Wall clock time and date at job start Mon Mar 30 2020 05:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99607 * 2 1 4 4 H 1.48507 * 109.46753 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46982 * 299.99496 * 3 2 1 6 6 H 1.48492 * 109.47245 * 60.00046 * 3 2 1 7 7 C 1.37874 * 119.99958 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99995 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00328 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47234 * 180.02562 * 9 7 2 11 11 C 1.34779 * 119.99901 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99784 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.99710 * 179.97438 * 11 10 9 14 14 N 1.46894 * 109.47023 * 180.02562 * 13 11 10 15 15 C 1.46899 * 111.00388 * 180.02562 * 14 13 11 16 16 H 1.09001 * 108.44533 * 37.12911 * 15 14 13 17 17 C 1.51777 * 108.62044 * 154.99843 * 15 14 13 18 18 C 1.52987 * 110.84670 * 188.10073 * 17 15 14 19 19 N 1.47199 * 108.66082 * 273.55632 * 18 17 15 20 20 C 1.33369 * 120.42657 * 71.95895 * 19 18 17 21 21 O 1.21285 * 119.89024 * 179.69591 * 20 19 18 22 22 C 1.51422 * 120.21956 * 359.71495 * 20 19 18 23 23 C 1.51708 * 108.54534 * 279.28074 * 15 14 13 24 24 H 0.96999 * 120.00263 * 0.02562 * 1 2 3 25 25 H 1.08993 * 109.47007 * 59.99766 * 9 7 2 26 26 H 1.09010 * 109.46838 * 299.99821 * 9 7 2 27 27 H 0.97004 * 119.99990 * 0.02562 * 10 9 7 28 28 H 1.09003 * 109.47275 * 60.00126 * 13 11 10 29 29 H 1.09000 * 109.47265 * 300.00458 * 13 11 10 30 30 H 1.00901 * 111.00217 * 303.95412 * 14 13 11 31 31 H 1.09002 * 109.19589 * 67.76091 * 17 15 14 32 32 H 1.08998 * 109.19473 * 308.43502 * 17 15 14 33 33 H 1.09002 * 109.60393 * 33.30624 * 18 17 15 34 34 H 1.08998 * 109.60661 * 153.79920 * 18 17 15 35 35 H 0.97004 * 119.78451 * 251.97602 * 19 18 17 36 36 H 1.08993 * 109.63441 * 48.47180 * 22 20 19 37 37 H 1.09003 * 109.63387 * 168.87087 * 22 20 19 38 38 H 1.08996 * 109.24215 * 51.72564 * 23 15 14 39 39 H 1.09003 * 109.19698 * 292.34000 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0018 11 6 1.7539 -4.8834 0.0025 12 8 0.5615 -5.1049 0.0026 13 6 2.7332 -6.0287 0.0032 14 7 1.9988 -7.3009 0.0033 15 6 2.9233 -8.4426 0.0046 16 1 3.7805 -8.1915 0.6292 17 6 2.2147 -9.6392 0.6126 18 6 3.1892 -10.7995 0.8236 19 7 3.2628 -11.5847 -0.4194 20 6 3.8872 -11.0953 -1.4915 21 8 3.9468 -11.7528 -2.5088 22 6 4.5223 -9.7216 -1.4426 23 6 3.4082 -8.6723 -1.4144 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8904 27 1 3.1568 -3.4354 0.0028 28 1 3.3599 -5.9705 0.8932 29 1 3.3600 -5.9715 -0.8868 30 1 1.3621 -7.3508 0.7845 31 1 1.4151 -9.9596 -0.0553 32 1 1.7862 -9.3521 1.5728 33 1 4.1767 -10.4080 1.0678 34 1 2.8332 -11.4331 1.6359 35 1 2.8543 -12.4636 -0.4590 36 1 5.1326 -9.6320 -0.5440 37 1 5.1456 -9.5746 -2.3247 38 1 3.7879 -7.7348 -1.8205 39 1 2.5749 -9.0172 -2.0266 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396745536.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:12 Heat of formation + Delta-G solvation = -82.903442 kcal Electronic energy + Delta-G solvation = -20201.979443 eV Core-core repulsion = 16950.828978 eV Total energy + Delta-G solvation = -3251.150465 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.52571 -38.95963 -37.57168 -35.32462 -34.17158 -32.71323 -32.32785 -31.11778 -28.10587 -26.52189 -25.09323 -23.95668 -22.26178 -20.85464 -19.92332 -19.68239 -17.69393 -17.21381 -17.12139 -16.04522 -15.66700 -15.53169 -14.98606 -14.60483 -14.50044 -14.25044 -14.21591 -13.80961 -13.46596 -12.88442 -12.78336 -12.66344 -12.33576 -11.99282 -11.85663 -11.66767 -11.56863 -11.22538 -10.97497 -10.92251 -10.85065 -10.33837 -10.01711 -9.48586 -9.40021 -9.07343 -8.75933 -8.47717 -7.89372 -6.18615 -4.25666 2.40965 2.98916 3.21907 3.28949 3.31819 3.35031 3.63924 4.16703 4.23322 4.32951 4.38064 4.52683 4.76766 4.88222 4.92651 5.05654 5.14518 5.16324 5.17589 5.32978 5.38500 5.48246 5.55895 5.58659 5.72469 5.86123 6.03291 6.48135 6.83139 6.93385 7.27921 7.32175 7.42294 7.50135 7.65208 7.95226 7.96575 8.60937 8.76654 9.09039 9.41238 10.91625 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.046347 B = 0.002859 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.989935 B = 9791.601274 C =10052.104618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.250 3.750 10 N -0.714 5.714 11 C 0.496 3.504 12 O -0.544 6.544 13 C 0.039 3.961 14 N -0.670 5.670 15 C 0.089 3.911 16 H 0.043 0.957 17 C -0.146 4.146 18 C 0.112 3.888 19 N -0.725 5.725 20 C 0.519 3.481 21 O -0.554 6.554 22 C -0.138 4.138 23 C -0.105 4.105 24 H 0.265 0.735 25 H 0.027 0.973 26 H 0.026 0.974 27 H 0.390 0.610 28 H 0.054 0.946 29 H 0.096 0.904 30 H 0.353 0.647 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.400 0.600 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.161 -19.869 3.944 22.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.129 3.871 10 N -0.363 5.363 11 C 0.279 3.721 12 O -0.422 6.422 13 C -0.093 4.093 14 N -0.304 5.304 15 C -0.021 4.021 16 H 0.061 0.939 17 C -0.184 4.184 18 C -0.013 4.013 19 N -0.378 5.378 20 C 0.306 3.694 21 O -0.432 6.432 22 C -0.179 4.179 23 C -0.143 4.143 24 H 0.075 0.925 25 H 0.045 0.955 26 H 0.044 0.956 27 H 0.222 0.778 28 H 0.072 0.928 29 H 0.114 0.886 30 H 0.173 0.827 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.109 0.891 35 H 0.235 0.765 36 H 0.106 0.894 37 H 0.118 0.882 38 H 0.098 0.902 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.148 -20.001 2.749 22.165 hybrid contribution 0.978 0.869 1.006 1.650 sum 10.126 -19.132 3.755 21.969 Atomic orbital electron populations 1.69986 1.06112 1.27214 1.48948 1.24962 0.94918 0.99485 0.94705 0.86361 0.79812 0.82963 0.77769 1.19634 1.20775 1.20805 1.21263 0.93283 0.90461 1.53131 0.91862 1.19095 0.88297 0.81943 0.97717 1.46452 1.11084 1.06132 1.72673 1.20349 0.89540 0.84245 0.77920 1.90669 1.16680 1.84699 1.50116 1.21914 0.95730 0.89450 1.02243 1.60119 1.18758 0.99719 1.51782 1.21178 0.94231 0.90718 0.95971 0.93932 1.22019 0.99286 0.94889 1.02247 1.21734 1.00207 0.93316 0.86053 1.45978 1.57472 1.21283 1.13037 1.20643 0.77736 0.88436 0.82568 1.90759 1.60285 1.61041 1.31160 1.21994 0.99130 0.91771 1.05020 1.21238 0.97519 0.98471 0.97072 0.92482 0.95517 0.95619 0.77793 0.92763 0.88557 0.82679 0.89889 0.90159 0.90404 0.89143 0.76452 0.89369 0.88221 0.90170 0.90612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.95 13.29 55.43 0.74 -25.21 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 20.64 29.54 -169.99 -5.02 15.61 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 7 C -0.54 -14.56 9.28 -34.44 -0.32 -14.88 16 8 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 9 C 0.25 6.55 5.43 -5.19 -0.03 6.52 16 10 N -0.71 -14.51 5.55 -61.47 -0.34 -14.85 16 11 C 0.50 9.43 7.87 -10.98 -0.09 9.35 16 12 O -0.54 -12.76 16.20 5.56 0.09 -12.67 16 13 C 0.04 0.50 5.93 -4.98 -0.03 0.47 16 14 N -0.67 -8.10 5.89 -109.36 -0.64 -8.75 16 15 C 0.09 0.75 2.04 -68.99 -0.14 0.61 16 16 H 0.04 0.30 7.51 -51.93 -0.39 -0.09 16 17 C -0.15 -0.96 5.06 -27.36 -0.14 -1.10 16 18 C 0.11 0.52 6.47 -3.67 -0.02 0.50 16 19 N -0.73 -5.13 5.27 -59.90 -0.32 -5.45 16 20 C 0.52 5.30 7.06 -11.26 -0.08 5.22 16 21 O -0.55 -8.19 17.92 5.55 0.10 -8.09 16 22 C -0.14 -1.10 5.57 -27.50 -0.15 -1.25 16 23 C -0.10 -0.95 5.14 -27.35 -0.14 -1.09 16 24 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 25 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.03 0.74 8.14 -51.92 -0.42 0.32 16 27 H 0.39 6.68 8.32 -40.82 -0.34 6.34 16 28 H 0.05 0.57 8.03 -51.93 -0.42 0.16 16 29 H 0.10 1.10 6.95 -51.93 -0.36 0.74 16 30 H 0.35 4.40 7.84 -39.29 -0.31 4.09 16 31 H 0.08 0.69 8.05 -51.93 -0.42 0.27 16 32 H 0.08 0.46 7.87 -51.93 -0.41 0.05 16 33 H 0.08 0.30 6.71 -51.93 -0.35 -0.05 16 34 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.40 2.49 8.91 -40.82 -0.36 2.13 16 36 H 0.09 0.50 6.77 -51.93 -0.35 0.15 16 37 H 0.10 0.80 8.13 -51.93 -0.42 0.38 16 38 H 0.08 0.74 6.88 -51.93 -0.36 0.38 16 39 H 0.08 0.85 7.86 -51.93 -0.41 0.44 16 LS Contribution 320.45 15.07 4.83 4.83 Total: -1.00 -35.10 320.45 -7.50 -42.60 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -5.70 Total: 5.99 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: -1.24 Total: 5.98 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: -0.56 Total: -54.26 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: 0.19 Total: -20.76 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -35.10 -7.50 -42.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396745536.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.307 kcal (2) G-P(sol) polarization free energy of solvation -35.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds