Wall clock time and date at job start Mon Mar 30 2020 05:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 114.00110 * 2 1 4 4 C 1.50701 * 110.45856 * 305.07035 * 3 2 1 5 5 O 1.21278 * 120.00013 * 128.53861 * 4 3 2 6 6 N 1.34781 * 119.99476 * 308.53729 * 4 3 2 7 7 C 1.46507 * 119.99578 * 183.77616 * 6 4 3 8 8 C 1.50702 * 109.46822 * 270.00016 * 7 6 4 9 9 H 1.07996 * 120.00180 * 359.97438 * 8 7 6 10 10 C 1.37870 * 119.99642 * 180.02562 * 8 7 6 11 11 N 1.31516 * 120.00338 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99967 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47024 * 89.99845 * 12 10 8 14 14 H 1.48493 * 109.47300 * 209.99990 * 12 10 8 15 15 H 1.48497 * 109.47189 * 330.00071 * 12 10 8 16 16 C 1.46494 * 120.00308 * 3.77188 * 6 4 3 17 17 C 1.52998 * 117.50092 * 235.69470 * 16 6 4 18 18 C 1.53001 * 60.03288 * 252.49908 * 17 16 6 19 19 C 1.54509 * 110.51080 * 182.46115 * 3 2 1 20 20 C 1.54487 * 104.06156 * 241.21920 * 19 3 2 21 21 O 1.44424 * 104.79975 * 23.98206 * 20 19 3 22 22 C 1.44416 * 105.27838 * 319.48425 * 21 20 19 23 23 H 1.08992 * 109.47524 * 62.37635 * 1 2 3 24 24 H 1.09002 * 109.46991 * 182.38091 * 1 2 3 25 25 H 1.09005 * 109.46769 * 302.37854 * 1 2 3 26 26 H 1.08995 * 109.46788 * 29.99893 * 7 6 4 27 27 H 1.08995 * 109.46887 * 150.00124 * 7 6 4 28 28 H 0.97005 * 120.00291 * 180.02562 * 11 10 8 29 29 H 1.09000 * 115.56016 * 21.38449 * 16 6 4 30 30 H 1.09002 * 117.49779 * 359.97438 * 17 16 6 31 31 H 1.09002 * 117.50166 * 145.00180 * 17 16 6 32 32 H 1.09003 * 117.50219 * 107.49353 * 18 17 16 33 33 H 1.08996 * 117.50050 * 252.52506 * 18 17 16 34 34 H 1.08999 * 110.51454 * 359.86160 * 19 3 2 35 35 H 1.09001 * 110.51206 * 122.43947 * 19 3 2 36 36 H 1.08997 * 110.36787 * 142.81342 * 20 19 3 37 37 H 1.09000 * 110.36971 * 265.14940 * 20 19 3 38 38 H 1.09002 * 110.37863 * 281.68581 * 22 21 20 39 39 H 1.09002 * 110.37578 * 159.34366 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4834 2.1167 -1.1556 5 8 1.0265 3.2232 -0.9614 6 7 1.5199 1.6123 -2.4050 7 6 1.0846 2.4319 -3.5387 8 6 -0.3903 2.2267 -3.7699 9 1 -0.9477 1.5529 -3.1360 10 6 -1.0280 2.8984 -4.7912 11 7 -0.3490 3.7177 -5.5640 12 14 -2.8561 2.6435 -5.0783 13 1 -3.6249 3.6332 -4.2815 14 1 -3.1608 2.8250 -6.5202 15 1 -3.2359 1.2699 -4.6611 16 6 1.9948 0.2448 -2.6293 17 6 3.1506 0.0507 -3.6129 18 6 1.7346 -0.3777 -4.0034 19 6 3.5512 1.2120 -0.0621 20 6 4.0213 1.8864 1.2459 21 8 2.8993 1.7653 2.1472 22 6 1.7315 2.0252 1.3382 23 1 -0.3634 0.4764 -0.9104 24 1 -0.3633 -1.0268 0.0427 25 1 -0.3633 0.5504 0.8679 26 1 1.2757 3.4828 -3.3217 27 1 1.6366 2.1390 -4.4318 28 1 -0.7977 4.1906 -6.2824 29 1 1.9555 -0.4148 -1.7625 30 1 3.5573 0.9406 -4.0934 31 1 3.8719 -0.7364 -3.3930 32 1 1.2100 0.2304 -4.7404 33 1 1.5243 -1.4465 -4.0399 34 1 3.8699 0.1700 -0.0904 35 1 3.9319 1.7504 -0.9301 36 1 4.8902 1.3667 1.6496 37 1 4.2543 2.9363 1.0689 38 1 1.6134 3.0965 1.1754 39 1 0.8414 1.6123 1.8129 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401631494.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:10 Heat of formation + Delta-G solvation = -81.520037 kcal Electronic energy + Delta-G solvation = -22459.845505 eV Core-core repulsion = 19176.462279 eV Total energy + Delta-G solvation = -3283.383227 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.71425 -38.35713 -36.85943 -36.72755 -33.28681 -32.13070 -31.48243 -28.84177 -27.51587 -26.61849 -23.85257 -22.51544 -22.44973 -21.86834 -20.85548 -18.74530 -17.54391 -16.74006 -16.44686 -16.17951 -15.30470 -15.15167 -14.95317 -14.78664 -14.41376 -14.06307 -13.79839 -13.30846 -12.94817 -12.53187 -12.29785 -11.94373 -11.75338 -11.64502 -11.39892 -11.32265 -11.04799 -11.00586 -10.91733 -10.61117 -10.57215 -10.28305 -10.08101 -9.84003 -9.75609 -9.54107 -8.68753 -8.49447 -7.60031 -6.10323 -4.15093 2.99229 3.26927 3.33298 3.34855 3.55073 3.72337 3.97139 4.36521 4.42897 4.62195 4.77852 4.80430 5.07300 5.23307 5.24978 5.37909 5.38787 5.46972 5.55280 5.60347 5.63624 5.66062 5.77584 5.89480 5.94532 5.97723 6.03300 6.25460 6.49382 6.65937 6.78373 6.90070 7.12348 7.32970 7.44064 7.85000 8.15189 8.28668 8.75983 8.92868 9.49744 10.97623 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022653 B = 0.006655 C = 0.006180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.717184 B = 4206.465684 C = 4529.779154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.359 6.359 3 C 0.069 3.931 4 C 0.495 3.505 5 O -0.530 6.530 6 N -0.556 5.556 7 C 0.242 3.758 8 C -0.521 4.521 9 H 0.057 0.943 10 C 0.062 3.938 11 N -0.894 5.894 12 Si 0.897 3.103 13 H -0.280 1.280 14 H -0.285 1.285 15 H -0.274 1.274 16 C 0.061 3.939 17 C -0.205 4.205 18 C -0.178 4.178 19 C -0.136 4.136 20 C 0.046 3.954 21 O -0.370 6.370 22 C 0.033 3.967 23 H 0.060 0.940 24 H 0.091 0.909 25 H 0.045 0.955 26 H 0.042 0.958 27 H 0.036 0.964 28 H 0.264 0.736 29 H 0.146 0.854 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.117 0.883 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.063 0.937 38 H 0.091 0.909 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.341 -8.381 9.023 14.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.278 6.278 3 C 0.026 3.974 4 C 0.279 3.721 5 O -0.408 6.408 6 N -0.285 5.285 7 C 0.123 3.877 8 C -0.560 4.560 9 H 0.075 0.925 10 C -0.140 4.140 11 N -0.533 5.533 12 Si 0.724 3.276 13 H -0.206 1.206 14 H -0.211 1.211 15 H -0.199 1.199 16 C -0.044 4.044 17 C -0.243 4.243 18 C -0.215 4.215 19 C -0.174 4.174 20 C -0.030 4.030 21 O -0.288 6.288 22 C -0.044 4.044 23 H 0.078 0.922 24 H 0.110 0.890 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.163 0.837 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.135 0.865 33 H 0.109 0.891 34 H 0.115 0.885 35 H 0.110 0.890 36 H 0.114 0.886 37 H 0.082 0.918 38 H 0.109 0.891 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.178 -7.864 9.167 14.050 hybrid contribution -1.280 0.099 -0.701 1.462 sum 5.898 -7.765 8.466 12.913 Atomic orbital electron populations 1.22969 0.80255 1.03125 1.01663 1.87871 1.20618 1.25144 1.94194 1.23127 0.95257 0.84342 0.94665 1.20436 0.80127 0.87214 0.84291 1.90693 1.45567 1.20804 1.83736 1.47770 1.60427 1.12801 1.07493 1.19353 0.95098 0.90857 0.82372 1.21336 0.93701 1.26167 1.14783 0.92468 1.24920 0.98418 0.94905 0.95782 1.69927 1.36167 1.28055 1.19176 0.86517 0.85163 0.78591 0.77295 1.20566 1.21115 1.19872 1.22275 1.00514 0.86015 0.95639 1.23353 0.92124 1.03265 1.05592 1.23338 0.98234 1.00784 0.99180 1.22968 0.91080 1.03821 0.99536 1.23441 0.90615 1.00243 0.88746 1.89104 1.15213 1.92102 1.32425 1.23899 0.89763 1.01511 0.89234 0.92172 0.89028 0.93599 0.94037 0.94583 0.92668 0.83682 0.88950 0.89035 0.86473 0.89091 0.88521 0.89030 0.88585 0.91846 0.89119 0.88370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 10.20 101.05 1.03 1.26 16 2 O -0.36 -5.50 7.48 -35.23 -0.26 -5.76 16 3 C 0.07 1.12 0.58 -90.20 -0.05 1.07 16 4 C 0.49 10.14 5.00 -10.98 -0.05 10.09 16 5 O -0.53 -12.92 15.05 5.56 0.08 -12.83 16 6 N -0.56 -11.60 2.68 -167.43 -0.45 -12.05 16 7 C 0.24 6.14 4.40 -5.19 -0.02 6.12 16 8 C -0.52 -14.30 8.96 -34.44 -0.31 -14.61 16 9 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 10 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 11 N -0.89 -26.03 13.29 55.43 0.74 -25.29 16 12 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 15 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 16 C 0.06 1.04 5.26 -67.90 -0.36 0.68 16 17 C -0.20 -3.08 10.03 -26.73 -0.27 -3.34 16 18 C -0.18 -2.97 9.73 -26.69 -0.26 -3.23 16 19 C -0.14 -1.81 5.82 -25.16 -0.15 -1.96 16 20 C 0.05 0.57 7.63 37.94 0.29 0.86 16 21 O -0.37 -5.53 11.65 -35.23 -0.41 -5.94 16 22 C 0.03 0.52 6.59 37.94 0.25 0.77 16 23 H 0.06 1.06 7.07 -51.93 -0.37 0.69 16 24 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.05 0.62 6.44 -51.93 -0.33 0.28 16 26 H 0.04 1.20 7.48 -51.93 -0.39 0.81 16 27 H 0.04 0.93 6.25 -51.93 -0.32 0.60 16 28 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 29 H 0.15 2.29 4.93 -51.93 -0.26 2.04 16 30 H 0.09 1.50 7.87 -51.93 -0.41 1.09 16 31 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.12 2.36 6.30 -51.93 -0.33 2.04 16 33 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.10 1.14 8.00 -51.93 -0.42 0.72 16 35 H 0.09 1.24 7.73 -51.93 -0.40 0.84 16 36 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.09 1.54 6.84 -51.93 -0.35 1.19 16 39 H 0.10 1.43 6.33 -51.93 -0.33 1.10 16 LS Contribution 312.70 15.07 4.71 4.71 Total: -1.00 -31.33 312.70 -6.17 -37.50 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -5.56 Total: 3.86 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: 0.00 Total: -0.67 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: 0.29 Total: -37.34 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -0.59 Total: -24.54 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.33 -6.17 -37.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401631494.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.021 kcal (2) G-P(sol) polarization free energy of solvation -31.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds