Wall clock time and date at job start Mon Mar 30 2020 05:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46900 * 110.99656 * 2 1 4 4 C 1.46899 * 111.00347 * 123.95050 * 2 1 3 5 5 C 1.53002 * 109.47145 * 296.05231 * 4 2 1 6 6 C 1.52996 * 109.47307 * 176.04512 * 4 2 1 7 7 C 1.50706 * 109.46841 * 56.04390 * 4 2 1 8 8 N 1.29942 * 126.28779 * 359.97438 * 7 4 2 9 9 O 1.21306 * 110.24801 * 179.97438 * 8 7 4 10 10 C 1.33635 * 109.81294 * 0.02562 * 9 8 7 11 11 C 1.50694 * 126.55076 * 179.97438 * 10 9 8 12 12 C 1.53004 * 109.47412 * 270.02588 * 11 10 9 13 13 H 1.08998 * 109.47285 * 305.00031 * 12 11 10 14 14 O 1.42896 * 109.46914 * 65.00139 * 12 11 10 15 15 C 1.50700 * 109.47208 * 184.99886 * 12 11 10 16 16 H 1.08002 * 119.99770 * 0.02562 * 15 12 11 17 17 C 1.37871 * 120.00083 * 180.02562 * 15 12 11 18 18 N 1.31514 * 120.00147 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 120.00278 * 180.02562 * 17 15 12 20 20 H 1.48500 * 109.46986 * 270.00126 * 19 17 15 21 21 H 1.48496 * 109.47029 * 30.00143 * 19 17 15 22 22 H 1.48499 * 109.47352 * 149.99973 * 19 17 15 23 23 N 1.31128 * 106.89789 * 0.22708 * 10 9 8 24 24 H 1.09000 * 109.47178 * 296.04740 * 1 2 3 25 25 H 1.08997 * 109.47513 * 56.04665 * 1 2 3 26 26 H 1.09002 * 109.47051 * 176.05291 * 1 2 3 27 27 H 1.09000 * 109.47079 * 183.95696 * 3 2 1 28 28 H 1.09000 * 109.47252 * 303.95063 * 3 2 1 29 29 H 1.08989 * 109.47616 * 63.95348 * 3 2 1 30 30 H 1.08999 * 109.47177 * 180.02562 * 5 4 2 31 31 H 1.09009 * 109.46985 * 299.99576 * 5 4 2 32 32 H 1.08993 * 109.47719 * 59.99408 * 5 4 2 33 33 H 1.08995 * 109.47192 * 300.00373 * 6 4 2 34 34 H 1.09009 * 109.46857 * 60.00403 * 6 4 2 35 35 H 1.08999 * 109.47305 * 179.97438 * 6 4 2 36 36 H 1.09004 * 109.47461 * 150.02427 * 11 10 9 37 37 H 1.09005 * 109.47220 * 30.02865 * 11 10 9 38 38 H 0.96699 * 114.00348 * 60.00046 * 14 12 11 39 39 H 0.97005 * 119.99661 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.5869 -0.0836 2.4447 6 6 3.5217 -0.8263 1.0492 7 6 1.4346 -2.1643 1.1043 8 7 0.6121 -2.6421 0.2191 9 8 0.3502 -3.7995 0.4709 10 6 1.0002 -4.1812 1.5744 11 6 0.9463 -5.5405 2.2228 12 6 -0.1891 -5.5721 3.2478 13 1 -0.0594 -4.7563 3.9590 14 8 -1.4415 -5.4239 2.5760 15 6 -0.1659 -6.8875 3.9828 16 1 0.5840 -7.6269 3.7430 17 6 -1.1019 -7.1472 4.9612 18 7 -2.0154 -6.2471 5.2528 19 14 -1.0728 -8.7774 5.8727 20 1 -1.9178 -9.7629 5.1516 21 1 0.3227 -9.2800 5.9436 22 1 -1.6002 -8.5854 7.2476 23 7 1.6894 -3.1453 1.9884 24 1 -0.3633 0.4513 0.9233 25 1 -0.3634 0.5739 -0.8524 26 1 -0.3633 -1.0253 -0.0707 27 1 3.0827 1.3433 -0.0709 28 1 1.5898 1.9163 -0.8525 29 1 1.7043 1.8724 0.9232 30 1 1.9780 -0.6516 3.2888 31 1 1.9925 0.9279 2.4688 32 1 0.4996 -0.0406 2.5077 33 1 3.8128 -1.3123 0.1180 34 1 3.9274 0.1852 1.0733 35 1 3.9125 -1.3942 1.8935 36 1 1.8934 -5.7421 2.7233 37 1 0.7693 -6.2997 1.4609 38 1 -1.6240 -6.1168 1.9267 39 1 -2.0303 -5.4003 4.7797 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395475225.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:03 Heat of formation + Delta-G solvation = -0.871900 kcal Electronic energy + Delta-G solvation = -21440.250877 eV Core-core repulsion = 18192.657567 eV Total energy + Delta-G solvation = -3247.593310 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -46.59220 -40.19295 -38.53434 -36.64567 -34.38911 -34.20136 -32.93529 -31.18166 -29.14537 -28.06714 -27.20630 -25.97631 -24.66346 -24.18571 -22.87532 -20.52724 -19.51455 -19.05114 -18.27919 -17.44240 -16.98617 -16.20576 -16.03691 -15.79227 -15.64796 -15.41544 -15.05920 -14.72243 -14.59381 -14.07424 -13.79271 -13.49182 -13.20466 -13.10487 -12.91851 -12.78501 -12.62880 -12.53968 -12.52060 -12.36581 -12.26649 -12.15855 -11.88877 -11.85074 -11.52941 -10.83100 -10.63978 -10.14504 -9.44312 -8.61727 -6.48070 0.12327 1.18042 1.59161 1.66997 1.83817 1.84479 2.35487 2.60045 2.70618 3.16376 3.21132 3.63012 3.79091 3.90676 4.08827 4.17780 4.20993 4.22842 4.26484 4.43440 4.52719 4.55459 4.59658 4.64617 4.73815 4.76992 4.86553 4.87158 4.91621 5.07068 5.08649 5.17614 5.32669 5.77383 5.81928 5.97788 6.13861 6.53261 7.13191 7.15704 7.49074 8.76187 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.037822 B = 0.004186 C = 0.004158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.125487 B = 6686.914018 C = 6732.387098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 N -0.541 5.541 3 C 0.017 3.983 4 C 0.196 3.804 5 C -0.172 4.172 6 C -0.128 4.128 7 C 0.175 3.825 8 N -0.387 5.387 9 O 0.059 5.941 10 C 0.207 3.793 11 C -0.039 4.039 12 C 0.222 3.778 13 H 0.018 0.982 14 O -0.595 6.595 15 C -0.653 4.653 16 H 0.069 0.931 17 C -0.017 4.017 18 N -0.923 5.923 19 Si 1.120 2.880 20 H -0.272 1.272 21 H -0.264 1.264 22 H -0.291 1.291 23 N -0.505 5.505 24 H 0.026 0.974 25 H 0.086 0.914 26 H 0.065 0.935 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.041 0.959 30 H 0.064 0.936 31 H 0.101 0.899 32 H 0.043 0.957 33 H 0.057 0.943 34 H 0.099 0.901 35 H 0.066 0.934 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.372 0.628 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.981 10.834 -9.348 17.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 N -0.265 5.265 3 C -0.130 4.130 4 C 0.105 3.895 5 C -0.231 4.231 6 C -0.186 4.186 7 C -0.099 4.099 8 N -0.099 5.099 9 O 0.006 5.994 10 C -0.013 4.013 11 C -0.078 4.078 12 C 0.164 3.836 13 H 0.036 0.964 14 O -0.402 6.402 15 C -0.691 4.691 16 H 0.088 0.912 17 C -0.219 4.219 18 N -0.559 5.559 19 Si 0.941 3.059 20 H -0.198 1.198 21 H -0.189 1.189 22 H -0.217 1.217 23 N -0.239 5.239 24 H 0.044 0.956 25 H 0.104 0.896 26 H 0.083 0.917 27 H 0.107 0.893 28 H 0.101 0.899 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.120 0.880 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.118 0.882 35 H 0.085 0.915 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.219 0.781 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.320 10.963 -8.674 16.801 hybrid contribution 0.037 0.684 -0.635 0.934 sum 9.357 11.647 -9.308 17.603 Atomic orbital electron populations 1.22717 0.87426 1.03027 1.00922 1.62138 1.08328 1.15662 1.40353 1.22638 1.02003 0.86451 1.01898 1.19412 0.96448 0.82596 0.91092 1.22400 1.01289 1.02615 0.96797 1.21840 0.89772 1.04398 1.02602 1.26056 0.95651 0.99695 0.88504 1.74584 1.18558 0.92718 1.23996 1.85281 1.54242 1.21344 1.38508 1.29239 0.87621 0.99350 0.85042 1.21116 1.03498 0.84458 0.98697 1.19365 0.79755 0.96041 0.88480 0.96449 1.86469 1.41259 1.53936 1.58506 1.22758 1.19183 1.02959 1.24158 0.91241 1.27330 0.91845 1.06401 0.96284 1.70765 1.34443 1.08219 1.42428 0.82912 0.77168 0.70790 0.74994 1.19785 1.18876 1.21678 1.71804 1.25589 0.99598 1.26916 0.95563 0.89572 0.91693 0.89322 0.89874 0.94094 0.91645 0.88012 0.93815 0.92381 0.88202 0.91466 0.86271 0.86211 0.78100 0.92413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 8.85 127.69 1.13 1.32 16 2 N -0.54 -13.26 4.76 -902.97 -4.30 -17.56 16 3 C 0.02 0.27 8.82 127.69 1.13 1.40 16 4 C 0.20 5.27 0.68 2.78 0.00 5.27 16 5 C -0.17 -4.26 7.77 71.98 0.56 -3.71 16 6 C -0.13 -2.79 8.22 71.98 0.59 -2.20 16 7 C 0.17 6.15 6.06 138.47 0.84 6.98 16 8 N -0.39 -14.51 9.05 -60.32 -0.55 -15.05 16 9 O 0.06 2.28 11.31 74.90 0.85 3.13 16 10 C 0.21 7.93 7.54 88.38 0.67 8.60 16 11 C -0.04 -1.43 5.46 29.85 0.16 -1.27 16 12 C 0.22 10.67 2.42 29.85 0.07 10.74 16 13 H 0.02 0.98 8.01 -2.39 -0.02 0.96 16 14 O -0.60 -29.08 11.77 -148.98 -1.75 -30.83 16 15 C -0.65 -33.66 8.76 25.60 0.22 -33.44 16 16 H 0.07 3.34 7.74 -2.91 -0.02 3.32 16 17 C -0.02 -0.91 5.40 84.65 0.46 -0.45 16 18 N -0.92 -55.96 13.53 21.45 0.29 -55.67 16 19 Si 1.12 47.39 29.90 68.60 2.05 49.44 16 20 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 21 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 22 H -0.29 -12.57 7.11 99.48 0.71 -11.87 16 23 N -0.50 -19.33 11.55 -303.22 -3.50 -22.84 16 24 H 0.03 0.67 6.40 -2.39 -0.02 0.66 16 25 H 0.09 1.89 8.12 -2.39 -0.02 1.87 16 26 H 0.06 2.13 5.01 -2.39 -0.01 2.11 16 27 H 0.09 1.16 6.30 -2.39 -0.02 1.14 16 28 H 0.08 1.16 8.12 -2.39 -0.02 1.14 16 29 H 0.04 0.60 6.30 -2.39 -0.02 0.58 16 30 H 0.06 1.77 8.14 -2.39 -0.02 1.76 16 31 H 0.10 1.84 6.40 -2.38 -0.02 1.83 16 32 H 0.04 1.22 6.49 -2.39 -0.02 1.20 16 33 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.10 1.51 6.40 -2.38 -0.02 1.50 16 35 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.12 4.16 8.14 -2.38 -0.02 4.14 16 37 H 0.12 3.79 8.14 -2.38 -0.02 3.77 16 38 H 0.37 15.55 9.04 -74.06 -0.67 14.88 16 39 H 0.27 16.77 6.47 -92.70 -0.60 16.17 16 Total: -1.00 -67.13 314.67 -0.51 -67.64 By element: Atomic # 1 Polarization: 27.90 SS G_CDS: 0.57 Total: 28.47 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: 5.83 Total: -6.74 kcal Atomic # 7 Polarization: -103.06 SS G_CDS: -8.05 Total: -111.11 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.91 Total: -27.70 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.05 Total: 49.44 kcal Total: -67.13 -0.51 -67.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395475225.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.763 kcal (2) G-P(sol) polarization free energy of solvation -67.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds