377 9 O 0.069 5.931 10 C 0.214 3.786 11 C -0.053 4.053 12 C 0.220 3.780 13 H 0.057 0.943 14 O -0.581 6.581 15 C -0.652 4.652 16 H 0.056 0.944 17 C 0.037 3.963 18 N -0.888 5.888 19 Si 1.071 2.929 20 H -0.286 1.286 21 H -0.287 1.287 22 H -0.284 1.284 23 N -0.492 5.492 24 H 0.026 0.974 25 H 0.067 0.933 26 H 0.095 0.905 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.032 0.968 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.108 0.892 37 H 0.093 0.907 38 H 0.358 0.642 39 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.417 10.594 -8.663 16.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 N -0.254 5.254 3 C -0.129 4.129 4 C 0.111 3.889 5 C -0.237 4.237 6 C -0.192 4.192 7 C -0.098 4.098 8 N -0.088 5.088 9 O 0.014 5.986 10 C -0.005 4.005 11 C -0.093 4.093 12 C 0.162 3.838 13 H 0.075 0.925 14 O -0.386 6.386 15 C -0.690 4.690 16 H 0.074 0.926 17 C -0.173 4.173 18 N -0.522 5.522 19 Si 0.899 3.101 20 H -0.213 1.213 21 H -0.213 1.213 22 H -0.209 1.209 23 N -0.226 5.226 24 H 0.044 0.956 25 H 0.086 0.914 26 H 0.113 0.887 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.050 0.950 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.127 0.873 37 H 0.111 0.889 38 H 0.204 0.796 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.740 10.733 -7.955 15.440 hybrid contribution 0.512 0.664 -0.787 1.150 sum 8.252 11.397 -8.742 16.565 Atomic orbital electron populations 1.22802 0.86708 1.04710 1.00100 1.62117 1.08805 1.13613 1.40876 1.22507 1.01076 0.88448 1.00843 1.19127 0.95244 0.84328 0.90208 1.22433 1.02347 1.01118 0.97786 1.21857 0.91523 1.02568 1.03283 1.25286 0.96568 0.98453 0.89533 1.74532 1.18015 0.92956 1.23275 1.85298 1.54032 1.20899 1.38421 1.29247 0.87311 0.99227 0.84683 1.21364 1.05121 0.83620 0.99193 1.19606 0.78217 0.98322 0.87672 0.92502 1.86521 1.40815 1.53229 1.58020 1.22346 1.19709 1.02193 1.24733 0.92556 1.25831 0.92286 1.03966 0.95193 1.70616 1.32277 1.08088 1.41180 0.83527 0.75759 0.74271 0.76519 1.21280 1.21339 1.20913 1.71799 1.25177 0.99148 1.26490 0.95556 0.91378 0.88688 0.90895 0.91135 0.95002 0.90423 0.91170 0.92119 0.91693 0.91377 0.90832 0.87343 0.88855 0.79606 0.90366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.06 8.85 60.07 0.53 0.59 16 2 N -0.53 -6.98 4.76 -236.76 -1.13 -8.11 16 3 C 0.02 0.19 8.82 60.06 0.53 0.71 16 4 C 0.20 2.85 0.68 -132.75 -0.09 2.76 16 5 C -0.18 -2.31 7.77 37.16 0.29 -2.02 16 6 C -0.13 -1.60 8.22 37.16 0.31 -1.30 16 7 C 0.18 3.09 6.06 -156.37 -0.95 2.15 16 8 N -0.38 -7.03 9.05 30.90 0.28 -6.75 16 9 O 0.07 1.32 11.31 18.12 0.20 1.52 16 10 C 0.21 4.10 7.54 -13.06 -0.10 4.01 16 11 C -0.05 -1.01 5.46 -27.88 -0.15 -1.16 16 12 C 0.22 5.22 2.42 -27.88 -0.07 5.15 16 13 H 0.06 1.52 8.01 -51.93 -0.42 1.10 16 14 O -0.58 -13.93 11.77 -35.23 -0.41 -14.34 16 15 C -0.65 -16.96 8.76 -34.44 -0.30 -17.26 16 16 H 0.06 1.41 7.74 -52.49 -0.41 1.00 16 17 C 0.04 1.01 5.40 -17.82 -0.10 0.91 16 18 N -0.89 -26.33 13.53 55.43 0.75 -25.58 16 19 Si 1.07 23.92 29.90 -169.99 -5.08 18.84 16 20 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 21 H -0.29 -6.07 7.11 56.52 0.40 -5.66 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 N -0.49 -9.39 11.55 -9.87 -0.11 -9.50 16 24 H 0.03 0.34 6.40 -51.93 -0.33 0.01 16 25 H 0.07 0.79 8.12 -51.93 -0.42 0.37 16 26 H 0.09 1.54 5.01 -51.93 -0.26 1.28 16 27 H 0.07 0.62 6.30 -51.93 -0.33 0.29 16 28 H 0.07 0.61 8.12 -51.93 -0.42 0.18 16 29 H 0.03 0.29 6.30 -51.93 -0.33 -0.04 16 30 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.07 0.73 6.40 -51.92 -0.33 0.40 16 32 H 0.06 0.86 6.49 -51.93 -0.34 0.52 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.64 6.40 -51.92 -0.33 0.30 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.11 1.96 8.14 -51.93 -0.42 1.54 16 37 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 38 H 0.36 7.47 9.04 45.56 0.41 7.88 16 39 H 0.28 8.64 6.47 -40.82 -0.26 8.38 16 LS Contribution 314.67 15.07 4.74 4.74 Total: -1.00 -30.64 314.67 -5.54 -36.18 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -4.68 Total: 8.46 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: -0.10 Total: -5.46 kcal Atomic # 7 Polarization: -49.73 SS G_CDS: -0.21 Total: -49.95 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: -0.21 Total: -12.82 kcal Atomic # 14 Polarization: 23.92 SS G_CDS: -5.08 Total: 18.84 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.64 -5.54 -36.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395475225.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.178 kcal (2) G-P(sol) polarization free energy of solvation -30.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds