Wall clock time and date at job start Mon Mar 30 2020 05:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 114.00110 * 2 1 4 4 C 1.50701 * 110.45856 * 305.07035 * 3 2 1 5 5 O 1.21278 * 120.00013 * 128.53861 * 4 3 2 6 6 N 1.34781 * 119.99476 * 308.53729 * 4 3 2 7 7 C 1.46507 * 119.99578 * 183.77616 * 6 4 3 8 8 C 1.50702 * 109.46822 * 270.00016 * 7 6 4 9 9 H 1.07996 * 120.00180 * 359.97438 * 8 7 6 10 10 C 1.37870 * 119.99642 * 180.02562 * 8 7 6 11 11 N 1.31516 * 120.00338 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99967 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47024 * 89.99845 * 12 10 8 14 14 H 1.48493 * 109.47300 * 209.99990 * 12 10 8 15 15 H 1.48497 * 109.47189 * 330.00071 * 12 10 8 16 16 C 1.46494 * 120.00308 * 3.77188 * 6 4 3 17 17 C 1.52998 * 117.50092 * 235.69470 * 16 6 4 18 18 C 1.53001 * 60.03288 * 252.49908 * 17 16 6 19 19 C 1.54509 * 110.51080 * 182.46115 * 3 2 1 20 20 C 1.54487 * 104.06156 * 241.21920 * 19 3 2 21 21 O 1.44424 * 104.79975 * 23.98206 * 20 19 3 22 22 C 1.44416 * 105.27838 * 319.48425 * 21 20 19 23 23 H 1.08992 * 109.47524 * 62.37635 * 1 2 3 24 24 H 1.09002 * 109.46991 * 182.38091 * 1 2 3 25 25 H 1.09005 * 109.46769 * 302.37854 * 1 2 3 26 26 H 1.08995 * 109.46788 * 29.99893 * 7 6 4 27 27 H 1.08995 * 109.46887 * 150.00124 * 7 6 4 28 28 H 0.97005 * 120.00291 * 180.02562 * 11 10 8 29 29 H 1.09000 * 115.56016 * 21.38449 * 16 6 4 30 30 H 1.09002 * 117.49779 * 359.97438 * 17 16 6 31 31 H 1.09002 * 117.50166 * 145.00180 * 17 16 6 32 32 H 1.09003 * 117.50219 * 107.49353 * 18 17 16 33 33 H 1.08996 * 117.50050 * 252.52506 * 18 17 16 34 34 H 1.08999 * 110.51454 * 359.86160 * 19 3 2 35 35 H 1.09001 * 110.51206 * 122.43947 * 19 3 2 36 36 H 1.08997 * 110.36787 * 142.81342 * 20 19 3 37 37 H 1.09000 * 110.36971 * 265.14940 * 20 19 3 38 38 H 1.09002 * 110.37863 * 281.68581 * 22 21 20 39 39 H 1.09002 * 110.37578 * 159.34366 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4834 2.1167 -1.1556 5 8 1.0265 3.2232 -0.9614 6 7 1.5199 1.6123 -2.4050 7 6 1.0846 2.4319 -3.5387 8 6 -0.3903 2.2267 -3.7699 9 1 -0.9477 1.5529 -3.1360 10 6 -1.0280 2.8984 -4.7912 11 7 -0.3490 3.7177 -5.5640 12 14 -2.8561 2.6435 -5.0783 13 1 -3.6249 3.6332 -4.2815 14 1 -3.1608 2.8250 -6.5202 15 1 -3.2359 1.2699 -4.6611 16 6 1.9948 0.2448 -2.6293 17 6 3.1506 0.0507 -3.6129 18 6 1.7346 -0.3777 -4.0034 19 6 3.5512 1.2120 -0.0621 20 6 4.0213 1.8864 1.2459 21 8 2.8993 1.7653 2.1472 22 6 1.7315 2.0252 1.3382 23 1 -0.3634 0.4764 -0.9104 24 1 -0.3633 -1.0268 0.0427 25 1 -0.3633 0.5504 0.8679 26 1 1.2757 3.4828 -3.3217 27 1 1.6366 2.1390 -4.4318 28 1 -0.7977 4.1906 -6.2824 29 1 1.9555 -0.4148 -1.7625 30 1 3.5573 0.9406 -4.0934 31 1 3.8719 -0.7364 -3.3930 32 1 1.2100 0.2304 -4.7404 33 1 1.5243 -1.4465 -4.0399 34 1 3.8699 0.1700 -0.0904 35 1 3.9319 1.7504 -0.9301 36 1 4.8902 1.3667 1.6496 37 1 4.2543 2.9363 1.0689 38 1 1.6134 3.0965 1.1754 39 1 0.8414 1.6123 1.8129 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401631494.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:09 Heat of formation + Delta-G solvation = -103.434971 kcal Electronic energy + Delta-G solvation = -22460.795808 eV Core-core repulsion = 19176.462279 eV Total energy + Delta-G solvation = -3284.333530 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.09893 -39.75360 -38.33780 -38.03645 -35.26308 -33.85380 -32.75781 -30.08828 -29.42238 -27.79946 -25.71185 -24.04310 -23.58924 -23.16417 -22.30594 -20.21128 -19.05838 -18.52187 -17.95682 -17.55219 -16.88482 -16.53428 -16.33196 -16.18325 -15.95202 -15.45391 -15.20460 -14.83866 -14.27554 -14.21776 -13.68363 -13.49987 -13.37657 -12.90888 -12.89498 -12.83007 -12.65764 -12.43304 -12.26782 -12.23823 -12.18619 -12.14954 -11.49292 -11.43480 -11.21522 -10.91214 -10.67914 -10.18996 -9.30324 -8.25107 -6.39105 1.33497 1.35894 1.41952 1.46750 2.01942 2.36051 2.46895 2.78997 3.04453 3.10364 3.34733 3.49512 3.59346 3.95298 4.06720 4.16562 4.18841 4.24789 4.29251 4.40766 4.44980 4.58972 4.75023 4.78126 4.80964 4.84035 4.86093 4.94824 5.06625 5.07301 5.25308 5.40614 5.50391 5.53732 5.73380 5.88174 6.01366 6.60812 6.70313 7.15333 7.33339 8.81815 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022653 B = 0.006655 C = 0.006180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.717184 B = 4206.465684 C = 4529.779154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.350 6.350 3 C 0.077 3.923 4 C 0.489 3.511 5 O -0.581 6.581 6 N -0.560 5.560 7 C 0.261 3.739 8 C -0.531 4.531 9 H 0.051 0.949 10 C 0.010 3.990 11 N -0.928 5.928 12 Si 0.963 3.037 13 H -0.281 1.281 14 H -0.275 1.275 15 H -0.261 1.261 16 C 0.047 3.953 17 C -0.179 4.179 18 C -0.185 4.185 19 C -0.132 4.132 20 C 0.043 3.957 21 O -0.376 6.376 22 C 0.036 3.964 23 H 0.023 0.977 24 H 0.125 0.875 25 H 0.054 0.946 26 H -0.005 1.005 27 H 0.027 0.973 28 H 0.267 0.733 29 H 0.167 0.833 30 H 0.074 0.926 31 H 0.135 0.865 32 H 0.075 0.925 33 H 0.123 0.877 34 H 0.122 0.878 35 H 0.085 0.915 36 H 0.133 0.867 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.975 -11.072 10.098 16.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.269 6.269 3 C 0.034 3.966 4 C 0.276 3.724 5 O -0.462 6.462 6 N -0.288 5.288 7 C 0.141 3.859 8 C -0.569 4.569 9 H 0.070 0.930 10 C -0.189 4.189 11 N -0.568 5.568 12 Si 0.787 3.213 13 H -0.207 1.207 14 H -0.200 1.200 15 H -0.185 1.185 16 C -0.056 4.056 17 C -0.217 4.217 18 C -0.223 4.223 19 C -0.170 4.170 20 C -0.033 4.033 21 O -0.294 6.294 22 C -0.041 4.041 23 H 0.042 0.958 24 H 0.144 0.856 25 H 0.073 0.927 26 H 0.013 0.987 27 H 0.045 0.955 28 H 0.076 0.924 29 H 0.184 0.816 30 H 0.093 0.907 31 H 0.153 0.847 32 H 0.094 0.906 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.104 0.896 36 H 0.151 0.849 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 7.839 -10.599 10.247 16.697 hybrid contribution -1.438 0.949 -1.044 2.015 sum 6.401 -9.650 9.203 14.792 Atomic orbital electron populations 1.23072 0.79855 1.05023 1.00190 1.87872 1.20979 1.24153 1.93894 1.23033 0.97070 0.84073 0.92415 1.21302 0.79025 0.87009 0.85085 1.90658 1.47717 1.23265 1.84595 1.47721 1.60392 1.14047 1.06610 1.18763 0.94407 0.89126 0.83638 1.21547 0.94699 1.26004 1.14678 0.93033 1.25793 1.03100 0.94513 0.95495 1.70043 1.38092 1.28907 1.19744 0.85486 0.79381 0.78898 0.77529 1.20703 1.20041 1.18550 1.22601 1.02243 0.84053 0.96741 1.23418 0.91847 1.03496 1.02965 1.23304 0.99447 1.01857 0.97665 1.23047 0.88466 1.05502 0.99990 1.23685 0.90784 1.00858 0.87939 1.89103 1.15495 1.91992 1.32839 1.23774 0.90817 1.00287 0.89245 0.95783 0.85639 0.92746 0.98732 0.95512 0.92431 0.81590 0.90717 0.84667 0.90621 0.85882 0.85931 0.89615 0.84944 0.91857 0.91246 0.87405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.39 10.20 113.37 1.16 1.55 16 2 O -0.35 -9.84 7.48 -148.98 -1.11 -10.96 16 3 C 0.08 2.41 0.58 -10.52 -0.01 2.41 16 4 C 0.49 20.56 5.00 87.66 0.44 21.00 16 5 O -0.58 -29.89 15.05 -3.02 -0.05 -29.94 16 6 N -0.56 -23.96 2.68 -802.01 -2.15 -26.10 16 7 C 0.26 14.02 4.40 85.63 0.38 14.40 16 8 C -0.53 -30.24 8.96 25.60 0.23 -30.01 16 9 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 10 C 0.01 0.57 5.46 84.65 0.46 1.03 16 11 N -0.93 -55.83 13.29 21.44 0.28 -55.54 16 12 Si 0.96 44.72 29.54 68.60 2.03 46.75 16 13 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 14 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 15 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 16 C 0.05 1.55 5.26 45.02 0.24 1.78 16 17 C -0.18 -4.99 10.03 30.59 0.31 -4.68 16 18 C -0.19 -5.98 9.73 30.62 0.30 -5.68 16 19 C -0.13 -3.18 5.82 31.61 0.18 -3.00 16 20 C 0.04 0.94 7.63 72.49 0.55 1.50 16 21 O -0.38 -10.42 11.65 -148.98 -1.74 -12.16 16 22 C 0.04 1.11 6.59 72.49 0.48 1.59 16 23 H 0.02 0.83 7.07 -2.39 -0.02 0.82 16 24 H 0.13 2.56 8.14 -2.39 -0.02 2.54 16 25 H 0.05 1.39 6.44 -2.38 -0.02 1.38 16 26 H -0.01 -0.34 7.48 -2.39 -0.02 -0.35 16 27 H 0.03 1.47 6.25 -2.39 -0.01 1.45 16 28 H 0.27 15.08 8.31 -92.70 -0.77 14.31 16 29 H 0.17 4.76 4.93 -2.39 -0.01 4.75 16 30 H 0.07 2.38 7.87 -2.39 -0.02 2.36 16 31 H 0.14 2.65 8.14 -2.39 -0.02 2.63 16 32 H 0.08 3.13 6.30 -2.39 -0.02 3.11 16 33 H 0.12 3.14 8.14 -2.39 -0.02 3.12 16 34 H 0.12 2.34 8.00 -2.39 -0.02 2.32 16 35 H 0.09 2.18 7.73 -2.39 -0.02 2.17 16 36 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.07 2.43 6.84 -2.39 -0.02 2.42 16 39 H 0.11 3.03 6.33 -2.39 -0.02 3.01 16 Total: -1.00 -71.63 312.70 3.03 -68.60 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: 1.05 Total: 17.47 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: 4.71 Total: 1.88 kcal Atomic # 7 Polarization: -79.78 SS G_CDS: -1.86 Total: -81.65 kcal Atomic # 8 Polarization: -50.15 SS G_CDS: -2.90 Total: -53.05 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -71.63 3.03 -68.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401631494.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.840 kcal (2) G-P(sol) polarization free energy of solvation -71.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds