Wall clock time and date at job start Mon Mar 30 2020 05:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99607 * 2 1 4 4 H 1.48507 * 109.46753 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46982 * 299.99496 * 3 2 1 6 6 H 1.48492 * 109.47245 * 60.00046 * 3 2 1 7 7 C 1.37874 * 119.99958 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99995 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00328 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47234 * 180.02562 * 9 7 2 11 11 C 1.34779 * 119.99901 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99784 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.99710 * 179.97438 * 11 10 9 14 14 N 1.46894 * 109.47023 * 180.02562 * 13 11 10 15 15 C 1.46899 * 111.00388 * 180.02562 * 14 13 11 16 16 H 1.09001 * 108.44533 * 37.12911 * 15 14 13 17 17 C 1.51777 * 108.62044 * 154.99843 * 15 14 13 18 18 C 1.52987 * 110.84670 * 188.10073 * 17 15 14 19 19 N 1.47199 * 108.66082 * 273.55632 * 18 17 15 20 20 C 1.33369 * 120.42657 * 71.95895 * 19 18 17 21 21 O 1.21285 * 119.89024 * 179.69591 * 20 19 18 22 22 C 1.51422 * 120.21956 * 359.71495 * 20 19 18 23 23 C 1.51708 * 108.54534 * 279.28074 * 15 14 13 24 24 H 0.96999 * 120.00263 * 0.02562 * 1 2 3 25 25 H 1.08993 * 109.47007 * 59.99766 * 9 7 2 26 26 H 1.09010 * 109.46838 * 299.99821 * 9 7 2 27 27 H 0.97004 * 119.99990 * 0.02562 * 10 9 7 28 28 H 1.09003 * 109.47275 * 60.00126 * 13 11 10 29 29 H 1.09000 * 109.47265 * 300.00458 * 13 11 10 30 30 H 1.00901 * 111.00217 * 303.95412 * 14 13 11 31 31 H 1.09002 * 109.19589 * 67.76091 * 17 15 14 32 32 H 1.08998 * 109.19473 * 308.43502 * 17 15 14 33 33 H 1.09002 * 109.60393 * 33.30624 * 18 17 15 34 34 H 1.08998 * 109.60661 * 153.79920 * 18 17 15 35 35 H 0.97004 * 119.78451 * 251.97602 * 19 18 17 36 36 H 1.08993 * 109.63441 * 48.47180 * 22 20 19 37 37 H 1.09003 * 109.63387 * 168.87087 * 22 20 19 38 38 H 1.08996 * 109.24215 * 51.72564 * 23 15 14 39 39 H 1.09003 * 109.19698 * 292.34000 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0018 11 6 1.7539 -4.8834 0.0025 12 8 0.5615 -5.1049 0.0026 13 6 2.7332 -6.0287 0.0032 14 7 1.9988 -7.3009 0.0033 15 6 2.9233 -8.4426 0.0046 16 1 3.7805 -8.1915 0.6292 17 6 2.2147 -9.6392 0.6126 18 6 3.1892 -10.7995 0.8236 19 7 3.2628 -11.5847 -0.4194 20 6 3.8872 -11.0953 -1.4915 21 8 3.9468 -11.7528 -2.5088 22 6 4.5223 -9.7216 -1.4426 23 6 3.4082 -8.6723 -1.4144 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8904 27 1 3.1568 -3.4354 0.0028 28 1 3.3599 -5.9705 0.8932 29 1 3.3600 -5.9715 -0.8868 30 1 1.3621 -7.3508 0.7845 31 1 1.4151 -9.9596 -0.0553 32 1 1.7862 -9.3521 1.5728 33 1 4.1767 -10.4080 1.0678 34 1 2.8332 -11.4331 1.6359 35 1 2.8543 -12.4636 -0.4590 36 1 5.1326 -9.6320 -0.5440 37 1 5.1456 -9.5746 -2.3247 38 1 3.7879 -7.7348 -1.8205 39 1 2.5749 -9.0172 -2.0266 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396745536.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:11 Heat of formation + Delta-G solvation = -113.497649 kcal Electronic energy + Delta-G solvation = -20203.306107 eV Core-core repulsion = 16950.828978 eV Total energy + Delta-G solvation = -3252.477129 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.25432 -40.44761 -38.48570 -36.25498 -35.92016 -34.32727 -33.48000 -31.86045 -29.73959 -27.71991 -25.99392 -24.93329 -23.92933 -21.53523 -21.27943 -20.56115 -19.01097 -18.26558 -17.85650 -17.52452 -17.10719 -16.81861 -16.27686 -16.02094 -15.45396 -15.38821 -14.98574 -14.78434 -14.43790 -14.29046 -14.03460 -13.85417 -13.41084 -13.39016 -12.93530 -12.88760 -12.73068 -12.53621 -12.32598 -12.21154 -11.92716 -11.47618 -11.44275 -10.83160 -10.80809 -10.68849 -10.12693 -9.80065 -9.33011 -8.28598 -6.45080 1.44072 1.45126 1.58525 1.65035 1.82983 2.30658 2.42356 2.51652 3.06562 3.22105 3.54901 3.83230 3.86861 4.02143 4.23553 4.26659 4.40598 4.44715 4.49554 4.53253 4.60478 4.71923 4.81464 5.04001 5.07952 5.12849 5.25724 5.28565 5.30898 5.50849 5.71136 5.86464 5.91221 6.04971 6.29301 6.40501 6.67152 6.97677 7.24928 7.26464 7.55932 8.83853 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.046347 B = 0.002859 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.989935 B = 9791.601274 C =10052.104618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.985 3.015 4 H -0.251 1.251 5 H -0.281 1.281 6 H -0.279 1.279 7 C -0.554 4.554 8 H 0.085 0.915 9 C 0.267 3.733 10 N -0.709 5.709 11 C 0.490 3.510 12 O -0.595 6.595 13 C 0.057 3.943 14 N -0.694 5.694 15 C 0.091 3.909 16 H 0.073 0.927 17 C -0.143 4.143 18 C 0.113 3.887 19 N -0.716 5.716 20 C 0.511 3.489 21 O -0.612 6.612 22 C -0.129 4.129 23 C -0.101 4.101 24 H 0.268 0.732 25 H -0.017 1.017 26 H -0.013 1.013 27 H 0.409 0.591 28 H 0.092 0.908 29 H 0.118 0.882 30 H 0.349 0.651 31 H 0.059 0.941 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.119 0.881 35 H 0.403 0.597 36 H 0.122 0.878 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.226 -19.931 5.463 24.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.808 3.192 4 H -0.174 1.174 5 H -0.207 1.207 6 H -0.205 1.205 7 C -0.591 4.591 8 H 0.103 0.897 9 C 0.143 3.857 10 N -0.360 5.360 11 C 0.277 3.723 12 O -0.476 6.476 13 C -0.075 4.075 14 N -0.327 5.327 15 C -0.018 4.018 16 H 0.091 0.909 17 C -0.182 4.182 18 C -0.010 4.010 19 N -0.366 5.366 20 C 0.299 3.701 21 O -0.495 6.495 22 C -0.169 4.169 23 C -0.140 4.140 24 H 0.077 0.923 25 H 0.001 0.999 26 H 0.005 0.995 27 H 0.245 0.755 28 H 0.110 0.890 29 H 0.136 0.864 30 H 0.169 0.831 31 H 0.078 0.922 32 H 0.112 0.888 33 H 0.117 0.883 34 H 0.137 0.863 35 H 0.239 0.761 36 H 0.140 0.860 37 H 0.114 0.886 38 H 0.099 0.901 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 12.260 -20.095 4.310 23.931 hybrid contribution -0.063 0.817 0.557 0.990 sum 12.197 -19.279 4.867 23.326 Atomic orbital electron populations 1.70149 1.08324 1.28468 1.50173 1.26084 0.95764 1.03983 0.93939 0.85111 0.79182 0.77322 0.77596 1.17442 1.20667 1.20474 1.21667 0.94361 0.90557 1.52562 0.89660 1.18502 0.88753 0.84512 0.93888 1.46182 1.11144 1.05572 1.73112 1.21557 0.90056 0.85011 0.75654 1.90645 1.19530 1.85424 1.51961 1.21828 0.93927 0.86853 1.04896 1.60091 1.20027 1.00436 1.52169 1.21288 0.94632 0.89930 0.95939 0.90908 1.22004 0.99049 0.94919 1.02188 1.21971 1.00923 0.92813 0.85337 1.46046 1.55825 1.21510 1.13216 1.21114 0.77626 0.88997 0.82352 1.90730 1.62663 1.62678 1.33385 1.21946 0.98728 0.89710 1.06558 1.21190 0.96881 0.98669 0.97224 0.92304 0.99886 0.99514 0.75536 0.89040 0.86419 0.83098 0.92241 0.88780 0.88263 0.86284 0.76117 0.86021 0.88573 0.90075 0.93681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.14 13.29 21.45 0.28 -55.85 16 2 C 0.00 0.09 5.46 84.65 0.46 0.55 16 3 Si 0.98 41.80 29.54 68.60 2.03 43.83 16 4 H -0.25 -9.74 7.11 99.48 0.71 -9.04 16 5 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 6 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.55 -29.67 9.28 25.60 0.24 -29.43 16 8 H 0.09 4.09 7.60 -2.91 -0.02 4.07 16 9 C 0.27 14.47 5.43 85.63 0.46 14.93 16 10 N -0.71 -28.65 5.55 -466.78 -2.59 -31.24 16 11 C 0.49 18.49 7.87 87.66 0.69 19.18 16 12 O -0.59 -28.80 16.20 -3.03 -0.05 -28.85 16 13 C 0.06 1.30 5.93 85.56 0.51 1.80 16 14 N -0.69 -15.47 5.89 -499.89 -2.95 -18.41 16 15 C 0.09 1.25 2.04 44.09 0.09 1.34 16 16 H 0.07 0.63 7.51 -2.39 -0.02 0.62 16 17 C -0.14 -1.52 5.06 30.19 0.15 -1.36 16 18 C 0.11 0.63 6.47 86.24 0.56 1.19 16 19 N -0.72 -8.80 5.27 -462.59 -2.44 -11.24 16 20 C 0.51 9.94 7.06 88.11 0.62 10.56 16 21 O -0.61 -18.44 17.92 -3.05 -0.05 -18.49 16 22 C -0.13 -1.75 5.57 30.10 0.17 -1.58 16 23 C -0.10 -1.65 5.14 30.19 0.16 -1.49 16 24 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 25 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 26 H -0.01 -0.80 8.14 -2.38 -0.02 -0.82 16 27 H 0.41 13.22 8.32 -92.71 -0.77 12.45 16 28 H 0.09 1.49 8.03 -2.39 -0.02 1.47 16 29 H 0.12 2.25 6.95 -2.39 -0.02 2.23 16 30 H 0.35 8.24 7.84 -89.69 -0.70 7.54 16 31 H 0.06 0.94 8.05 -2.39 -0.02 0.92 16 32 H 0.09 0.78 7.87 -2.39 -0.02 0.77 16 33 H 0.10 0.22 6.71 -2.39 -0.02 0.21 16 34 H 0.12 0.09 8.14 -2.39 -0.02 0.07 16 35 H 0.40 4.52 8.91 -92.71 -0.83 3.69 16 36 H 0.12 0.83 6.77 -2.39 -0.02 0.81 16 37 H 0.10 1.40 8.13 -2.39 -0.02 1.38 16 38 H 0.08 1.31 6.88 -2.39 -0.02 1.29 16 39 H 0.04 1.01 7.86 -2.39 -0.02 0.99 16 Total: -1.00 -81.89 320.45 -2.87 -84.76 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: -1.21 Total: 19.80 kcal Atomic # 6 Polarization: 11.59 SS G_CDS: 4.11 Total: 15.70 kcal Atomic # 7 Polarization: -109.05 SS G_CDS: -7.69 Total: -116.74 kcal Atomic # 8 Polarization: -47.24 SS G_CDS: -0.10 Total: -47.34 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -81.89 -2.87 -84.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396745536.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.742 kcal (2) G-P(sol) polarization free energy of solvation -81.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds